Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000584 Quercus lobata HOM05D007273 ORTHO05D009230 3.1e-148 528.5 271 100.0
Haze_19853 Corylus avellana HOM05D007273 ORTHO05D009230 1.3e-85 320.5 260 68.5
Cfa016813 Carpinus fangiana HOM05D007273 ORTHO05D009230 1.8e-84 316.6 267 67.8
CiPaw.09G038500 Carya illinoinensis HOM05D007273 ORTHO05D009230 3.8e-82 308.9 243 70.4
Prupe.7G059600 Prunus persica HOM05D007273 ORTHO05D009230 5.2e-79 298.5 239 66.9
Medtr7g091490 Medicago truncatula HOM05D007273 ORTHO05D009230 2.0e-75 286.6 264 61.7
FAN05G2271 Fragaria x ananassa HOM05D007273 ORTHO05D009230 1.3e-74 283.9 252 63.9
Psat3g072760 Pisum sativum HOM05D007273 ORTHO05D009230 1.3e-74 283.9 244 62.7
RcHm_v2.0_Chr3g0482541 Rosa chinensis HOM05D007273 ORTHO05D009230 1.7e-74 283.5 251 62.9
FvH4_6g23860 Fragaria vesca HOM05D007273 ORTHO05D009230 3.8e-74 282.3 252 63.9
Ca_08456_v3 Cicer arietinum L. HOM05D007273 ORTHO05D009230 5.0e-74 282.0 230 67.0
Lj1g0021019 Lotus japonicus HOM05D007273 ORTHO05D009230 4.2e-73 278.9 250 63.6
CANSAT80G0412 Cannabis sativa HOM05D007273 ORTHO05D009230 5.5e-73 278.5 260 63.1
CANSAT80G2704 Cannabis sativa HOM05D007273 ORTHO05D009230 5.5e-73 278.5 260 63.1
ClCG04G000150 Citrullus lanatus HOM05D007273 ORTHO05D009230 5.5e-73 278.5 238 65.1
CsaV3_4G011670 Cucumis sativus L. HOM05D007273 ORTHO05D009230 2.3e-71 273.1 226 66.8
Phvul.001G131900 Phaseolus vulgaris HOM05D007273 ORTHO05D009230 2.3e-71 273.1 253 62.8
VMungo1383G0084 Vigna mungo HOM05D007273 ORTHO05D009230 3.0e-71 272.7 238 64.7
Glyma.03G136600 Glycine max HOM05D007273 ORTHO05D009230 2.0e-70 270.0 238 63.4
Eucgr.A02345 Eucalyptus grandis HOM05D007273 ORTHO05D009230 3.1e-68 262.7 260 56.9
TWI74G1215 Tripterygium wilfordii HOM05D007273 ORTHO05D009230 2.0e-67 260.0 256 56.2
arahy.Tifrunner.gnm1.ann1.J7IQUN Arachis hypogaea HOM05D007273 ORTHO05D009230 4.5e-67 258.8 239 61.5
Sabra06G0036200 Salix brachista HOM05D007273 ORTHO05D009230 4.5e-67 258.8 262 58.0
Gorai.006G136300 Gossypium raimondii HOM05D007273 ORTHO05D009230 1.7e-66 256.9 261 57.5
Gohir.D09G118000 Gossypium hirsutum HOM05D007273 ORTHO05D009230 2.2e-66 256.5 248 59.3
Lalb_Chr01g0017311 Lupinus albus HOM05D007273 ORTHO05D009230 5.0e-66 255.4 246 61.0
Thecc.05G153100 Theobroma cacao HOM05D007273 ORTHO05D009230 6.5e-66 255.0 252 57.9
Gohir.A09G121900 Gossypium hirsutum HOM05D007273 ORTHO05D009230 1.1e-65 254.2 234 59.8
COL.COLO4_28286 Corchorus olitorius HOM05D007273 ORTHO05D009230 1.5e-65 253.8 235 59.6
PGR004G1947 Punica granatum HOM05D007273 ORTHO05D009230 1.9e-65 253.4 204 66.7
Sed0019353 Sechium edule HOM05D007273 ORTHO05D009230 3.6e-64 249.2 237 60.3
Cpa.g.sc92.54 Carica papaya HOM05D007273 ORTHO05D009230 6.1e-64 248.4 230 60.9
Potri.006G051600 Populus trichocarpa HOM05D007273 ORTHO05D009230 5.2e-63 245.4 252 57.1
Manes.09G022200 Manihot esculenta HOM05D007273 ORTHO05D009230 2.0e-62 243.4 241 57.3
Actinidia39224 Actinidia chinensis HOM05D007273 ORTHO05D009230 2.0e-59 233.4 236 58.1
