Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p001861 Quercus lobata HOM05D001739 ORTHO05D006605 2.9e-35 151.4 78 100.0
QL07p000806 Quercus lobata HOM05D001739 ORTHO05D006605 2.6e-15 85.1 53 83.0
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 9.8e-15 83.2 53 81.1
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 9.8e-15 83.2 53 81.1
CiPaw.09G038800 Carya illinoinensis HOM05D001739 ORTHO05D006605 4.1e-13 77.8 53 75.5
Medtr1g053255 Medicago truncatula HOM05D001739 ORTHO05D006605 1.6e-12 75.9 53 73.6
arahy.Tifrunner.gnm1.ann1.LXN0TE Arachis hypogaea HOM05D001739 ORTHO05D006605 3.5e-12 74.7 53 73.6
arahy.Tifrunner.gnm1.ann1.R22IQ0 Arachis hypogaea HOM05D001739 ORTHO05D006605 3.5e-12 74.7 53 73.6
Eucgr.K01741 Eucalyptus grandis HOM05D001739 ORTHO05D006605 3.5e-12 74.7 53 71.7
Eucgr.K01775 Eucalyptus grandis HOM05D001739 ORTHO05D006605 3.5e-12 74.7 53 71.7
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 4.6e-12 74.3 55 67.3
Dinv12499 Davidia involucrata HOM05D001739 ORTHO05D006605 7.8e-12 73.6 56 67.9
Ca_26352_v3 Cicer arietinum L. HOM05D001739 ORTHO05D006605 1.0e-11 73.2 53 73.6
MELO3C009801.2 Cucumis melo HOM05D001739 ORTHO05D006605 1.0e-11 73.2 56 66.1
CsaV3_3G040670 Cucumis sativus L. HOM05D001739 ORTHO05D006605 1.3e-11 72.8 53 66.0
Psat6g118760 Pisum sativum HOM05D001739 ORTHO05D006605 1.3e-11 72.8 53 69.8
BcaNung01063 Brassica carinata HOM05D001739 ORTHO05D006605 1.7e-11 72.4 52 67.3
Eucgr.K02004 Eucalyptus grandis HOM05D001739 ORTHO05D006605 1.7e-11 72.4 53 67.9
Manes.09G020800 Manihot esculenta HOM05D001739 ORTHO05D006605 1.7e-11 72.4 53 71.7
ClCG10G015770 Citrullus lanatus HOM05D001739 ORTHO05D006605 2.3e-11 72.0 53 67.9
Hma1.2p1_3124F.1_g332890 Hydrangea macrophylla HOM05D001739 ORTHO05D006605 2.3e-11 72.0 56 67.9
PGR142G2644 Punica granatum HOM05D001739 ORTHO05D006605 2.3e-11 72.0 53 66.0
Sed0004072 Sechium edule HOM05D001739 ORTHO05D006605 2.3e-11 72.0 52 69.2
Gohir.A11G312800 Gossypium hirsutum HOM05D001739 ORTHO05D006605 2.9e-11 71.6 53 69.8
Gohir.D11G329500 Gossypium hirsutum HOM05D001739 ORTHO05D006605 2.9e-11 71.6 53 69.8
Gorai.007G360700 Gossypium raimondii HOM05D001739 ORTHO05D006605 2.9e-11 71.6 53 69.8
Prupe.7G058600 Prunus persica HOM05D001739 ORTHO05D006605 2.9e-11 71.6 53 69.8
THA.LOC104804954 Tarenaya hassleriana HOM05D001739 ORTHO05D006605 2.9e-11 71.6 53 66.0
Aa31LG6G6730 Aethionema arabicum HOM05D001739 ORTHO05D006605 3.9e-11 71.2 52 65.4
Duzib093G0255 Durio zibethinus HOM05D001739 ORTHO05D006605 3.9e-11 71.2 53 67.9
MD12G1075000 Malus domestica HOM05D001739 ORTHO05D006605 3.9e-11 71.2 53 67.9
Thecc.05G152600 Theobroma cacao HOM05D001739 ORTHO05D006605 3.9e-11 71.2 53 69.8
CARHR230910 Cardamine hirsuta HOM05D001739 ORTHO05D006605 5.0e-11 70.9 52 65.4
