Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p001520 Quercus lobata HOM05D002233 ORTHO05D002299 5.1e-34 147.1 72 100.0
QL02p104232 Quercus lobata HOM05D002233 ORTHO05D002299 2.6e-22 108.2 59 91.5
QL07p001494 Quercus lobata HOM05D002233 ORTHO05D002299 7.6e-22 106.7 59 89.8
QL02p104225 Quercus lobata HOM05D002233 ORTHO05D002299 7.1e-20 100.1 59 84.7
Actinidia01648 Actinidia chinensis HOM05D002233 ORTHO05D002299 7.9e-19 96.7 51 90.2
QL02p104178 Quercus lobata HOM05D002233 ORTHO05D002299 1.8e-18 95.5 56 82.1
CiPaw.12G009500 Carya illinoinensis HOM05D002233 ORTHO05D002299 3.0e-18 94.7 58 79.3
CiPaw.12G009400 Carya illinoinensis HOM05D002233 ORTHO05D002299 1.1e-17 92.8 58 77.6
RcHm_v2.0_Chr7g0218231 Rosa chinensis HOM05D002233 ORTHO05D002299 1.1e-17 92.8 51 84.3
GSVIVG01023120001 Vitis vinifera HOM05D002233 ORTHO05D002299 7.4e-17 90.1 56 76.8
Manes.06G016600 Manihot esculenta HOM05D002233 ORTHO05D002299 2.2e-16 88.6 59 69.5
Haze_09949 Corylus avellana HOM05D002233 ORTHO05D002299 3.7e-16 87.8 54 81.5
GSVIVG01023109001 Vitis vinifera HOM05D002233 ORTHO05D002299 3.7e-16 87.8 52 78.8
Lj5A308T32 Lonicera japonica HOM05D002233 ORTHO05D002299 4.8e-16 87.4 52 80.8
Lj5A309T26 Lonicera japonica HOM05D002233 ORTHO05D002299 4.8e-16 87.4 54 74.1
Thecc.10G124900 Theobroma cacao HOM05D002233 ORTHO05D002299 4.8e-16 87.4 56 73.2
DCAR_022319 Daucus carota HOM05D002233 ORTHO05D002299 6.3e-16 87.0 56 73.2
Eucgr.D01135 Eucalyptus grandis HOM05D002233 ORTHO05D002299 1.8e-15 85.5 55 72.7
TAR628G0385 Trochodendron aralioides HOM05D002233 ORTHO05D002299 1.8e-15 85.5 52 76.9
Actinidia11715 Actinidia chinensis HOM05D002233 ORTHO05D002299 2.4e-15 85.1 51 78.4
RcHm_v2.0_Chr7g0218201 Rosa chinensis HOM05D002233 ORTHO05D002299 2.4e-15 85.1 51 80.4
GSVIVG01023110001 Vitis vinifera HOM05D002233 ORTHO05D002299 3.1e-15 84.7 52 78.8
FvH4_5g27160 Fragaria vesca HOM05D002233 ORTHO05D002299 4.1e-15 84.3 55 72.7
FAN18G0383 Fragaria x ananassa HOM05D002233 ORTHO05D002299 4.1e-15 84.3 55 72.7
Rhsim11G0113300 Rhododendron simsii HOM05D002233 ORTHO05D002299 9.0e-15 83.2 55 65.5
COL.COLO4_31202 Corchorus olitorius HOM05D002233 ORTHO05D002299 1.5e-14 82.4 56 71.4
Sed0028209 Sechium edule HOM05D002233 ORTHO05D002299 1.5e-14 82.4 58 70.7
Lsat_1_v5_gn_7_69741 Lactuca sativa HOM05D002233 ORTHO05D002299 2.0e-14 82.0 59 64.4
MD08G1250500 Malus domestica HOM05D002233 ORTHO05D002299 2.0e-14 82.0 54 70.4
TAR376G0291 Trochodendron aralioides HOM05D002233 ORTHO05D002299 2.0e-14 82.0 52 76.9
Nn5g27085 Nelumbo nucifera HOM05D002233 ORTHO05D002299 2.6e-14 81.6 54 74.1