Carub.0004s2403 Capsella rubella HOM05D007273 ORTHO05D009230 5.9e-59 231.9 244 54.5
Rhsim03G0024900 Rhododendron simsii HOM05D007273 ORTHO05D009230 6.6e-58 228.4 262 54.6
Dinv12487 Davidia involucrata HOM05D007273 ORTHO05D009230 1.5e-57 227.3 254 53.9
TAR369G0984 Trochodendron aralioides HOM05D007273 ORTHO05D009230 1.5e-57 227.3 259 51.4
Lsat_1_v5_gn_9_29100 Lactuca sativa HOM05D007273 ORTHO05D009230 3.3e-57 226.1 240 53.8
Nn2g15217 Nelumbo nucifera HOM05D007273 ORTHO05D009230 4.2e-57 225.7 241 56.8
Thhalv10017127m.g Eutrema salsugineum HOM05D007273 ORTHO05D009230 1.8e-55 220.3 248 54.8
A05p02510 Brassica napus HOM05D007273 ORTHO05D009230 2.3e-55 219.9 239 55.2
BraA05t19244Z Brassica rapa HOM05D007273 ORTHO05D009230 2.3e-55 219.9 239 55.2
CARHR136850 Cardamine hirsuta HOM05D007273 ORTHO05D009230 2.3e-55 219.9 258 52.7
C04p02970 Brassica napus HOM05D007273 ORTHO05D009230 3.0e-55 219.5 244 54.1
Aqoxy1G00330 Aquilegia oxysepala HOM05D007273 ORTHO05D009230 5.2e-55 218.8 262 54.2
THA.LOC104802102 Tarenaya hassleriana HOM05D007273 ORTHO05D009230 5.2e-55 218.8 234 56.8
Sp4g24020 Schrenkiella parvula HOM05D007273 ORTHO05D009230 8.9e-55 218.0 251 53.4
EL10Ac3g07092 Beta vulgaris HOM05D007273 ORTHO05D009230 1.2e-54 217.6 267 52.4
BolC4t21937H Brassica oleracea HOM05D003650 ORTHO05D004213 1.5e-54 217.2 252 52.8
BcaNung02834 Brassica carinata HOM05D007273 ORTHO05D009230 2.0e-54 216.9 242 53.3
AT2G41750 Arabidopsis thaliana HOM05D007273 ORTHO05D009230 3.4e-54 216.1 250 53.6
AL4G40060 Arabidopsis lyrata HOM05D007273 ORTHO05D009230 7.5e-54 214.9 254 53.1
PGSC0003DMG401001308 Solanum tuberosum HOM05D007273 ORTHO05D009230 1.3e-53 214.2 235 52.3
vmacro07848 Vaccinium macrocarpon HOM05D007273 ORTHO05D009230 1.3e-53 214.2 268 50.7
Solyc02g087600.3 Solanum lycopersicum HOM05D007273 ORTHO05D009230 2.8e-53 213.0 235 52.3
Aa31LG1G23760 Aethionema arabicum HOM05D007273 ORTHO05D009230 3.7e-53 212.6 260 50.8
ECA247G0394 Erigeron canadensis HOM05D007273 ORTHO05D009230 3.7e-53 212.6 237 51.1
PSO339G1789 Papaver somniferum HOM05D007273 ORTHO05D009230 1.1e-52 211.1 268 48.9
Cc06_g17580 Coffea canephora HOM05D007273 ORTHO05D009230 1.8e-52 210.3 239 51.9
Sopen02g032350 Solanum pennellii HOM05D007273 ORTHO05D009230 1.8e-52 210.3 235 51.9
CAN.G417.4 Capsicum annuum HOM05D007273 ORTHO05D009230 2.4e-52 209.9 232 53.0
Ciclev10033324m.g Citrus clementina HOM05D007273 ORTHO05D009230 5.4e-52 208.8 245 53.5
AUR62024452 Chenopodium quinoa HOM05D007273 ORTHO05D009230 9.2e-52 208.0 252 52.0
HanXRQChr05g0128781 Helianthus annuus HOM05D007273 ORTHO05D009230 1.6e-51 207.2 247 51.0
Oeu017941.1 Olea europaea HOM05D007273 ORTHO05D009230 2.7e-51 206.5 263 49.4
Nitab4.5_0000082g0140 Nicotiana tabacum HOM05D007273 ORTHO05D009230 3.5e-51 206.1 259 48.6
Sc25g0005300 Simmondsia chinensis HOM05D007273 ORTHO05D009230 1.7e-50 203.8 237 50.6
AUR62026041 Chenopodium quinoa HOM05D007273 ORTHO05D009230 2.3e-50 203.4 235 52.8
SGA_v2.0_scaffold69G23119 Striga asiatica HOM05D007273 ORTHO05D009230 8.6e-50 201.4 257 48.6