TPR.G29097 Trifolium pratense HOM05D001739 ORTHO05D006605 5.0e-11 70.9 53 69.8
TWI74G0913 Tripterygium wilfordii HOM05D001739 ORTHO05D006605 5.0e-11 70.9 56 66.1
DCAR_009063 Daucus carota HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 62.3
Thhalv10024271m.g Eutrema salsugineum HOM05D001739 ORTHO05D006605 6.6e-11 70.5 52 65.4
FvH4_6g24030 Fragaria vesca HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 69.8
FAN02G3624 Fragaria x ananassa HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 69.8
FAN14G2551 Fragaria x ananassa HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 69.8
RcHm_v2.0_Chr3g0482611 Rosa chinensis HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 69.8
Sp7g21460 Schrenkiella parvula HOM05D001739 ORTHO05D006605 6.6e-11 70.5 52 65.4
vmacro07843 Vaccinium macrocarpon HOM05D001739 ORTHO05D006605 6.6e-11 70.5 53 67.9
MSTRG.19857 Avicennia marina HOM05D001739 ORTHO05D006605 8.6e-11 70.1 52 65.4
FAN05G1753 Fragaria x ananassa HOM05D001739 ORTHO05D006605 1.1e-10 69.7 53 67.9
Hma1.2p1_1041F.1_g250990 Hydrangea macrophylla HOM05D001739 ORTHO05D006605 1.1e-10 69.7 56 66.1
Peaxi162Scf00130g00214 Petunia axillaris HOM05D001739 ORTHO05D006605 1.1e-10 69.7 53 67.9
Rhsim03G0025300 Rhododendron simsii HOM05D001739 ORTHO05D006605 1.1e-10 69.7 53 67.9
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-10 69.7 53 67.9
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 1.1e-10 69.7 53 67.9
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.1e-10 69.7 53 67.9
BcaC09g50980 Brassica carinata HOM05D001739 ORTHO05D006605 1.5e-10 69.3 52 63.5
A01p14820 Brassica napus HOM05D001739 ORTHO05D006605 1.5e-10 69.3 52 63.5
C01p18510 Brassica napus HOM05D001739 ORTHO05D006605 1.5e-10 69.3 52 63.5
BolC1t01774H Brassica oleracea HOM05D001739 ORTHO05D006605 1.5e-10 69.3 52 63.5
BraA01t01423Z Brassica rapa HOM05D001739 ORTHO05D006605 1.5e-10 69.3 52 63.5
Rhsim09G0183100 Rhododendron simsii HOM05D001739 ORTHO05D006605 1.5e-10 69.3 53 67.9
GSVIVG01033265001 Vitis vinifera HOM05D001739 ORTHO05D006605 1.5e-10 69.3 53 66.0
AL7G29870 Arabidopsis lyrata HOM05D001739 ORTHO05D006605 1.9e-10 68.9 52 63.5
Potri.006G050000 Populus trichocarpa HOM05D001739 ORTHO05D006605 1.9e-10 68.9 52 69.2
Solyc04g015940.3 Solanum lycopersicum HOM05D001739 ORTHO05D006605 2.5e-10 68.6 56 64.3
Sopen04g007950 Solanum pennellii HOM05D001739 ORTHO05D006605 2.5e-10 68.6 53 67.9
AT4G23540 Arabidopsis thaliana HOM05D001739 ORTHO05D006605 3.3e-10 68.2 52 63.5
Carub.0007s1775 Capsella rubella HOM05D001739 ORTHO05D006605 3.3e-10 68.2 52 61.5
HanXRQChr10g0296671 Helianthus annuus HOM05D001739 ORTHO05D006605 3.3e-10 68.2 53 64.2
CSS0037723 Camellia sinensis var. sinensis HOM05D001739 ORTHO05D006605 5.6e-10 67.4 53 66.0