Peaxi162Scf00194g00816 Petunia axillaris HOM05D002233 ORTHO05D002299 2.6e-14 81.6 54 72.2
CANSAT01G0677 Cannabis sativa HOM05D002233 ORTHO05D002299 3.4e-14 81.3 59 64.4
Dinv30979 Davidia involucrata HOM05D002233 ORTHO05D002299 3.4e-14 81.3 47 83.0
SalBow3G3421 Salvia bowleyana HOM05D002233 ORTHO05D002299 3.4e-14 81.3 53 71.7
SalBow3G4388 Salvia bowleyana HOM05D002233 ORTHO05D002299 3.4e-14 81.3 53 71.7
Potri.004G232600 Populus trichocarpa HOM05D002233 ORTHO05D002299 4.5e-14 80.9 56 69.6
Nitab4.5_0001085g0020 Nicotiana tabacum HOM05D002233 ORTHO05D002299 5.9e-14 80.5 52 75.0
Solyc01g102660.4 Solanum lycopersicum HOM05D002233 ORTHO05D002299 5.9e-14 80.5 52 75.0
PGSC0003DMG400018269 Solanum tuberosum HOM05D002233 ORTHO05D002299 5.9e-14 80.5 52 75.0
Ciclev10002464m.g Citrus clementina HOM05D002233 ORTHO05D002299 1.0e-13 79.7 54 68.5
ECA240G2358 Erigeron canadensis HOM05D002233 ORTHO05D002299 1.0e-13 79.7 55 69.1
PSO017G5434 Papaver somniferum HOM05D002233 ORTHO05D002299 1.3e-13 79.3 54 66.7
Sopen01g045070 Solanum pennellii HOM05D002233 ORTHO05D002299 1.3e-13 79.3 52 73.1
PGR142G0425 Punica granatum HOM05D002233 ORTHO05D002299 1.7e-13 79.0 57 63.2
Rhsim11G0112900 Rhododendron simsii HOM05D002233 ORTHO05D002299 1.7e-13 79.0 55 61.8
Ciclev10002463m.g Citrus clementina HOM05D002233 ORTHO05D002299 2.2e-13 78.6 54 66.7
Cc02_g36740 Coffea canephora HOM05D002233 ORTHO05D002299 2.2e-13 78.6 54 72.2
Glyma.17G003300 Glycine max HOM05D002233 ORTHO05D002299 2.9e-13 78.2 52 65.4
Lj9C241G3 Lonicera japonica HOM05D002233 ORTHO05D002299 2.9e-13 78.2 52 73.1
Prupe.1G587700 Prunus persica HOM05D002233 ORTHO05D002299 2.9e-13 78.2 54 68.5
Sed0002014 Sechium edule HOM05D002233 ORTHO05D002299 2.9e-13 78.2 57 64.9
TPR.G5944 Trifolium pratense HOM05D002233 ORTHO05D002299 2.9e-13 78.2 52 67.3
Gohir.A10G068200 Gossypium hirsutum HOM05D002233 ORTHO05D002299 3.8e-13 77.8 53 71.7
Gohir.D10G083000 Gossypium hirsutum HOM05D002233 ORTHO05D002299 3.8e-13 77.8 53 71.7
Gorai.011G090100 Gossypium raimondii HOM05D002233 ORTHO05D002299 3.8e-13 77.8 53 71.7
Rhsim05G0103400 Rhododendron simsii HOM05D002233 ORTHO05D000007 5.0e-13 77.4 55 61.8
Rhsim11G0112700 Rhododendron simsii HOM05D002233 ORTHO05D002299 5.0e-13 77.4 55 61.8
Duzib235G0539 Durio zibethinus HOM05D002233 ORTHO05D002299 6.5e-13 77.0 56 66.1
Nitab4.5_0004176g0020 Nicotiana tabacum HOM05D002233 ORTHO05D002299 6.5e-13 77.0 52 71.2
PGR142G3082 Punica granatum HOM05D002233 ORTHO05D002299 6.5e-13 77.0 57 61.4
TWI23G0539 Tripterygium wilfordii HOM05D002233 ORTHO05D002299 6.5e-13 77.0 51 70.6
