Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p013709 Quercus lobata HOM05D000278 ORTHO05D337751 2.5e-109 399.1 244 100.0
QL10p027147 Quercus lobata HOM05D000278 ORTHO05D005754 2.8e-15 86.7 52 86.5
Nitab4.5_0005692g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005754 4.7e-15 85.9 52 84.6
Cpa.g.sc999.3 Carica papaya HOM05D000278 ORTHO05D005754 6.2e-15 85.5 52 84.6
Potri.012G051300 Populus trichocarpa HOM05D000278 ORTHO05D005754 6.2e-15 85.5 52 84.6
Gohir.A11G006100 Gossypium hirsutum HOM05D000278 ORTHO05D005754 8.1e-15 85.1 52 84.6
Gohir.D11G005200 Gossypium hirsutum HOM05D000278 ORTHO05D005754 8.1e-15 85.1 52 84.6
Gorai.007G006400 Gossypium raimondii HOM05D000278 ORTHO05D005754 8.1e-15 85.1 52 84.6
Lsat_1_v5_gn_5_156500 Lactuca sativa HOM05D000278 ORTHO05D005754 8.1e-15 85.1 52 82.7
ClCG04G010810 Citrullus lanatus HOM05D000278 ORTHO05D005754 1.1e-14 84.7 51 86.3
Haze_18780 Corylus avellana HOM05D000278 ORTHO05D005754 1.1e-14 84.7 52 82.7
Peaxi162Scf00683g00032 Petunia axillaris HOM05D000278 ORTHO05D005754 1.1e-14 84.7 52 84.6
Ca_17227_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
Cc04_g06750 Coffea canephora HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
Gohir.A09G174700 Gossypium hirsutum HOM05D000278 ORTHO05D005754 1.4e-14 84.3 51 86.3
Gohir.D09G171700 Gossypium hirsutum HOM05D000278 ORTHO05D005754 1.4e-14 84.3 51 86.3
Gorai.006G193500 Gossypium raimondii HOM05D000278 ORTHO05D005754 1.4e-14 84.3 51 86.3
HanXRQChr13g0387831 Helianthus annuus HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
Nitab4.5_0001456g0010 Nicotiana tabacum HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
PGR044G2034 Punica granatum HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
THA.LOC104820373 Tarenaya hassleriana HOM05D000278 ORTHO05D005754 1.4e-14 84.3 52 82.7
Dinv10409 Davidia involucrata HOM05D000278 ORTHO05D005754 1.8e-14 84.0 52 80.8
Dinv13559 Davidia involucrata HOM05D000278 ORTHO05D005754 1.8e-14 84.0 52 80.8
HanXRQChr01g0008541 Helianthus annuus HOM05D000278 ORTHO05D005754 1.8e-14 84.0 52 80.8
Nn3g17995 Nelumbo nucifera HOM05D000278 ORTHO05D005754 1.8e-14 84.0 52 80.8
TAR622G1096 Trochodendron aralioides HOM05D000278 ORTHO05D005754 1.8e-14 84.0 52 80.8
EL10Ac5g11495 Beta vulgaris HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
COL.COLO4_04278 Corchorus olitorius HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
FvH4_7g06380 Fragaria vesca HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
FAN01G0075 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
FAN03G2674 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
FAN06G1697 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
FAN10G3787 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
Oeu024336.1 Olea europaea HOM05D000278 ORTHO05D005754 2.3e-14 83.6 103 50.5
RcHm_v2.0_Chr1g0334481 Rosa chinensis HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
Sabra15G0042700 Salix brachista HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
Thecc.03G045100 Theobroma cacao HOM05D000278 ORTHO05D005754 2.3e-14 83.6 52 82.7
