Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 1.2e-278 962.6 528 100.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 8.0e-161 571.2 523 65.6
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 4.6e-156 555.4 529 64.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.8e-156 554.7 525 62.9
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 5.0e-155 552.0 531 63.7
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 6.2e-145 518.5 511 57.9
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 8.9e-144 514.6 540 56.1
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 3.7e-142 509.2 513 57.5
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.2e-140 504.2 534 54.5
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.6e-140 503.8 515 57.3
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.9e-139 499.2 514 58.0
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 3.3e-138 496.1 514 56.8
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 1.2e-137 494.2 513 58.7
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.1e-137 491.5 518 56.4
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 8.9e-136 488.0 515 56.9
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 1.5e-135 487.3 528 58.3
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 5.8e-135 485.3 515 56.9
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 3.2e-133 479.6 537 52.9
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 9.2e-133 478.0 532 57.9
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 2.7e-132 476.5 518 55.4
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.7e-131 473.8 505 56.6
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 7.3e-130 468.4 521 55.7
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 4.7e-129 465.7 526 53.4
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 2.0e-127 460.3 549 53.4
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 2.2e-126 456.8 542 55.9
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 2.4e-125 453.4 522 55.6
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 9.3e-125 451.4 531 57.3
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.7e-123 447.2 515 54.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.0e-123 446.4 522 55.2
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 5.6e-122 442.2 515 54.4
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 9.6e-122 441.4 514 52.5
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 3.1e-120 436.4 503 54.1
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-119 434.5 507 57.4
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 1.5e-119 434.1 538 54.1
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 2.0e-119 433.7 502 50.2
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 4.5e-119 432.6 543 51.6
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 3.8e-118 429.5 503 52.3
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 4.9e-118 429.1 543 50.6
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.1e-117 427.9 517 51.8
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-117 427.9 502 50.0
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.1e-117 427.9 468 55.6
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.4e-117 426.8 510 56.1
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 2.4e-117 426.8 504 53.6
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 3.2e-117 426.4 490 55.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.2e-117 426.4 498 50.2
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.2e-116 424.5 511 55.8
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.2e-116 424.5 505 50.9
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 1.8e-115 420.6 515 54.6
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 1.8e-115 420.6 511 51.9
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.9e-115 419.5 503 49.9
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 8.7e-115 418.3 542 48.3
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 4.8e-113 412.5 361 61.2
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 9.0e-112 408.3 502 47.8
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 1.5e-111 407.5 445 56.4
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 4.5e-111 406.0 502 49.4
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 1.3e-110 404.4 494 51.2
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 2.2e-110 403.7 512 49.2
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 2.9e-110 403.3 460 52.4
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 2.5e-109 400.2 501 48.5
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.2e-109 399.8 359 62.1
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 1.6e-108 397.5 514 48.2
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.7e-108 396.7 507 49.3
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 2.7e-108 396.7 508 48.8
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.0e-107 394.8 502 48.4
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.8e-107 394.0 511 51.7
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 1.8e-107 394.0 410 55.1
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.9e-107 392.9 515 50.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 5.1e-107 392.5 454 56.2
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.7e-107 392.1 526 49.0
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 4.3e-106 389.4 505 49.3
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 5.6e-106 389.0 501 48.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.0e-104 382.9 397 54.9
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.6e-103 378.6 514 47.7
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.3e-102 377.9 501 45.7
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 1.7e-102 377.5 506 45.8
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 3.8e-102 376.3 507 45.8
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 3.8e-102 376.3 497 50.1
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 4.9e-102 375.9 509 47.9
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 1.1e-101 374.8 505 46.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.6e-100 370.9 454 48.2
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 2.5e-98 363.6 462 47.8
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 7.4e-98 362.1 502 47.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 1.3e-97 361.3 499 49.3
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.3e-97 361.3 355 56.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.7e-97 359.8 369 53.4
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 1.1e-96 358.2 466 47.2
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 2.4e-96 357.1 431 49.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 4.1e-96 356.3 463 47.3
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 5.9e-95 352.4 511 44.0
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.9e-94 350.1 365 52.9
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 4.2e-93 346.3 374 53.2
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 3.6e-92 343.2 447 48.8
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 3.0e-91 340.1 448 47.5
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 3.9e-91 339.7 374 52.9
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 5.1e-91 339.3 423 48.2
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 7.4e-90 335.5 455 48.6
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 1.3e-89 334.7 441 47.2
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 1.3e-89 334.7 441 47.2
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 1.3e-89 334.7 441 47.2
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 3.7e-89 333.2 464 45.5
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 1.1e-88 331.6 503 43.7
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 6.9e-88 328.9 351 53.3
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.6e-87 327.0 447 46.8
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 3.4e-87 326.6 452 44.9
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 3.4e-87 326.6 452 44.9
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 3.4e-87 326.6 452 44.9
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 4.5e-87 326.2 484 43.8
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 4.5e-87 326.2 501 43.7
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.2e-86 323.9 421 46.3
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.9e-85 320.9 503 44.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.1e-84 317.4 422 46.0
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 1.0e-83 315.1 502 43.4
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.9e-83 313.2 368 51.6
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 1.5e-82 311.2 516 42.8
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-82 310.8 370 49.7
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 2.0e-82 310.8 368 50.3
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 3.3e-82 310.1 501 42.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 3.3e-82 310.1 501 42.9
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.7e-81 306.6 398 47.0
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.1e-80 305.1 484 41.7
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.4e-80 304.7 316 54.4
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 1.8e-80 304.3 373 49.3
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 7.7e-79 298.9 501 42.7
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 1.1e-77 295.0 390 47.4
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 7.2e-77 292.4 332 52.7
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 8.0e-76 288.9 389 47.8
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 3.0e-75 287.0 519 38.3
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 3.9e-75 286.6 346 51.2
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.0e-74 284.3 452 43.1
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 3.1e-72 276.9 512 39.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.3e-70 271.6 315 49.8
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.3e-70 271.6 435 41.8
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.5e-69 268.1 242 62.0
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 2.7e-68 263.8 342 48.2
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.6e-60 238.0 438 37.0
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 2.1e-60 237.7 301 47.8
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.8e-59 234.6 280 49.6
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 8.8e-59 232.3 441 34.9
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-58 231.9 527 34.5
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-58 231.9 527 34.5
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 7.5e-50 202.6 483 34.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.0e-39 166.4 506 29.4
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-38 165.2 505 28.9
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.9e-38 163.7 233 40.8
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.6e-38 162.9 186 51.1
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.6e-36 157.1 192 49.0
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 6.2e-36 156.4 307 35.2
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 3.7e-33 147.1 169 51.5
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.4e-32 145.2 425 28.2
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.2e-32 144.1 554 24.9
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 2.1e-31 141.4 300 34.0
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.9e-29 134.8 126 55.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.3e-29 133.7 339 30.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.8e-28 131.0 554 24.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 3.6e-28 130.6 578 24.2
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.5e-23 114.0 254 28.0
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 1.4e-19 102.1 153 43.1
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.4e-16 92.0 134 41.0
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.9e-16 91.7 83 53.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 9.3e-16 89.4 94 51.1
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.1e-11 75.9 58 65.5
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.9e-06 57.4 55 41.8


User provided reference genes

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