CANSAT01G3100 Cannabis sativa HOM05D002233 ORTHO05D002299 8.5e-13 76.6 54 66.7
RcHm_v2.0_Chr7g0218251 Rosa chinensis HOM05D002233 ORTHO05D002299 1.1e-12 76.3 49 75.5
MD15G1445700 Malus domestica HOM05D002233 ORTHO05D002299 1.4e-12 75.9 54 66.7
Medtr4g134380 Medicago truncatula HOM05D002233 ORTHO05D002299 1.4e-12 75.9 52 65.4
TPR.G5979 Trifolium pratense HOM05D002233 ORTHO05D002299 1.4e-12 75.9 52 63.5
AT2G02380 Arabidopsis thaliana HOM05D002233 ORTHO05D002299 1.9e-12 75.5 54 63.0
TWI59G1044 Tripterygium wilfordii HOM05D002233 ORTHO05D002299 1.9e-12 75.5 56 66.1
CAN.G1379.24 Capsicum annuum HOM05D002233 ORTHO05D002299 2.5e-12 75.1 52 69.2
CsaV3_2G019530 Cucumis sativus L. HOM05D002233 ORTHO05D002299 3.2e-12 74.7 54 64.8
FAN08G2242 Fragaria x ananassa HOM05D002233 ORTHO05D002299 3.2e-12 74.7 65 61.5
vmacro01636 Vaccinium macrocarpon HOM05D002233 ORTHO05D002299 3.2e-12 74.7 51 68.6
Cc02_g36760 Coffea canephora HOM05D002233 ORTHO05D002299 4.2e-12 74.3 54 64.8
COL.COLO4_31204 Corchorus olitorius HOM05D002233 ORTHO05D002299 4.2e-12 74.3 54 66.7
Aqoxy6G00007 Aquilegia oxysepala HOM05D002233 ORTHO05D002299 5.5e-12 73.9 52 69.2
Medtr4g134370 Medicago truncatula HOM05D002233 ORTHO05D002299 5.5e-12 73.9 52 63.5
Phvul.003G089700 Phaseolus vulgaris HOM05D002233 ORTHO05D002299 5.5e-12 73.9 53 64.2
Cc02_g36750 Coffea canephora HOM05D002233 ORTHO05D002299 7.2e-12 73.6 54 64.8
MELO3C023224.2 Cucumis melo HOM05D002233 ORTHO05D002299 7.2e-12 73.6 55 69.1
VMungo1215G3410 Vigna mungo HOM05D002233 ORTHO05D002299 7.2e-12 73.6 52 67.3
FAN04G0855 Fragaria x ananassa HOM05D002233 ORTHO05D002299 9.4e-12 73.2 65 60.0
SGA_v2.0_scaffold401G50973 Striga asiatica HOM05D002233 ORTHO05D002299 9.4e-12 73.2 67 55.2
Ah.02g128620 Amaranthus hybridus HOM05D002233 ORTHO05D002299 1.2e-11 72.8 52 63.5
ClCG02G000340 Citrullus lanatus HOM05D002233 ORTHO05D002299 1.2e-11 72.8 57 64.9
arahy.Tifrunner.gnm1.ann1.ACQ7NG Arachis hypogaea HOM05D002233 ORTHO05D002299 1.6e-11 72.4 52 67.3
Psat2g129360 Pisum sativum HOM05D002233 ORTHO05D002299 1.6e-11 72.4 52 61.5
AL5G11610 Arabidopsis lyrata HOM05D002233 ORTHO05D002299 2.1e-11 72.0 54 57.4
BcaB07g30701 Brassica carinata HOM05D002233 ORTHO05D002299 2.7e-11 71.6 58 53.4
BcaC04g21527 Brassica carinata HOM05D001248 ORTHO05D002299 2.7e-11 71.6 58 53.4
A09p23870 Brassica napus HOM05D002233 ORTHO05D002299 2.7e-11 71.6 58 53.4
C09p30730 Brassica napus HOM05D002233 ORTHO05D002299 2.7e-11 71.6 58 53.4
BolC9t55937H Brassica oleracea HOM05D002233 ORTHO05D002299 2.7e-11 71.6 58 53.4
BraA09t37992Z Brassica rapa HOM05D002233 ORTHO05D002299 2.7e-11 71.6 58 53.4