Ca_15620_v3 Cicer arietinum L. HOM05D000278 ORTHO05D005754 3.1e-14 83.2 57 75.4
Ciclev10007963m.g Citrus clementina HOM05D000278 ORTHO05D005754 3.1e-14 83.2 52 80.8
COL.COLO4_23991 Corchorus olitorius HOM05D000278 ORTHO05D005754 3.1e-14 83.2 52 80.8
MELO3C002117.2 Cucumis melo HOM05D000278 ORTHO05D005754 3.1e-14 83.2 51 84.3
CsaV3_1G006990 Cucumis sativus L. HOM05D000278 ORTHO05D005754 3.1e-14 83.2 51 84.3
Manes.09G152200 Manihot esculenta HOM05D000278 ORTHO05D005754 3.1e-14 83.2 57 73.7
Sed0001845 Sechium edule HOM05D000278 ORTHO05D005754 3.1e-14 83.2 51 84.3
Atru.chr9.933 Acer truncatum HOM05D000278 ORTHO05D005754 4.0e-14 82.8 52 80.8
ATR0582G154 Amborella trichopoda HOM05D000278 ORTHO05D005754 4.0e-14 82.8 52 78.8
ECA236G0654 Erigeron canadensis HOM05D000278 ORTHO05D005754 4.0e-14 82.8 52 82.7
PGSC0003DMG400005665 Solanum tuberosum HOM05D000278 ORTHO05D005754 4.0e-14 82.8 52 82.7
Aqoxy3G00177 Aquilegia oxysepala HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 82.7
CSS0023726 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 78.8
Cfa019715 Carpinus fangiana HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
DCAR_023227 Daucus carota HOM05D000278 ORTHO05D005754 5.2e-14 82.4 101 49.5
Eucgr.K02244 Eucalyptus grandis HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
Thhalv10020479m.g Eutrema salsugineum HOM05D000278 ORTHO05D005754 5.2e-14 82.4 51 82.4
Manes.04G059400 Manihot esculenta HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
Potri.015G042600 Populus trichocarpa HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
Rhsim12G0140600 Rhododendron simsii HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
TWI15G0649 Tripterygium wilfordii HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
TWI60G1222 Tripterygium wilfordii HOM05D000278 ORTHO05D005754 5.2e-14 82.4 52 80.8
CSS0031079 Camellia sinensis var. sinensis HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 78.8
Carub.0003s1794 Capsella rubella HOM05D000278 ORTHO05D005754 6.8e-14 82.0 51 82.4
Lj1A152G45 Lonicera japonica HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 78.8
Lj9A423T66 Lonicera japonica HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 78.8
Medtr3g109925 Medicago truncatula HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 76.9
Nn4g24016 Nelumbo nucifera HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 78.8
Prupe.5G227000 Prunus persica HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 78.8
Sabra15G0044000 Salix brachista HOM05D000278 ORTHO05D005754 6.8e-14 82.0 52 80.8
MD14G1231500 Malus domestica HOM05D000278 ORTHO05D005754 8.9e-14 81.6 52 78.8
Solyc03g118910.1 Solanum lycopersicum HOM05D000278 ORTHO05D005754 8.9e-14 81.6 52 80.8
Sopen03g037850 Solanum pennellii HOM05D000278 ORTHO05D005754 8.9e-14 81.6 52 80.8
FAN02G0492 Fragaria x ananassa HOM05D000278 ORTHO05D005754 1.2e-13 81.3 52 80.8
MD06G1222400 Malus domestica HOM05D000278 ORTHO05D005754 1.2e-13 81.3 52 76.9
BcaC05g28655 Brassica carinata HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
BcaC09g48776 Brassica carinata HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
