Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 2.6e-76 288.9 170 100.0
CiPaw.10G040200 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.5e-36 156.8 173 55.5
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 1.4e-34 150.2 175 54.9
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.4e-26 123.6 172 50.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 3.0e-24 115.9 153 54.2
Dinv06180 Davidia involucrata HOM05D002974 ORTHO05D002992 1.1e-23 114.0 130 51.5
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 1.1e-23 114.0 157 46.5
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 1.9e-23 113.2 152 45.4
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 5.6e-23 111.7 155 50.3
Duzib128G1163 Durio zibethinus HOM05D002974 ORTHO05D002992 9.6e-23 110.9 144 52.8
Lalb_Chr24g0400351 Lupinus albus HOM05D002974 ORTHO05D002992 1.6e-22 110.2 166 44.6
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 1.6e-22 110.2 156 48.1
Lalb_Chr22g0357431 Lupinus albus HOM05D002974 ORTHO05D002992 2.1e-22 109.8 168 45.2
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 1.4e-21 107.1 173 50.3
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 1.4e-21 107.1 150 46.0
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 6.9e-21 104.8 162 43.8
CSS0032574 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.9e-21 104.4 150 45.3
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 8.9e-21 104.4 155 47.7
Potri.006G038900 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.9e-21 104.4 161 45.3
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.4e-20 102.4 154 45.5
Cpa.g.sc5.168 Carica papaya HOM05D002974 ORTHO05D002992 4.4e-20 102.1 190 39.5
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 7.6e-20 101.3 169 44.4
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.3e-19 100.5 166 41.6
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 1.3e-19 100.5 170 41.2
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.3e-19 100.5 171 46.8
CSS0001226 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 2.2e-19 99.8 151 43.7
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 3.8e-19 99.0 177 40.1
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 8.4e-19 97.8 171 40.4
PGR031G3974 Punica granatum HOM05D002974 ORTHO05D002992 1.1e-18 97.4 157 43.9
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 1.6e-17 93.6 146 44.5
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 1.0e-16 90.9 184 45.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 2.3e-16 89.7 163 46.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.0e-16 89.4 165 37.6
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 3.0e-16 89.4 141 43.3
Manes.09G004900 Manihot esculenta HOM05D002974 ORTHO05D002992 3.9e-16 89.0 168 35.1
Sabra06G0026200 Salix brachista HOM05D002974 ORTHO05D002992 6.6e-16 88.2 124 53.2
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 1.1e-15 87.4 157 38.9
Lj1g0016303 Lotus japonicus HOM05D002974 ORTHO05D002992 3.3e-15 85.9 154 40.3
Medtr7g089860 Medicago truncatula HOM05D002974 ORTHO05D002992 3.3e-15 85.9 164 41.5
TPR.G8953 Trifolium pratense HOM05D002974 ORTHO05D002992 7.3e-15 84.7 164 40.2
Gohir.A11G307100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.1e-14 83.2 157 42.0
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.1e-14 83.2 164 38.4
COL.COLO4_04711 Corchorus olitorius HOM05D002974 ORTHO05D002992 3.6e-14 82.4 127 44.1
CsaV3_4G029660 Cucumis sativus L. HOM05D002974 ORTHO05D002992 4.8e-14 82.0 157 40.1
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 4.8e-14 82.0 141 39.7
Psat3g078800 Pisum sativum HOM05D002974 ORTHO05D002992 4.8e-14 82.0 163 36.8
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 6.2e-14 81.6 143 42.0
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 1.1e-13 80.9 132 38.6
ClCG04G004500 Citrullus lanatus HOM05D002974 ORTHO05D002992 1.4e-13 80.5 153 45.8
Gorai.007G352700 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.8e-13 80.1 157 41.4
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 5.3e-13 78.6 168 44.0
Gohir.D11G322600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.2e-12 77.4 157 42.0
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 1.5e-12 77.0 146 37.0
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 9.9e-12 74.3 132 38.6
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 1.7e-11 73.6 167 32.9
Rhsim04G0111200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.2e-11 73.2 119 38.7
Rhsim04G0112500 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.2e-11 73.2 119 38.7
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 2.9e-11 72.8 70 57.1
Oeu029509.1 Olea europaea HOM05D002974 ORTHO05D002992 2.9e-11 72.8 167 32.3
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 3.8e-11 72.4 135 40.7
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 4.9e-11 72.0 159 35.8
