Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 4.5e-172 607.8 305 100.0
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 5.3e-133 478.0 322 75.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 5.9e-132 474.6 320 78.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.8e-125 453.0 280 80.0
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 7.7e-124 447.6 294 77.2
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 1.0e-123 447.2 246 86.6
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.8e-123 445.3 259 84.2
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 5.0e-123 444.9 243 87.2
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 5.0e-123 444.9 298 76.2
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 8.5e-123 444.1 246 87.0
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 1.1e-122 443.7 337 71.2
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 3.2e-122 442.2 244 87.7
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 4.2e-122 441.8 253 84.6
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 4.2e-122 441.8 299 75.9
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 4.2e-122 441.8 244 86.5
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.2e-122 441.8 244 86.5
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 5.5e-122 441.4 285 78.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 9.5e-122 440.7 321 72.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.1e-121 439.5 242 88.0
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 2.7e-121 439.1 277 78.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 2.7e-121 439.1 298 75.8
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 3.6e-121 438.7 242 86.4
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.7e-121 438.3 301 74.8
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 8.0e-121 437.6 298 73.8
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.4e-120 436.8 242 86.0
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.4e-120 436.8 295 75.9
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.4e-120 436.8 311 72.7
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.8e-120 436.4 303 74.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-120 436.4 313 71.9
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 3.0e-120 435.6 241 85.9
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.5e-119 433.3 271 77.9
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 1.5e-119 433.3 271 77.9
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 1.5e-119 433.3 272 78.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 1.5e-119 433.3 246 84.1
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.5e-119 433.3 261 81.6
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 1.5e-119 433.3 276 77.9
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 3.4e-119 432.2 317 71.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 3.4e-119 432.2 271 77.5
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 3.4e-119 432.2 298 74.5
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 4.4e-119 431.8 253 81.4
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 5.7e-119 431.4 315 71.4
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 9.8e-119 430.6 243 84.0
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 1.3e-118 430.3 277 74.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.3e-118 430.3 290 73.1
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.3e-118 430.3 256 79.7
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 1.7e-118 429.9 299 74.9
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.7e-118 429.9 299 74.2
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.7e-118 428.7 245 82.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.9e-118 428.3 308 72.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-117 427.2 258 79.1
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.1e-117 425.6 245 81.6
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 3.1e-117 425.6 306 69.3
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 4.1e-117 425.2 280 72.9
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.4e-117 424.9 272 76.5
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 7.0e-117 424.5 271 76.0
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 1.6e-116 423.3 246 81.3
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 2.0e-116 422.9 308 71.4
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.7e-116 422.5 298 71.1
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 2.7e-116 422.5 291 73.2
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 4.5e-116 421.8 293 71.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.5e-116 421.8 243 83.1
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 5.9e-116 421.4 256 77.7
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.3e-115 419.5 261 78.9
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 2.9e-115 419.1 302 70.9
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 5.0e-115 418.3 297 71.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 6.6e-115 417.9 258 76.0
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 8.6e-115 417.5 295 69.5
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 8.6e-115 417.5 316 68.4
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 1.5e-114 416.8 303 68.3
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.3e-114 415.6 258 75.6
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 9.5e-114 414.1 306 70.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.6e-113 413.3 288 71.2
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 2.1e-113 412.9 257 77.4
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 6.1e-113 411.4 243 79.0
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 8.0e-113 411.0 257 77.0
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 1.4e-112 410.2 304 69.7
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 2.3e-112 409.5 245 77.1
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 3.0e-112 409.1 241 78.8
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 8.9e-112 407.5 323 66.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 8.9e-112 407.5 243 78.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 9.8e-111 404.1 294 70.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 9.8e-111 404.1 316 66.5
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 6.4e-110 401.4 323 65.6
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.4e-109 399.4 244 75.8
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 5.4e-109 398.3 271 71.6
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.2e-108 397.1 292 70.9
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.0e-108 396.4 252 75.0
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 5.9e-108 394.8 366 59.8
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 7.8e-108 394.4 284 71.5
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.0e-107 394.0 244 74.6
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 1.3e-107 393.7 334 62.9
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 7.3e-106 387.9 234 80.8
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.2e-105 387.1 291 65.6
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 2.6e-103 379.4 259 72.6
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 5.8e-103 378.3 212 84.4
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.3e-102 377.1 298 66.4
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 6.4e-102 374.8 377 56.5
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-101 374.0 258 71.3
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 4.1e-101 372.1 259 73.0
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 4.7e-97 358.6 245 75.1
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 1.4e-96 357.1 311 58.5
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.3e-96 356.3 212 75.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.1e-96 355.9 315 61.6
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 3.1e-96 355.9 249 71.9
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 7.1e-93 344.7 242 70.7
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 2.7e-92 342.8 215 78.1
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 1.3e-91 340.5 278 61.2
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.6e-89 333.6 263 60.8
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.8e-89 332.8 241 69.7
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 1.9e-82 310.1 215 71.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 9.6e-82 307.8 167 89.8
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 6.2e-81 305.1 231 65.8
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 1.1e-74 284.3 212 62.3
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 2.6e-71 273.1 242 54.1
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 4.9e-70 268.9 224 62.5
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 6.4e-70 268.5 176 74.4
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 7.1e-69 265.0 159 81.1
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 9.3e-69 264.6 164 76.2
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 7.9e-68 261.5 192 72.4
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.8e-67 260.4 144 87.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 5.6e-66 255.4 237 51.5
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.1e-65 253.4 251 53.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 2.4e-61 240.0 206 64.1
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.7e-59 231.5 136 82.4
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 9.6e-58 228.0 238 43.7
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.7e-57 226.1 285 49.1
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.5e-55 220.7 136 76.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 4.2e-53 212.6 129 82.2
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.2e-52 211.1 130 76.2
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.0e-51 208.0 155 63.2
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 7.4e-50 201.8 110 90.0
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.7e-49 199.5 112 83.0
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 4.8e-49 199.1 311 37.9
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 6.9e-48 195.3 163 63.8
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 5.0e-46 189.1 153 67.3
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 1.1e-45 188.0 111 75.7
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.1e-45 188.0 136 68.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-45 188.0 136 68.4
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.6e-44 183.0 175 57.7
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.3e-42 176.0 232 39.7
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.7e-41 172.9 164 56.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 1.8e-40 170.6 92 85.9
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 3.2e-37 159.8 223 39.9
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 2.1e-36 157.1 166 54.8
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 7.9e-36 155.2 82 81.7
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 1.8e-35 154.1 77 93.5
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 3.9e-35 152.9 76 96.1
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 1.4e-32 144.4 111 64.9
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 2.4e-32 143.7 230 37.8
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 2.0e-31 140.6 75 82.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 4.7e-28 129.4 66 89.4
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 4.8e-25 119.4 243 33.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.8e-24 117.5 62 87.1
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 7.0e-24 115.5 56 91.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 9.1e-24 115.2 93 61.3
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.5e-21 107.1 57 82.5
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 8.0e-20 102.1 70 68.6
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 1.7e-17 94.4 82 62.2
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 2.4e-16 90.5 114 50.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 7.0e-16 89.0 98 48.0
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.3e-14 84.7 114 43.0
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 8.5e-14 82.0 59 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 8.3e-09 65.5 102 37.3
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 1.4e-08 64.7 45 64.4
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 2.4e-08 63.9 75 46.7


User provided reference genes

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