PSO017G3588 Papaver somniferum HOM05D002233 ORTHO05D002299 2.7e-11 71.6 53 62.3
AT2G02390 Arabidopsis thaliana HOM05D002233 ORTHO05D002299 3.6e-11 71.2 54 59.3
AUR62032505 Chenopodium quinoa HOM05D002233 ORTHO05D002299 3.6e-11 71.2 51 64.7
Lsat_1_v5_gn_9_81781 Lactuca sativa HOM05D002233 ORTHO05D002299 3.6e-11 71.2 52 65.4
Lsat_1_v5_gn_9_81801 Lactuca sativa HOM05D002233 ORTHO05D002299 3.6e-11 71.2 52 65.4
Carub.0005s0143 Capsella rubella HOM05D002233 ORTHO05D002299 4.6e-11 70.9 54 59.3
CAN.G1379.25 Capsicum annuum HOM05D002233 ORTHO05D002299 4.6e-11 70.9 56 62.5
CsaV3_2G019500 Cucumis sativus L. HOM05D002233 ORTHO05D002299 6.1e-11 70.5 58 62.1
VMungo1215G2397 Vigna mungo HOM05D002233 ORTHO05D002299 6.1e-11 70.5 52 59.6
AL5G11620 Arabidopsis lyrata HOM05D002233 ORTHO05D002299 1.0e-10 69.7 54 57.4
ATR0810G141 Amborella trichopoda HOM05D002233 ORTHO05D002299 1.4e-10 69.3 52 57.7
Glyma.17G003200 Glycine max HOM05D002233 ORTHO05D002299 1.4e-10 69.3 52 65.4
MSTRG.27894 Avicennia marina HOM05D002233 ORTHO05D002299 1.8e-10 68.9 54 63.0
Ca_02850_v3 Cicer arietinum L. HOM05D002233 ORTHO05D002299 1.8e-10 68.9 52 61.5
Aa31LG2G7710 Aethionema arabicum HOM05D002233 ORTHO05D002299 2.3e-10 68.6 54 57.4
Carub.0005s0144 Capsella rubella HOM05D002233 ORTHO05D002299 2.3e-10 68.6 54 55.6
Thhalv10004880m.g Eutrema salsugineum HOM05D002233 ORTHO05D002299 2.3e-10 68.6 54 53.7
Sp2g13660 Schrenkiella parvula HOM05D002233 ORTHO05D002299 2.3e-10 68.6 54 55.6
Aa31LG2G7700 Aethionema arabicum HOM05D002233 ORTHO05D002299 3.0e-10 68.2 57 52.6
CARHR215290 Cardamine hirsuta HOM05D002233 ORTHO05D002299 3.9e-10 67.8 58 51.7
MBI04_g35275_MAGBIO Magnolia biondii HOM05D002233 ORTHO05D002299 3.9e-10 67.8 55 52.7
Os12g0210200 Oryza sativa ssp. japonica HOM05D002233 ORTHO05D002299 3.9e-10 67.8 51 58.8
Os11g0245100 Oryza sativa ssp. japonica HOM05D002233 ORTHO05D002299 5.1e-10 67.4 50 62.0
CDE04G1228 Ceratophyllum demersum HOM05D002233 ORTHO05D002299 6.7e-10 67.0 52 61.5
Lj4g0015462 Lotus japonicus HOM05D002233 ORTHO05D002299 8.8e-10 66.6 53 58.5
Lalb_Chr21g0314421 Lupinus albus HOM05D002233 ORTHO05D002299 8.8e-10 66.6 52 55.8
Lalb_Chr21g0314441 Lupinus albus HOM05D002233 ORTHO05D002299 8.8e-10 66.6 52 55.8
Zm00001eb411190 Zea mays HOM05D002233 ORTHO05D002299 8.8e-10 66.6 51 58.8
Os12g0210300 Oryza sativa ssp. japonica HOM05D002233 ORTHO05D002299 1.5e-09 65.9 50 58.0
THA.LOC104801774 Tarenaya hassleriana HOM05D002233 ORTHO05D002299 2.0e-09 65.5 54 57.4
BcaC06g31235 Brassica carinata HOM05D002233 ORTHO05D002299 2.5e-09 65.1 58 48.3
