Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2771.1 1398 100.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2578.5 1398 92.3
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2558.1 1399 91.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2557.7 1398 90.9
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2552.3 1398 91.2
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2548.5 1398 91.1
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1399 90.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2543.5 1398 91.3
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2541.1 1398 90.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2537.3 1398 91.0
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2534.6 1398 90.3
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1398 90.4
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2534.2 1398 90.6
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2533.4 1398 90.0
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2531.5 1399 90.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2531.1 1398 90.8
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2530.7 1399 90.6
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2530.4 1399 89.8
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2529.6 1397 90.8
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2526.9 1398 90.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2521.1 1398 90.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2520.3 1398 89.9
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2519.2 1398 90.2
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2518.0 1398 89.9
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2516.9 1402 89.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2516.5 1398 89.5
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2515.3 1400 89.9
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1399 89.6
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2514.2 1398 90.0
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2513.4 1399 89.9
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1402 89.7
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1398 89.3
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2512.6 1399 89.6
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2511.9 1399 89.6
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2509.6 1398 89.9
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2508.8 1398 89.6
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2507.2 1398 89.3
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2506.9 1398 89.8
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2505.7 1398 89.6
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2503.0 1398 88.6
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1398 89.9
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2501.5 1399 89.5
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2501.1 1400 89.0
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2498.4 1398 89.6
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2498.0 1400 89.9
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2497.2 1399 89.2
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2496.5 1398 89.3
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2496.1 1398 89.3
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2494.9 1399 89.1
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2493.8 1398 88.8
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2493.8 1399 88.9
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2491.8 1398 89.1
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2491.8 1398 89.1
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2491.1 1399 88.5
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2483.8 1398 88.5
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2483.0 1399 88.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2481.8 1425 87.6
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2481.1 1399 88.2
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2479.5 1398 89.1
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2478.0 1398 88.8
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2475.3 1399 88.4
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2472.2 1398 89.1
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2468.3 1399 88.0
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2465.3 1399 87.8
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2457.9 1400 86.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2456.0 1400 86.9
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2454.9 1400 86.8
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2450.2 1401 87.0
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2445.6 1398 86.4
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2442.5 1398 86.7
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2442.2 1398 86.7
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2441.0 1399 86.8
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2438.3 1399 86.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2437.9 1349 89.5
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2433.3 1399 86.1
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2432.1 1399 86.8
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2430.2 1461 82.8
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2426.4 1354 88.0
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2424.4 1399 86.1
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2424.0 1399 85.9
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2418.7 1399 85.8
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2416.3 1398 85.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1399 86.1
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2411.3 1401 85.4
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1401 85.7
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2403.6 1399 85.3
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1399 85.3
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1399 85.3
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1403 85.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2401.3 1403 85.2
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2388.6 1398 85.2
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2354.7 1401 84.2
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2354.3 1275 93.2
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2352.4 1398 84.5
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2348.9 1399 84.6
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2342.8 1399 84.1
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2332.4 1409 84.0
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2325.8 1415 81.3
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2298.1 1344 83.6
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2274.2 1274 89.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2229.5 1278 87.5
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2211.4 1354 82.9
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2177.9 1357 78.0
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2173.7 1348 79.1
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2169.0 1348 78.6
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2147.9 1345 77.9
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2147.9 1345 77.9
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2140.5 1346 77.2
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1998.0 1138 87.9
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1981.1 1397 74.6
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1974.1 1126 87.7
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1934.1 1402 74.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1887.1 1345 68.8
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1863.6 1349 68.3
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1721.1 1398 66.4
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1687.2 912 91.3
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1641.3 897 90.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1529.6 808 93.8
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1512.7 808 92.6
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1152.5 690 83.8
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1128.2 690 82.6
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 6.7e-311 1071.2 684 81.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 3.2e-297 1025.8 586 85.7
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 1.3e-261 907.5 1214 43.8
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 1.5e-259 900.6 607 76.8
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.0e-239 834.7 471 89.0
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 7.4e-238 828.6 471 88.3
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 3.2e-233 813.1 472 86.0
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.8e-220 770.8 474 81.9
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 1.0e-202 711.8 413 85.2
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.8e-175 621.3 1404 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 2.3e-162 577.8 1533 30.1
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.6e-110 404.8 1291 27.9
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.3e-88 332.8 174 93.1
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 2.3e-66 258.8 160 80.6
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.1e-58 233.4 122 91.0
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 4.6e-46 191.4 107 89.7
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 4.9e-40 171.4 179 55.9
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 2.4e-31 142.5 139 51.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.1e-27 129.4 99 68.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 1.2e-25 123.6 91 69.2
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 8.1e-19 100.9 58 84.5


User provided reference genes

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