Ciclev10006456m.g Citrus clementina HOM05D001739 ORTHO05D006605 5.6e-10 67.4 53 67.9
Cc06_g17620 Coffea canephora HOM05D001739 ORTHO05D006605 5.6e-10 67.4 53 60.4
Lsat_1_v5_gn_9_30560 Lactuca sativa HOM05D001739 ORTHO05D006605 5.6e-10 67.4 53 62.3
CAN.G676.32 Capsicum annuum HOM05D001739 ORTHO05D006605 7.3e-10 67.0 53 66.0
Glyma.02G185000 Glycine max HOM05D001739 ORTHO05D006605 7.3e-10 67.0 53 67.9
Sabra06G0034900 Salix brachista HOM05D001739 ORTHO05D006605 7.3e-10 67.0 52 67.3
SalBow6G2278 Salvia bowleyana HOM05D001739 ORTHO05D006605 7.3e-10 67.0 52 61.5
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 9.5e-10 66.6 53 66.0
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 9.5e-10 66.6 53 60.4
Migut.J01753 Erythranthe guttata HOM05D001739 ORTHO05D006605 9.5e-10 66.6 52 61.5
TAR623G1060 Trochodendron aralioides HOM05D001739 ORTHO05D006605 9.5e-10 66.6 56 57.1
MD14G1073400 Malus domestica HOM05D005153 ORTHO05D006817 1.6e-09 65.9 53 62.3
Lju124C42G12 Lonicera japonica HOM05D001739 ORTHO05D006605 3.6e-09 64.7 52 61.5
Oeu033011.1 Olea europaea HOM05D001739 ORTHO05D006605 3.6e-09 64.7 53 60.4
HanXRQChr02g0038201 Helianthus annuus HOM05D001739 ORTHO05D006605 4.7e-09 64.3 53 62.3
SHI37393 Sapria himalayana HOM05D001739 ORTHO05D006605 1.4e-08 62.8 65 50.8
CANSAT80G2527 Cannabis sativa HOM05D001739 ORTHO05D006605 1.8e-08 62.4 53 58.5
CDE10G1259 Ceratophyllum demersum HOM05D001739 ORTHO05D006605 1.8e-08 62.4 56 51.8
HPP92_012087 Vanilla planifolia HOM05D001739 ORTHO05D006605 4.0e-08 61.2 56 53.6
Nn7g36309 Nelumbo nucifera HOM05D001739 ORTHO05D006605 8.9e-08 60.1 53 54.7
Hund24703 Selenicereus undatus HOM05D001739 ORTHO05D006605 8.9e-08 60.1 53 54.7
Sc13g0001700 Simmondsia chinensis HOM05D001739 ORTHO05D006605 8.9e-08 60.1 53 56.6
Os01g0957900 Oryza sativa ssp. japonica HOM05D001739 ORTHO05D006605 1.5e-07 59.3 56 50.0
Ah.13g076500 Amaranthus hybridus HOM05D001739 ORTHO05D006605 2.6e-07 58.5 53 54.7
Nitab4.5_0009615g0010 Nicotiana tabacum HOM05D001739 ORTHO05D006605 7.5e-07 57.0 40 70.0
Lalb_Chr21g0316501 Lupinus albus HOM05D001739 ORTHO05D006605 1.7e-06 55.8 41 70.7
Nitab4.5_0000586g0090 Nicotiana tabacum HOM05D001739 ORTHO05D006605 2.2e-06 55.5 38 71.1
Atru.chr1.1111 Acer truncatum HOM05D001739 ORTHO05D006605 2.9e-06 55.1 41 68.3
Lj5g0016851 Lotus japonicus HOM05D001739 ORTHO05D006605 3.7e-06 54.7 39 69.2
AUR62026046 Chenopodium quinoa HOM05D001739 ORTHO05D006605 4.9e-06 54.3 53 49.1
Phvul.007G252200 Phaseolus vulgaris HOM05D001739 ORTHO05D006605 4.9e-06 54.3 40 70.0
VMungo0720G2535 Vigna mungo HOM05D001739 ORTHO05D006605 6.4e-06 53.9 40 70.0
Zm00001eb140500 Zea mays HOM05D001739 ORTHO05D006605 6.4e-06 53.9 56 44.6


User provided reference genes

Program Settings