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 4.9e-11 72.0 136 37.5
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.4e-11 71.6 155 32.3
TWI53G1119 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 6.4e-11 71.6 158 37.3
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 1.1e-10 70.9 136 36.8
MSTRG.26159 Avicennia marina HOM05D002974 ORTHO05D002992 1.4e-10 70.5 141 36.9
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.4e-10 69.7 137 40.9
ClCG10G016220 Citrullus lanatus HOM05D002974 ORTHO05D002992 3.2e-10 69.3 40 77.5
MELO3C009755.2 Cucumis melo HOM05D002974 ORTHO05D002992 3.2e-10 69.3 40 77.5
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 5.4e-10 68.6 135 39.3
Dinv12041 Davidia involucrata HOM05D002974 ORTHO05D002992 1.6e-09 67.0 96 50.0
SHI49841 Sapria himalayana HOM05D048774 ORTHO05D002992 1.6e-09 67.0 128 43.0
SHI50452 Sapria himalayana HOM05D048774 ORTHO05D002992 1.6e-09 67.0 128 43.0
Sed0004403 Sechium edule HOM05D002974 ORTHO05D002992 2.1e-09 66.6 68 54.4
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.7e-09 66.2 157 35.0
BcaB01g03488 Brassica carinata HOM05D002974 ORTHO05D002992 3.5e-09 65.9 92 47.8
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.5e-09 65.9 132 42.4
C04p02500 Brassica napus HOM05D002974 ORTHO05D002992 4.6e-09 65.5 95 50.5
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 4.6e-09 65.5 135 35.6
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 4.6e-09 65.5 143 36.4
Nitab4.5_0004588g0030 Nicotiana tabacum HOM05D015198 ORTHO05D002992 6.0e-09 65.1 165 33.9
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 6.0e-09 65.1 138 35.5
Peaxi162Scf00003g00491 Petunia axillaris HOM05D015198 ORTHO05D002992 1.3e-08 63.9 67 52.2
A05p02090 Brassica napus HOM05D002974 ORTHO05D002992 1.8e-08 63.5 93 46.2
BraA05t19205Z Brassica rapa HOM05D002974 ORTHO05D002992 1.8e-08 63.5 93 46.2
Sed0012008 Sechium edule HOM05D002974 ORTHO05D002992 1.8e-08 63.5 39 71.8
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 2.3e-08 63.2 141 34.8
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 3.0e-08 62.8 137 36.5
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 3.0e-08 62.8 142 35.9
FAN05G2143 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.0e-08 62.8 141 36.2
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 3.0e-08 62.8 157 35.7
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 3.9e-08 62.4 43 74.4
Zm00001eb369260 Zea mays HOM05D002974 ORTHO05D002992 3.9e-08 62.4 44 72.7
Ca_08391_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 5.1e-08 62.0 123 38.2
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 5.1e-08 62.0 61 54.1
CARHR166850 Cardamine hirsuta HOM05D002974 ORTHO05D002992 6.7e-08 61.6 165 35.8
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 6.7e-08 61.6 68 55.9
ATR1096G079 Amborella trichopoda HOM05D002974 ORTHO05D002992 1.1e-07 60.8 67 55.2
Os01g0808900 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 1.1e-07 60.8 41 75.6
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.5e-07 60.5 157 35.7
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 1.5e-07 60.5 69 52.2
FvH4_6g25410 Fragaria vesca HOM05D002974 ORTHO05D002992 1.9e-07 60.1 141 35.5
Os05g0390800 Oryza sativa ssp. japonica HOM05D002974 ORTHO05D002992 2.5e-07 59.7 41 73.2
PGSC0003DMG400008372 Solanum tuberosum HOM05D015198 ORTHO05D002992 2.5e-07 59.7 61 52.5
C03p27500 Brassica napus HOM05D002974 ORTHO05D002992 3.3e-07 59.3 96 49.0
BolC3t15126H Brassica oleracea HOM05D002974 ORTHO05D002992 3.3e-07 59.3 96 49.0
BolC4t21893H Brassica oleracea HOM05D002974 ORTHO05D002992 3.3e-07 59.3 96 49.0
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 3.3e-07 59.3 121 36.4
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 3.3e-07 59.3 52 59.6
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 3.3e-07 59.3 76 48.7
Thhalv10017346m.g Eutrema salsugineum HOM05D002974 ORTHO05D002992 4.3e-07 58.9 71 57.7
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 4.3e-07 58.9 61 52.5
Zm00001eb005210 Zea mays HOM05D002974 ORTHO05D002992 4.3e-07 58.9 62 53.2
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 5.6e-07 58.5 132 37.9
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 5.6e-07 58.5 57 59.6
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 5.6e-07 58.5 137 32.8
BcaC01g05357 Brassica carinata HOM05D002974 ORTHO05D002992 7.4e-07 58.2 96 49.0
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 7.4e-07 58.2 167 39.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.4e-07 58.2 40 77.5
SGA_v2.0_scaffold105G30292 Striga asiatica HOM05D002974 ORTHO05D002992 7.4e-07 58.2 71 43.7
SGA_v2.0_scaffold105G30310 Striga asiatica HOM05D002974 ORTHO05D002992 7.4e-07 58.2 71 43.7
BraA04t16084Z Brassica rapa HOM05D002974 ORTHO05D002992 9.6e-07 57.8 57 54.4
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 9.6e-07 57.8 132 36.4