Rhsim03G0024700 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.1e-49 201.1 299 45.8
DCAR_003245 Daucus carota HOM05D007273 ORTHO05D009230 1.5e-49 200.7 249 49.4
MSTRG.6428 Avicennia marina HOM05D007273 ORTHO05D009230 1.9e-49 200.3 248 49.2
PSO384G4400 Papaver somniferum HOM05D007273 ORTHO05D009230 4.3e-49 199.1 260 47.7
SalBow6G5536 Salvia bowleyana HOM05D007273 ORTHO05D009230 5.6e-49 198.7 250 49.2
Peaxi162Scf00002g02715 Petunia axillaris HOM05D007273 ORTHO05D009230 1.6e-48 197.2 256 48.0
Migut.J01756 Erythranthe guttata HOM05D007273 ORTHO05D009230 6.1e-48 195.3 230 51.7
Nitab4.5_0010316g0010 Nicotiana tabacum HOM05D007273 ORTHO05D009230 1.0e-47 194.5 219 52.1
HPP92_016047 Vanilla planifolia HOM05D007273 ORTHO05D009230 3.5e-43 179.5 254 46.1
FAN02G1642 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.3e-42 176.8 141 63.1
FAN09G1358 Fragaria x ananassa HOM05D007273 ORTHO05D009230 2.1e-40 170.2 174 62.1
MBI17_g14625_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 2.1e-40 170.2 248 47.2
Mapoly0023s0152 Marchantia polymorpha HOM05D007273 ORTHO05D009230 9.8e-38 161.4 292 38.7
SEGI_31103 Sequoiadendron giganteum HOM05D007273 ORTHO05D009230 3.7e-37 159.5 247 42.5
Os12g0142600 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 1.9e-36 157.1 241 43.6
Os11g0145100 Oryza sativa ssp. japonica HOM05D007273 ORTHO05D009230 4.6e-35 152.5 248 41.9
Pp3c17_17160 Physcomitrium patens HOM05D007273 ORTHO05D009230 4.6e-35 152.5 293 37.2
Zm00001eb163370 Zea mays HOM05D007273 ORTHO05D009230 1.2e-32 144.4 241 41.5
ATR0626G250 Amborella trichopoda HOM05D007273 ORTHO05D009230 4.4e-30 136.0 333 32.7
Rhsim03G0024400 Rhododendron simsii HOM05D007273 ORTHO05D009230 3.2e-28 129.8 153 54.9
Rhsim03G0024300 Rhododendron simsii HOM05D007273 ORTHO05D009230 1.2e-27 127.9 153 53.6
MBI17_g36895_MAGBIO Magnolia biondii HOM05D007273 ORTHO05D009230 3.5e-27 126.3 178 49.4
SMO240G0020 Selaginella moellendorffii HOM05D007273 ORTHO05D009230 1.3e-26 124.4 203 43.8
Hma1.2p1_1611F.1_g293550 Hydrangea macrophylla HOM05D007273 ORTHO05D009230 3.3e-25 119.8 166 45.2
Ah.04g151620 Amaranthus hybridus HOM05D007273 ORTHO05D009230 9.5e-25 118.2 223 39.0
unitig_8.g4551 Utricularia gibba HOM05D007273 ORTHO05D009230 1.8e-23 114.0 102 59.8
Glyma.19G139000 Glycine max HOM05D007273 ORTHO05D009230 8.4e-21 105.1 97 64.9
Lju124C41T6 Lonicera japonica HOM05D007273 ORTHO05D009230 7.1e-20 102.1 99 58.6
CSS0001142 Camellia sinensis var. sinensis HOM05D007273 ORTHO05D009230 2.3e-18 97.1 106 50.9
AagrBONN_evm.TU.Sc2ySwM_228.793 Anthoceros agrestis HOM05D007273 ORTHO05D009230 6.6e-18 95.5 188 37.2
Rhsim03G0023900 Rhododendron simsii HOM05D007273 ORTHO05D009230 8.4e-13 78.6 154 39.6
TPR.G3731 Trifolium pratense HOM05D007273 ORTHO05D009230 1.1e-09 68.2 69 59.4
MCO07G627 Micromonas commoda HOM05D007273 ORTHO05D009230 1.5e-09 67.8 214 27.6
Actinidia09327 Actinidia chinensis HOM05D007273 ORTHO05D009230 5.3e-07 59.3 135 37.0


User provided reference genes

Program Settings