Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 4.0e-162 574.7 291 100.0
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 1.6e-115 419.9 276 80.1
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 8.2e-115 417.5 278 79.5
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 7.9e-110 401.0 276 77.2
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.0e-108 396.4 276 75.0
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 2.5e-108 396.0 276 73.9
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 2.5e-108 396.0 276 73.9
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 1.1e-106 390.6 276 73.2
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 5.3e-106 388.3 276 73.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.5e-105 386.7 276 72.8
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 1.5e-105 386.7 276 74.3
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 5.9e-105 384.8 279 71.3
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 1.3e-104 383.6 276 71.4
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.2e-104 382.9 279 71.0
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.9e-104 382.5 276 71.7
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.8e-104 382.1 276 72.1
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 5.0e-104 381.7 276 71.0
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 6.5e-104 381.3 276 72.5
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 1.4e-103 380.2 276 72.5
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 2.5e-103 379.4 276 72.1
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 3.6e-102 375.6 276 70.7
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 6.1e-102 374.8 280 69.3
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 1.0e-101 374.0 275 72.4
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 1.4e-101 373.6 274 72.6
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.8e-101 373.2 274 71.2
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 2.3e-101 372.9 276 71.4
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 6.7e-101 371.3 286 65.7
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.7e-101 371.3 279 68.8
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 6.7e-101 371.3 279 68.8
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 1.5e-100 370.2 276 70.7
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 2.0e-100 369.8 276 71.4
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 3.3e-100 369.0 276 70.7
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 4.4e-100 368.6 277 70.4
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 2.8e-99 365.9 279 68.8
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 4.8e-99 365.2 280 68.2
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 8.2e-99 364.4 277 67.9
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 8.2e-99 364.4 276 68.1
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 2.4e-98 362.8 276 69.9
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 7.0e-98 361.3 276 68.8
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.2e-97 360.5 276 68.5
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 5.9e-97 358.2 302 64.9
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 5.9e-97 358.2 276 68.1
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 7.7e-97 357.8 279 67.4
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 1.3e-96 357.1 277 69.0
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.3e-96 357.1 276 67.8
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 2.9e-96 355.9 279 68.8
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 1.1e-95 354.0 280 67.5
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 1.4e-95 353.6 279 68.1
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 2.5e-95 352.8 277 68.6
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 4.2e-95 352.1 277 65.7
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 4.2e-95 352.1 277 67.5
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 7.2e-95 351.3 278 67.3
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.6e-94 350.1 279 67.7
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.6e-94 350.1 279 67.7
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 4.7e-94 348.6 289 63.3
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 8.0e-94 347.8 277 65.7
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 8.0e-94 347.8 276 66.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 1.0e-93 347.4 276 67.4
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.8e-93 346.7 279 67.0
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 2.3e-93 346.3 281 64.4
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 3.0e-93 345.9 279 67.0
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 3.9e-93 345.5 276 65.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 6.7e-93 344.7 279 67.0
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 6.7e-93 344.7 279 65.2
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 6.7e-93 344.7 278 64.7
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.5e-92 343.6 275 64.7
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 5.7e-92 341.7 278 67.3
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 5.7e-92 341.7 278 67.3
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.7e-91 340.1 268 67.9
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.7e-91 340.1 288 63.9
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.1e-90 337.4 280 63.2
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 1.8e-90 336.7 278 66.9
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 2.4e-90 336.3 279 66.7
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 2.4e-90 336.3 275 66.5
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 4.1e-90 335.5 280 62.9
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 9.1e-90 334.3 313 60.7
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 9.1e-90 334.3 280 62.5
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 3.5e-89 332.4 277 63.2
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 5.9e-89 331.6 280 62.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 2.2e-88 329.7 276 63.4
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 2.9e-88 329.3 275 64.0
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 1.1e-87 327.4 276 64.5
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.1e-87 327.4 278 64.7
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 1.5e-87 327.0 278 62.6
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 1.9e-87 326.6 275 62.9
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 6.1e-86 321.6 277 65.0
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 8.0e-86 321.2 275 62.9
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 1.0e-85 320.9 261 66.3
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 1.4e-85 320.5 268 63.1
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 1.8e-85 320.1 259 66.8
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 2.3e-85 319.7 278 61.2
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 6.7e-85 318.2 263 63.1
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 7.5e-84 314.7 278 60.4
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 2.8e-83 312.8 286 60.5
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 6.3e-83 311.6 280 60.7
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 2.4e-82 309.7 276 60.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 4.1e-82 308.9 248 68.1
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 5.3e-82 308.5 278 62.2
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.0e-82 308.1 278 61.2
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 1.2e-81 307.4 264 63.3
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 2.0e-81 306.6 261 64.0
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 2.7e-81 306.2 235 70.6
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 5.9e-81 305.1 261 63.6
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 5.0e-80 302.0 277 58.8
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.2e-78 297.4 265 61.9
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 6.1e-78 295.0 269 61.0
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 1.4e-77 293.9 277 55.6
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.3e-77 293.1 261 62.1
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 1.5e-76 290.4 244 63.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 5.7e-76 288.5 278 55.8
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 2.2e-75 286.6 256 61.3
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 4.8e-75 285.4 270 57.8
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 1.8e-74 283.5 306 54.2
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 2.4e-74 283.1 277 55.6
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 3.1e-74 282.7 257 61.1
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 2.7e-73 279.6 268 56.7
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 2.8e-70 269.6 277 54.9
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 2.0e-65 253.4 203 67.5
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.4e-61 240.7 277 50.9
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.3e-61 240.0 275 50.9
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 4.0e-61 239.2 261 50.6
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 1.5e-60 237.3 261 49.4
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 1.5e-60 237.3 281 53.0
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 5.8e-60 235.3 255 54.5
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.2e-59 233.4 279 47.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 6.4e-59 231.9 239 54.0
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 3.2e-58 229.6 267 47.6
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 4.1e-58 229.2 148 77.0
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 1.2e-57 227.6 260 49.2
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 3.5e-57 226.1 153 75.2
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 3.5e-57 226.1 274 48.9
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 4.6e-57 225.7 274 49.3
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 7.8e-57 224.9 234 52.6
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.0e-56 224.6 150 71.3
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 1.1e-55 221.1 152 75.7
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 8.9e-53 211.5 148 70.9
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.0e-52 210.3 245 49.4
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 4.9e-51 205.7 218 55.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 2.4e-50 203.4 124 79.0
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 2.3e-48 196.8 244 47.5
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 2.0e-44 183.7 248 41.9
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 7.5e-44 181.8 269 41.3
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 1.3e-40 171.0 253 41.1
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 8.6e-40 168.3 312 37.8
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 8.4e-35 151.8 89 83.1
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 5.4e-34 149.1 265 37.4
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 3.9e-32 142.9 89 78.7
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 1.1e-26 124.8 76 73.7
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 1.8e-21 107.5 270 32.6
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 2.7e-17 93.6 60 75.0
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 2.3e-16 90.5 169 39.6
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 5.1e-16 89.4 185 36.8
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 6.9e-13 79.0 181 34.3
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 1.9e-07 60.8 226 28.8
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 9.6e-07 58.5 41 63.4
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 3.7e-06 56.6 37 64.9


User provided reference genes

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