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 9.6e-07 57.8 129 37.2
A03p23100 Brassica napus HOM05D002974 ORTHO05D002992 1.3e-06 57.4 61 52.5
BraA03t11531Z Brassica rapa HOM05D002974 ORTHO05D002992 1.3e-06 57.4 61 52.5
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.4 62 53.2
FAN02G0528 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.3e-06 57.4 141 34.0
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.3e-06 57.4 59 54.2
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.3e-06 57.4 59 54.2
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.3e-06 57.4 33 84.8
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 1.3e-06 57.4 33 84.8
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 1.3e-06 57.4 46 65.2
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.3e-06 57.4 118 39.8
Sp4g23480 Schrenkiella parvula HOM05D002974 ORTHO05D002992 1.3e-06 57.4 96 39.6
THA.LOC104816020 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.3e-06 57.4 162 34.0
BraA04t16085Z Brassica rapa HOM05D002974 ORTHO05D002992 1.6e-06 57.0 59 54.2
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 1.6e-06 57.0 126 33.3
FAN09G2803 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.6e-06 57.0 141 34.8
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.6e-06 57.0 59 54.2
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 1.6e-06 57.0 35 80.0
SalBow6G6653 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.6e-06 57.0 44 56.8
Solyc10g078440.2 Solanum lycopersicum HOM05D015198 ORTHO05D002992 1.6e-06 57.0 151 31.1
THA.LOC104824399 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.6e-06 57.0 171 33.9
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.6e-06 57.0 67 49.3
HPP92_028460 Vanilla planifolia HOM05D002974 ORTHO05D002992 1.6e-06 57.0 59 52.5
BcaC07g39979 Brassica carinata HOM05D002974 ORTHO05D002992 2.1e-06 56.6 65 53.8
C08p31950 Brassica napus HOM05D002974 ORTHO05D002992 2.1e-06 56.6 65 53.8
BolC8t50812H Brassica oleracea HOM05D002974 ORTHO05D002992 2.1e-06 56.6 65 53.8
Migut.K00136 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.1e-06 56.6 43 62.8
Lsat_1_v5_gn_5_156980 Lactuca sativa HOM05D002974 ORTHO05D002992 2.1e-06 56.6 126 38.1
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.1e-06 56.6 33 81.8
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.1e-06 56.6 78 46.2
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 2.1e-06 56.6 70 50.0
AL5G38080 Arabidopsis lyrata HOM05D002974 ORTHO05D002992 2.8e-06 56.2 75 45.3
BcaB02g07639 Brassica carinata HOM05D002974 ORTHO05D002992 2.8e-06 56.2 145 36.6
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 2.8e-06 56.2 56 53.6
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.8e-06 56.2 56 53.6
Carub.0005s2345 Capsella rubella HOM05D002974 ORTHO05D002992 3.7e-06 55.8 71 47.9
CARHR136270 Cardamine hirsuta HOM05D002974 ORTHO05D002992 3.7e-06 55.8 47 63.8
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 3.7e-06 55.8 84 41.7
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 3.7e-06 55.8 138 33.3
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 3.7e-06 55.8 37 73.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.7e-06 55.8 76 50.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.7e-06 55.8 76 50.0
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 3.7e-06 55.8 134 34.3
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 4.8e-06 55.5 55 54.5
AT3G56710 Arabidopsis thaliana HOM05D002974 ORTHO05D002992 6.2e-06 55.1 75 44.0
BcaC07g40124 Brassica carinata HOM05D002974 ORTHO05D002992 6.2e-06 55.1 58 56.9
A09p49560 Brassica napus HOM05D002974 ORTHO05D002992 6.2e-06 55.1 65 52.3
C06p23750 Brassica napus HOM05D002974 ORTHO05D002992 6.2e-06 55.1 170 32.4
BraA09t40409Z Brassica rapa HOM05D002974 ORTHO05D002992 6.2e-06 55.1 65 52.3
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.2e-06 55.1 45 62.2
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 6.2e-06 55.1 45 62.2
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 6.2e-06 55.1 37 73.0
BcaB02g08351 Brassica carinata HOM05D002974 ORTHO05D002992 8.1e-06 54.7 59 52.5
BcaC02g09865 Brassica carinata HOM05D002974 ORTHO05D002992 8.1e-06 54.7 54 57.4
BolC4t25225H Brassica oleracea HOM05D002974 ORTHO05D002992 8.1e-06 54.7 54 57.4
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 8.1e-06 54.7 129 35.7
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.1e-06 54.7 31 83.9
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 8.1e-06 54.7 31 83.9
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 8.1e-06 54.7 45 62.2
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 8.1e-06 54.7 53 56.6
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 8.1e-06 54.7 31 83.9


User provided reference genes

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