A06p43650 Brassica napus HOM05D002233 ORTHO05D002299 3.3e-09 64.7 58 48.3
BraA06t27247Z Brassica rapa HOM05D002233 ORTHO05D002299 3.3e-09 64.7 58 48.3
Cc02_g36720 Coffea canephora HOM05D002233 ORTHO05D002299 5.7e-09 63.9 52 55.8
C07p33210 Brassica napus HOM05D002233 ORTHO05D002299 7.4e-09 63.5 58 46.6
Thhalv10004878m.g Eutrema salsugineum HOM05D002233 ORTHO05D002299 1.3e-08 62.8 54 48.1
HanXRQChr02g0050171 Helianthus annuus HOM05D002233 ORTHO05D002299 1.3e-08 62.8 54 55.6
MBI06_g17058_MAGBIO Magnolia biondii HOM05D002233 ORTHO05D002299 1.3e-08 62.8 52 55.8
ATR1089G131 Amborella trichopoda HOM05D002233 ORTHO05D002299 1.7e-08 62.4 53 60.4
BcaC06g34055 Brassica carinata HOM05D002233 ORTHO05D002299 1.7e-08 62.4 58 46.6
BolC7t43832H Brassica oleracea HOM05D002233 ORTHO05D002299 1.7e-08 62.4 58 46.6
Aa31LG2G7680 Aethionema arabicum HOM05D002233 ORTHO05D002299 3.7e-08 61.2 51 54.9
AUR62024246 Chenopodium quinoa HOM05D002233 ORTHO05D002299 3.7e-08 61.2 49 53.1
Os02g0564000 Oryza sativa ssp. japonica HOM05D002233 ORTHO05D002299 3.7e-08 61.2 51 52.9
Hund27346 Selenicereus undatus HOM05D002233 ORTHO05D002299 3.7e-08 61.2 51 52.9
Glyma.01G142800 Glycine max HOM05D002233 ORTHO05D002299 4.8e-08 60.8 53 50.9
Nitab4.5_0005372g0090 Nicotiana tabacum HOM05D002233 ORTHO05D002299 4.8e-08 60.8 55 50.9
HPP92_005604 Vanilla planifolia HOM05D002233 ORTHO05D002299 4.8e-08 60.8 54 55.6
Aa31LG2G7720 Aethionema arabicum HOM05D002233 ORTHO05D002299 6.3e-08 60.5 49 55.1
A02p32810 Brassica napus HOM05D002233 ORTHO05D002299 6.3e-08 60.5 54 48.1
FAN01G2849 Fragaria x ananassa HOM05D002233 ORTHO05D002299 6.3e-08 60.5 52 51.9
PGSC0003DMG400012762 Solanum tuberosum HOM05D002233 ORTHO05D002299 1.4e-07 59.3 54 46.3
CsaV3_3G009690 Cucumis sativus L. HOM05D002233 ORTHO05D002299 1.8e-07 58.9 49 55.1
BcaB07g30340 Brassica carinata HOM05D002233 ORTHO05D002299 3.1e-07 58.2 54 48.1
Carub.0002s1531 Capsella rubella HOM05D002233 ORTHO05D002299 3.1e-07 58.2 57 47.4
Potri.014G069600 Populus trichocarpa HOM05D002233 ORTHO05D002299 3.1e-07 58.2 52 48.1
Sed0015749 Sechium edule HOM05D002233 ORTHO05D002299 3.1e-07 58.2 52 48.1
ClCG05G002230 Citrullus lanatus HOM05D002233 ORTHO05D002299 4.1e-07 57.8 63 46.0
HanXRQChr02g0052711 Helianthus annuus HOM05D002233 ORTHO05D002299 4.1e-07 57.8 50 48.0
HanXRQChr16g0527581 Helianthus annuus HOM05D002233 ORTHO05D002299 4.1e-07 57.8 50 48.0
RcHm_v2.0_Chr1g0350551 Rosa chinensis HOM05D002233 ORTHO05D002299 4.1e-07 57.8 52 50.0
HPP92_009192 Vanilla planifolia HOM05D002233 ORTHO05D002299 4.1e-07 57.8 54 50.0
EL10Ac1g00889 Beta vulgaris HOM05D002233 ORTHO05D002299 5.3e-07 57.4 49 53.1
