Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 0.0e+00 2053.1 1083 100.0
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 5.4e-180 636.0 1159 41.1
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 2.0e-142 511.1 1138 37.3
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 5.9e-142 509.6 1096 37.7
Haze_19794 Corylus avellana HOM05D007911 ORTHO05D009536 1.0e-101 375.9 438 53.7
QL07p005404 Quercus lobata HOM05D007911 ORTHO05D009536 1.5e-84 318.9 335 60.0
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 3.6e-83 314.3 1096 31.1
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 7.8e-78 296.6 1155 31.2
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 1.6e-75 288.9 1100 28.9
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 3.6e-75 287.7 1096 29.7
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 1.8e-58 232.3 1082 25.9
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 3.1e-58 231.5 1102 27.5
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 1.2e-57 229.6 417 38.6
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 3.8e-56 224.6 417 38.4
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.9e-55 222.2 499 34.9
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 4.6e-54 217.6 1094 26.9
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 6.7e-53 213.8 436 35.6
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 6.7e-53 213.8 1092 27.0
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 8.2e-51 206.8 397 39.5
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 1.0e-45 189.9 427 35.6
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 5.3e-42 177.6 203 48.8
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 4.5e-41 174.5 214 46.7
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 2.9e-40 171.8 135 61.5
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 5.0e-40 171.0 147 61.2
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 8.5e-40 170.2 213 46.9
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 8.5e-40 170.2 151 58.9
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 1.4e-39 169.5 212 46.7
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 7.9e-38 163.7 1061 25.4
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 7.9e-38 163.7 267 40.4
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 5.1e-37 161.0 616 31.0
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.1e-36 159.8 197 49.7
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.3e-36 157.9 400 34.2
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 5.7e-36 157.5 443 33.2
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 9.7e-36 156.8 258 41.5
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.3e-35 156.4 279 36.6
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 2.8e-35 155.2 209 47.4
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 4.8e-35 154.5 276 39.9
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 8.2e-35 153.7 144 54.9
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.1e-34 153.3 400 33.5
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 3.1e-34 151.8 180 52.2
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.7e-32 146.0 358 35.5
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.2e-32 145.6 241 40.7
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 2.1e-30 139.0 286 38.5
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 7.9e-30 137.1 166 42.2
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 1.4e-29 136.3 210 40.5
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 2.3e-29 135.6 318 33.6
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 3.9e-29 134.8 429 31.5
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.5e-28 132.9 164 48.8
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 4.4e-28 131.3 357 32.5
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 1.3e-27 129.8 326 31.6
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 1.3e-27 129.8 279 37.3
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 1.7e-27 129.4 327 33.9
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.2e-27 129.0 152 48.7
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 4.8e-27 127.9 1101 24.9
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 8.2e-27 127.1 255 38.8
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 1.1e-26 126.7 144 47.9
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 4.1e-26 124.8 497 27.8
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 4.5e-25 121.3 322 32.3
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 2.9e-24 118.6 322 31.7
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 2.9e-24 118.6 133 51.1
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 3.8e-24 118.2 277 35.0
Atru.chr1.1237 Acer truncatum HOM05D007911 ORTHO05D009536 1.1e-23 116.7 359 30.9
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.5e-23 115.5 121 47.9
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 1.6e-22 112.8 239 34.7
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 4.7e-22 111.3 151 43.7
Duzib106G0470 Durio zibethinus HOM05D007911 ORTHO05D009536 6.1e-22 110.9 241 39.4
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 6.1e-22 110.9 160 41.9
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 1.4e-21 109.8 283 30.7
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 1.4e-21 109.8 115 49.6
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 1.1e-20 106.7 333 33.3
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 1.5e-20 106.3 151 43.7
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 3.3e-20 105.1 280 31.1
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 3.7e-19 101.7 130 40.8
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 1.8e-18 99.4 203 32.5
Ciclev10004930m.g Citrus clementina HOM05D007911 ORTHO05D044634 2.4e-18 99.0 403 29.3
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 2.4e-18 99.0 98 48.0
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 5.3e-18 97.8 300 32.7
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 2.6e-17 95.5 189 33.3
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 4.5e-17 94.7 299 32.8
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 1.0e-16 93.6 207 32.9
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 3.2e-15 88.6 207 33.8
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 1.2e-14 86.7 488 25.8
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 8.0e-14 84.0 299 30.8
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 1.8e-13 82.8 327 25.7
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 3.0e-13 82.0 297 31.0
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 3.0e-13 82.0 470 26.4
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 8.8e-13 80.5 289 31.8
Lalb_Chr25g0287301 Lupinus albus HOM05D007911 ORTHO05D009536 1.7e-11 76.3 157 33.8
Nitab4.5_0000677g0260 Nicotiana tabacum HOM05D029882 ORTHO05D009536 2.4e-10 72.4 85 49.4
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 4.1e-10 71.6 253 27.7
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 5.3e-10 71.2 61 52.5
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 2.0e-09 69.3 436 24.3
Ciclev10005612m.g Citrus clementina HOM05D007911 ORTHO05D044634 1.0e-08 67.0 221 32.6
Ah.04g151450 Amaranthus hybridus HOM05D021336 ORTHO05D009536 3.8e-08 65.1 278 26.6
Sopen10g030520 Solanum pennellii HOM05D029882 ORTHO05D037717 5.5e-07 61.2 113 38.9
Nitab4.5_0000677g0220 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.6e-06 59.7 171 29.8
PGSC0003DMG400029827 Solanum tuberosum HOM05D029882 ORTHO05D037717 8.0e-06 57.4 77 44.2
GSVIVG01033236001 Vitis vinifera HOM05D007911 ORTHO05D009536 8.0e-06 57.4 180 33.9


User provided reference genes

Program Settings