Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.9e-49 198.7 95 100.0
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.6e-27 124.8 75 82.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.0e-26 123.2 75 84.0
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 4.0e-26 121.3 75 80.0
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 8.8e-26 120.2 75 81.3
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 2.0e-25 119.0 75 78.7
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 2.6e-25 118.6 75 78.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.6e-25 118.6 75 81.3
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 3.3e-25 118.2 75 77.3
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 5.7e-25 117.5 75 77.3
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 5.7e-25 117.5 75 76.0
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.5e-25 117.1 75 77.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 1.3e-24 116.3 75 78.7
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.3e-24 116.3 75 80.0
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 2.2e-24 115.5 75 76.0
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.8e-24 115.2 75 76.0
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 6.3e-24 114.0 75 74.7
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 6.3e-24 114.0 75 77.3
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 6.3e-24 114.0 75 78.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 8.2e-24 113.6 75 74.7
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 1.1e-23 113.2 75 70.7
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 1.1e-23 113.2 75 76.0
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.4e-23 112.8 75 74.7
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.4e-23 112.8 75 73.3
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-23 112.8 77 74.0
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 1.8e-23 112.5 75 74.7
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 1.8e-23 112.5 75 74.7
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 1.8e-23 112.5 75 74.7
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 1.8e-23 112.5 75 73.3
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.8e-23 112.5 75 77.3
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 2.4e-23 112.1 75 73.3
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.4e-23 112.1 75 73.3
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 2.4e-23 112.1 76 73.7
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.1e-23 111.7 75 74.7
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 3.1e-23 111.7 75 76.0
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 3.1e-23 111.7 75 73.3
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 74.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 74.7
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 76.0
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 74.7
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 72.0
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 74.7
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 74.7
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.1e-23 111.3 75 76.0
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 5.3e-23 110.9 75 76.0
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 5.3e-23 110.9 75 76.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 7.0e-23 110.5 75 76.0
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 7.0e-23 110.5 75 73.3
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 7.0e-23 110.5 75 74.7
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.0e-23 110.5 75 76.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 7.0e-23 110.5 75 72.0
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 9.1e-23 110.2 75 73.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 1.2e-22 109.8 75 74.7
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 1.2e-22 109.8 75 72.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.2e-22 109.8 75 73.3
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 1.6e-22 109.4 75 74.7
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.6e-22 109.4 75 74.7
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 2.7e-22 108.6 75 70.7
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.7e-22 108.6 75 72.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 2.7e-22 108.6 75 74.7
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 5.9e-22 107.5 75 69.3
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 7.7e-22 107.1 75 70.7
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 7.7e-22 107.1 75 70.7
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 7.7e-22 107.1 75 73.3
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.0e-21 106.7 79 64.6
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.0e-21 106.7 75 69.3
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.0e-21 106.7 75 70.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.0e-21 106.7 75 69.3
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.3e-21 106.3 75 70.7
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.3e-21 106.3 75 70.7
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 1.3e-21 106.3 75 74.7
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.3e-21 106.3 75 72.0
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.7e-21 105.9 75 68.0
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.7e-21 105.9 75 70.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 1.7e-21 105.9 75 70.7
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.7e-21 105.9 75 69.3
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 1.7e-21 105.9 75 70.7
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 2.2e-21 105.5 75 70.7
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 2.2e-21 105.5 73 71.2
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 2.2e-21 105.5 76 72.4
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.2e-21 105.5 75 70.7
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 2.9e-21 105.1 75 69.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 69.3
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 68.0
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 72.0
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 72.0
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 69.3
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.8e-21 104.8 75 69.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 5.0e-21 104.4 75 70.7
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 5.0e-21 104.4 75 70.7
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 5.0e-21 104.4 75 70.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 5.0e-21 104.4 75 70.7
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 5.0e-21 104.4 75 70.7
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 6.5e-21 104.0 75 70.7
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 8.5e-21 103.6 75 66.7
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 1.1e-20 103.2 77 66.2
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-20 102.8 74 71.6
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 1.5e-20 102.8 75 73.3
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.9e-20 102.4 75 65.3
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 2.5e-20 102.1 75 69.3
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 3.2e-20 101.7 75 68.0
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 4.2e-20 101.3 75 68.0
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.2e-20 101.3 75 69.3
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.2e-20 101.3 75 69.3
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 4.2e-20 101.3 75 69.3
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 4.2e-20 101.3 75 69.3
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 5.5e-20 100.9 75 70.7
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 5.5e-20 100.9 75 70.7
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 7.2e-20 100.5 75 68.0
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 7.2e-20 100.5 75 66.7
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 9.4e-20 100.1 75 69.3
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 9.4e-20 100.1 75 66.7
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 9.4e-20 100.1 75 68.0
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 1.2e-19 99.8 75 68.0
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 1.2e-19 99.8 75 70.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 2.1e-19 99.0 75 66.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 2.1e-19 99.0 75 68.0
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 2.7e-19 98.6 75 68.0
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 4.7e-19 97.8 75 66.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 6.1e-19 97.4 75 68.0
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 6.1e-19 97.4 74 68.9
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.0e-19 97.1 78 61.5
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 1.0e-18 96.7 75 68.0
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 1.8e-18 95.9 75 62.7
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 4.0e-18 94.7 75 58.7
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 6.8e-18 94.0 71 66.2
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 5.7e-17 90.9 59 74.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 1.7e-16 89.4 75 61.3
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 2.8e-16 88.6 75 61.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.8e-15 85.9 75 61.3
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.8e-15 85.9 75 58.7
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 7.0e-15 84.0 108 48.1
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 5.9e-14 80.9 63 69.8
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.3e-13 79.7 63 68.3
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.3e-13 79.0 75 56.0
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 4.2e-12 74.7 66 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 8.0e-11 70.5 75 46.7
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.0e-11 70.5 44 81.8
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 1.4e-10 69.7 75 46.7
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 1.4e-10 69.7 75 44.0
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.6e-09 65.5 75 44.0
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 7.5e-09 63.9 81 42.0
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 9.8e-09 63.5 62 53.2
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 2.2e-08 62.4 79 43.0
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 3.7e-08 61.6 79 41.8
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.3e-08 60.5 73 54.8
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.1e-07 60.1 42 64.3
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 9.2e-07 57.0 42 61.9
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 2.7e-06 55.5 48 62.5
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 7.8e-06 53.9 50 52.0
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 7.8e-06 53.9 124 34.7


User provided reference genes

Program Settings