A01p36150 Brassica napus HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
A05p31540 Brassica napus HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
C01p45950 Brassica napus HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
C05p47840 Brassica napus HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
BolC1t04565H Brassica oleracea HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
BolC5t33498H Brassica oleracea HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
BraA01t03693Z Brassica rapa HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
BraA05t21989Z Brassica rapa HOM05D000278 ORTHO05D005754 1.5e-13 80.9 57 73.7
CDE07G1658 Ceratophyllum demersum HOM05D000278 ORTHO05D005754 1.5e-13 80.9 51 78.4
SMO358G0276 Selaginella moellendorffii HOM05D000278 ORTHO05D005754 1.5e-13 80.9 52 76.9
vmacro16429 Vaccinium macrocarpon HOM05D000278 ORTHO05D005754 1.5e-13 80.9 52 78.8
Aa31LG8G5030 Aethionema arabicum HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
AL3G31380 Arabidopsis lyrata HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
AT3G18190 Arabidopsis thaliana HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
BcaB04g20787 Brassica carinata HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
CARHR093520 Cardamine hirsuta HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
CiPaw.16G089700 Carya illinoinensis HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 80.8
AUR62029935 Chenopodium quinoa HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 80.8
AUR62033769 Chenopodium quinoa HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 80.8
FvH4_6g48350 Fragaria vesca HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 80.8
Glyma.05G242700 Glycine max HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 78.8
Hma1.2p1_1257F.1_g270720 Hydrangea macrophylla HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 76.9
Hma1.2p1_1612F.1_g293560 Hydrangea macrophylla HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 76.9
Sp3g16300 Schrenkiella parvula HOM05D000278 ORTHO05D005754 2.0e-13 80.5 51 80.4
VMungo0251G3005 Vigna mungo HOM05D000278 ORTHO05D005754 2.0e-13 80.5 52 78.8
Aqoxy3G00176 Aquilegia oxysepala HOM05D000278 ORTHO05D005754 2.6e-13 80.1 52 80.8
Duzib068G1026 Durio zibethinus HOM05D000278 ORTHO05D005754 2.6e-13 80.1 52 78.8
PSO541G5062 Papaver somniferum HOM05D000278 ORTHO05D005754 2.6e-13 80.1 52 76.9
PSO675G0205 Papaver somniferum HOM05D000278 ORTHO05D005754 2.6e-13 80.1 52 76.9
Phvul.002G326300 Phaseolus vulgaris HOM05D000278 ORTHO05D005754 2.6e-13 80.1 52 78.8
Sed0025276 Sechium edule HOM05D000278 ORTHO05D005754 2.6e-13 80.1 51 82.4
Duzib205G1185 Durio zibethinus HOM05D000278 ORTHO05D005754 3.4e-13 79.7 52 78.8
TPR.G12811 Trifolium pratense HOM05D000278 ORTHO05D005754 3.4e-13 79.7 52 78.8
TAR374G0990 Trochodendron aralioides HOM05D000278 ORTHO05D005754 3.4e-13 79.7 52 76.9
CANSAT80G0850 Cannabis sativa HOM05D000278 ORTHO05D005754 4.4e-13 79.3 52 76.9
CAN.G1129.42 Capsicum annuum HOM05D000278 ORTHO05D005754 4.4e-13 79.3 52 76.9
Lj4g0001788 Lotus japonicus HOM05D000278 ORTHO05D005754 5.8e-13 79.0 52 73.1