C02p50500 Brassica napus HOM05D002233 ORTHO05D002299 5.3e-07 57.4 54 46.3
Cpa.g.sc18.114 Carica papaya HOM05D002233 ORTHO05D002299 5.3e-07 57.4 53 49.1
FvH4_7g11880 Fragaria vesca HOM05D002233 ORTHO05D002299 5.3e-07 57.4 52 50.0
FAN06G1518 Fragaria x ananassa HOM05D002233 ORTHO05D002299 5.3e-07 57.4 52 50.0
FAN10G0740 Fragaria x ananassa HOM05D002233 ORTHO05D002299 5.3e-07 57.4 52 50.0
EL10Ac1g00891 Beta vulgaris HOM05D002233 ORTHO05D002299 6.9e-07 57.0 49 53.1
Peaxi162Scf00021g01724 Petunia axillaris HOM05D002233 ORTHO05D002299 6.9e-07 57.0 55 45.5
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 9.1e-07 56.6 52 50.0
unitig_8.g3612 Utricularia gibba HOM05D002233 ORTHO05D002299 9.1e-07 56.6 51 52.9
VMungo0331G0072 Vigna mungo HOM05D002233 ORTHO05D002299 9.1e-07 56.6 52 51.9
CSS0009949 Camellia sinensis var. sinensis HOM05D002233 ORTHO05D002299 1.2e-06 56.2 52 48.1
FAN03G3302 Fragaria x ananassa HOM05D002233 ORTHO05D002299 1.2e-06 56.2 48 54.2
Phvul.010G084100 Phaseolus vulgaris HOM05D002233 ORTHO05D002299 1.2e-06 56.2 50 50.0
SEGI_09230 Sequoiadendron giganteum HOM05D002233 ORTHO05D002299 1.2e-06 56.2 49 49.0
CAN.G388.16 Capsicum annuum HOM05D002233 ORTHO05D002299 1.5e-06 55.8 55 45.5
TWI23G0377 Tripterygium wilfordii HOM05D002233 ORTHO05D002299 1.5e-06 55.8 32 78.1
MELO3C006189.2 Cucumis melo HOM05D002233 ORTHO05D002299 2.6e-06 55.1 63 44.4
Manes.01G266000 Manihot esculenta HOM05D002233 ORTHO05D002299 3.4e-06 54.7 52 46.2
PSO478G2080 Papaver somniferum HOM05D002233 ORTHO05D002299 3.4e-06 54.7 53 47.2
PSO782G1709 Papaver somniferum HOM05D002233 ORTHO05D002299 3.4e-06 54.7 53 47.2
Solyc01g091330.4 Solanum lycopersicum HOM05D002233 ORTHO05D002299 3.4e-06 54.7 52 44.2
Sopen01g037070 Solanum pennellii HOM05D002233 ORTHO05D002299 3.4e-06 54.7 52 44.2
Ciclev10022030m.g Citrus clementina HOM05D002233 ORTHO05D002299 4.5e-06 54.3 53 45.3
ECA238G3078 Erigeron canadensis HOM05D002233 ORTHO05D002299 4.5e-06 54.3 52 50.0
HanXRQChr14g0445481 Helianthus annuus HOM05D002233 ORTHO05D002299 5.9e-06 53.9 48 50.0
Prupe.2G145300 Prunus persica HOM05D002233 ORTHO05D002299 5.9e-06 53.9 52 46.2
COL.COLO4_12547 Corchorus olitorius HOM05D002233 ORTHO05D002299 7.7e-06 53.5 52 46.2
Gohir.A12G101900 Gossypium hirsutum HOM05D002233 ORTHO05D002299 7.7e-06 53.5 52 44.2
PSO782G3938 Papaver somniferum HOM05D002233 ORTHO05D002299 7.7e-06 53.5 49 51.0
Thecc.01G376300 Theobroma cacao HOM05D002233 ORTHO05D002299 7.7e-06 53.5 52 46.2


User provided reference genes

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