Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1272.3 620 100.0
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1270.4 620 99.8
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1229.9 620 97.1
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1196.0 620 94.0
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 2.4e-305 1051.6 583 90.6
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 6.2e-136 488.8 596 48.5
QL09p043548 Quercus lobata HOM05D002769 ORTHO05D010367 5.3e-103 379.4 608 42.4
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 9.6e-89 332.0 643 37.2
Haze_24738 Corylus avellana HOM05D009210 ORTHO05D010367 1.4e-87 328.2 289 60.2
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 4.6e-83 313.2 661 36.5
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 2.6e-78 297.4 455 39.8
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 1.4e-68 265.0 641 33.1
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 1.1e-63 248.8 486 37.0
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 1.4e-63 248.4 646 33.0
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 7.7e-54 216.1 523 33.7
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 5.0e-53 213.4 651 28.7
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 2.7e-51 207.6 507 30.8
Dinv19248 Davidia involucrata HOM05D009210 ORTHO05D010367 6.3e-48 196.4 365 36.2
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 3.8e-45 187.2 517 31.1
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 1.9e-44 184.9 437 30.9
Atru.chr5.1922 Acer truncatum HOM05D009210 ORTHO05D010367 2.5e-44 184.5 427 33.5
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 3.2e-44 184.1 513 31.6
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 3.6e-43 180.6 614 29.8
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 6.1e-43 179.9 685 27.4
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 1.8e-42 178.3 207 51.2
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 4.0e-42 177.2 506 30.6
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 2.0e-41 174.9 812 26.0
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 9.8e-41 172.6 707 26.9
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 1.1e-39 169.1 595 28.9
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 3.1e-39 167.5 393 32.6
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 4.5e-38 163.7 393 32.1
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 5.9e-38 163.3 656 29.1
MD10G1171500 Malus domestica HOM05D016859 ORTHO05D010367 1.0e-37 162.5 381 33.3
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 3.8e-37 160.6 419 30.8
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 1.1e-36 159.1 429 32.6
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 6.1e-35 153.3 363 32.5
CSS0048272 Camellia sinensis var. sinensis HOM05D009210 ORTHO05D010367 4.0e-34 150.6 504 28.4
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 5.0e-29 133.7 614 28.2
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 1.1e-28 132.5 665 25.6
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 4.3e-28 130.6 362 32.3
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 8.9e-26 122.9 307 32.9
QL09p043739 Quercus lobata HOM05D002769 ORTHO05D003160 1.2e-25 122.5 69 84.1
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 5.7e-25 120.2 574 24.6
Nitab4.5_0002330g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 4.6e-22 110.5 445 29.4
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 4.6e-22 110.5 241 33.2
Aqoxy5G00051 Aquilegia oxysepala HOM05D024193 ORTHO05D010367 6.6e-21 106.7 548 25.7
VMungo0720G0709 Vigna mungo HOM05D014010 ORTHO05D010367 1.2e-19 102.4 721 23.6
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 8.0e-19 99.8 250 31.2
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 1.0e-18 99.4 337 28.2
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 1.4e-18 99.0 277 28.5
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 1.4e-18 99.0 204 38.7
Nitab4.5_0001557g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 4.0e-18 97.4 445 27.4
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 6.8e-18 96.7 455 27.9
Sopen06g035070 Solanum pennellii HOM05D013334 ORTHO05D015998 1.2e-17 95.9 591 25.9
MBI10_g16802_MAGBIO Magnolia biondii HOM05D024193 ORTHO05D010367 2.0e-17 95.1 505 25.1
Duzib133G1530 Durio zibethinus HOM05D009210 ORTHO05D010367 4.4e-17 94.0 251 32.3
PSO764G0241 Papaver somniferum HOM05D024193 ORTHO05D010367 5.8e-17 93.6 305 29.8
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 7.5e-17 93.2 229 31.9
CAN.G771.49 Capsicum annuum HOM05D013334 ORTHO05D015998 1.1e-15 89.4 480 26.2
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 2.4e-15 88.2 423 27.4
MD10G1171600 Malus domestica HOM05D016859 ORTHO05D010367 3.2e-15 87.8 156 39.7
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 4.1e-15 87.4 260 30.4
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 7.0e-15 86.7 497 27.2
Aa31LG8G17240 Aethionema arabicum HOM05D012015 ORTHO05D014750 4.6e-14 84.0 433 28.6
SalBow6G1944 Salvia bowleyana HOM05D013334 ORTHO05D010367 1.0e-13 82.8 274 31.4
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 1.7e-13 82.0 184 33.2
PSO832G3586 Papaver somniferum HOM05D024193 ORTHO05D010367 2.3e-13 81.6 410 26.1
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 3.9e-13 80.9 442 26.2
HanXRQChr13g0408971 Helianthus annuus HOM05D040207 ORTHO05D010367 3.9e-13 80.9 428 26.2
AT2G20250 Arabidopsis thaliana HOM05D012015 ORTHO05D014750 5.0e-13 80.5 297 32.7
BraA09t36920Z Brassica rapa HOM05D012015 ORTHO05D014750 5.0e-13 80.5 523 25.6
Thhalv10001946m.g Eutrema salsugineum HOM05D012015 ORTHO05D014750 8.6e-13 79.7 294 30.6
A09p12760 Brassica napus HOM05D012015 ORTHO05D014750 5.6e-12 77.0 509 26.1
AL3G47840 Arabidopsis lyrata HOM05D012015 ORTHO05D014750 7.3e-12 76.6 524 26.7
DCAR_000542 Daucus carota HOM05D009210 ORTHO05D010367 4.7e-11 73.9 567 24.3
C09p15130 Brassica napus HOM05D012015 ORTHO05D014750 8.1e-11 73.2 521 25.9
Solyc06g083670.4 Solanum lycopersicum HOM05D013334 ORTHO05D015998 3.1e-10 71.2 394 26.4
BcaC04g22814 Brassica carinata HOM05D012015 ORTHO05D014750 1.2e-09 69.3 530 24.9
BcaNung04097 Brassica carinata HOM05D012015 ORTHO05D014750 1.5e-09 68.9 481 25.2
PGR044G0436 Punica granatum HOM05D009210 ORTHO05D010367 1.5e-09 68.9 158 34.2
Carub.0003s3458 Capsella rubella HOM05D012015 ORTHO05D014750 3.7e-08 64.3 290 26.9
ECA236G3347 Erigeron canadensis HOM05D040207 ORTHO05D010367 1.1e-07 62.8 255 27.8
GSVIVG01028482001 Vitis vinifera HOM05D009210 ORTHO05D010367 1.1e-07 62.8 63 54.0


User provided reference genes

Program Settings