Lj4g0009644 Lotus japonicus HOM05D000278 ORTHO05D005754 5.8e-13 79.0 52 73.1
Sc12g0007460 Simmondsia chinensis HOM05D000278 ORTHO05D005754 5.8e-13 79.0 52 76.9
COL.COLO4_05359 Corchorus olitorius HOM05D000278 ORTHO05D005754 7.5e-13 78.6 56 71.4
Glyma.07G149200 Glycine max HOM05D000278 ORTHO05D005754 7.5e-13 78.6 52 76.9
Glyma.08G050100 Glycine max HOM05D000278 ORTHO05D005754 7.5e-13 78.6 52 76.9
Os02g0332200 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005754 7.5e-13 78.6 52 75.0
Psat0s2458g0160 Pisum sativum HOM05D000278 ORTHO05D005754 7.5e-13 78.6 115 44.3
SHI19047 Sapria himalayana HOM05D000278 ORTHO05D005754 9.9e-13 78.2 52 76.9
SGA_v2.0_scaffold168G38485 Striga asiatica HOM05D000278 ORTHO05D005754 9.9e-13 78.2 100 48.0
SGA_v2.0_scaffold612G53190 Striga asiatica HOM05D000278 ORTHO05D005754 9.9e-13 78.2 52 73.1
Psat7g005560 Pisum sativum HOM05D000278 ORTHO05D005754 1.3e-12 77.8 52 76.9
Zm00001eb001240 Zea mays HOM05D000278 ORTHO05D005754 1.3e-12 77.8 52 75.0
DCAR_013755 Daucus carota HOM05D000278 ORTHO05D005754 1.7e-12 77.4 101 47.5
Mapoly0047s0069 Marchantia polymorpha HOM05D000278 ORTHO05D005754 1.7e-12 77.4 52 71.2
Zm00001eb189870 Zea mays HOM05D000278 ORTHO05D005754 1.7e-12 77.4 52 73.1
MBI06_g36483_MAGBIO Magnolia biondii HOM05D000278 ORTHO05D005754 2.9e-12 76.6 52 73.1
Lalb_Chr14g0370831 Lupinus albus HOM05D000278 ORTHO05D005754 3.7e-12 76.3 51 78.4
Lalb_Chr24g0397981 Lupinus albus HOM05D000278 ORTHO05D005754 4.9e-12 75.9 52 75.0
Oeu033474.1 Olea europaea HOM05D000278 ORTHO05D005754 1.4e-11 74.3 103 46.6
CBR_g49606 Chara braunii HOM05D000278 ORTHO05D005754 2.4e-11 73.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3125 Anthoceros agrestis HOM05D000278 ORTHO05D005754 5.4e-11 72.4 52 65.4
Os10g0514600 Oryza sativa ssp. japonica HOM05D000278 ORTHO05D005754 7.1e-11 72.0 52 69.2
PRCOL_00000987 Prasinoderma coloniale HOM05D000278 ORTHO05D005754 1.6e-10 70.9 52 67.3
Cre05.g234639 Chlamydomonas reinhardtii HOM05D000278 ORTHO05D005754 2.7e-10 70.1 52 61.5
FAN05G5287 Fragaria x ananassa HOM05D000278 ORTHO05D005754 2.7e-10 70.1 52 69.2
Pp3c22_2530 Physcomitrium patens HOM05D000278 ORTHO05D005754 2.7e-10 70.1 52 69.2
Pp3c19_7680 Physcomitrium patens HOM05D000278 ORTHO05D005754 7.8e-10 68.6 52 67.3
Ah.13g074580 Amaranthus hybridus HOM05D000278 ORTHO05D005754 1.0e-09 68.2 52 73.1
MD13G1132500 Malus domestica HOM05D000278 ORTHO05D246380 3.0e-09 66.6 52 63.5
MCO07G137 Micromonas commoda HOM05D000278 ORTHO05D005754 1.5e-08 64.3 52 55.8
Migut.D01595 Erythranthe guttata HOM05D000278 ORTHO05D005754 1.9e-08 63.9 57 63.2
unitig_0.g804 Utricularia gibba HOM05D000278 ORTHO05D005754 7.3e-08 62.0 115 38.3
SalBow1G4025 Salvia bowleyana HOM05D000278 ORTHO05D005754 1.2e-07 61.2 103 42.7
MSTRG.4557 Avicennia marina HOM05D000278 ORTHO05D005754 2.1e-07 60.5 52 65.4
MSTRG.9277 Avicennia marina HOM05D000278 ORTHO05D005754 2.8e-07 60.1 52 63.5
CDE07G1852 Ceratophyllum demersum HOM05D000278 ORTHO05D005754 1.1e-06 58.2 51 62.7
Haze_26738 Corylus avellana HOM05D000278 ORTHO05D005754 1.1e-06 58.2 71 50.7


User provided reference genes

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