Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000287 Quercus lobata HOM05D003654 ORTHO05D004176 1.5e-42 175.6 81 100.0
Rhsim07G0057900 Rhododendron simsii HOM05D003654 ORTHO05D004176 2.3e-14 82.0 90 51.1
Haze_19862 Corylus avellana HOM05D003654 ORTHO05D004176 5.0e-14 80.9 82 54.9
Atru.chr1.1086 Acer truncatum HOM05D003654 ORTHO05D004176 6.6e-14 80.5 92 46.7
ClCG10G017020 Citrullus lanatus HOM05D003654 ORTHO05D004176 6.6e-14 80.5 78 51.3
Ciclev10033218m.g Citrus clementina HOM05D003654 ORTHO05D004176 6.6e-14 80.5 84 47.6
CiPaw.09G037900 Carya illinoinensis HOM05D003654 ORTHO05D004176 8.6e-14 80.1 84 51.2
Hma1.2p1_2266F.1_g318440 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 8.6e-14 80.1 90 46.7
Nitab4.5_0006340g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-13 79.7 89 47.2
Atru.chr1.1087 Acer truncatum HOM05D003654 ORTHO05D004176 1.9e-13 79.0 82 50.0
Sc10g0000210 Simmondsia chinensis HOM05D003654 ORTHO05D004176 1.9e-13 79.0 82 50.0
Hma1.2p1_2266F.1_g318450 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 2.5e-13 78.6 84 46.4
Thecc.05G154000 Theobroma cacao HOM05D003654 ORTHO05D004176 4.3e-13 77.8 92 47.8
Manes.10G139300 Manihot esculenta HOM05D003654 ORTHO05D004176 9.5e-13 76.6 43 76.7
Atru.chr1.1088 Acer truncatum HOM05D003654 ORTHO05D004176 2.8e-12 75.1 66 59.1
PGSC0003DMG400006790 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.6e-12 74.7 90 47.8
MELO3C009681.2 Cucumis melo HOM05D003654 ORTHO05D004176 6.2e-12 73.9 46 71.7
SEGI_17870 Sequoiadendron giganteum HOM05D003654 ORTHO05D004176 8.1e-12 73.6 74 48.6
Hma1.2p1_2266F.1_g318430 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.1e-11 73.2 97 39.2
Aqoxy7G00792 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 1.8e-11 72.4 80 48.8
Nn2g15259 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.8e-11 72.4 93 44.1
Cc06_g17070 Coffea canephora HOM05D003654 ORTHO05D004176 2.3e-11 72.0 43 69.8
Sopen01g034540 Solanum pennellii HOM05D003654 ORTHO05D004176 2.3e-11 72.0 90 47.8
TAR633G1637 Trochodendron aralioides HOM05D003654 ORTHO05D004176 3.1e-11 71.6 86 45.3
Ah.10g038700 Amaranthus hybridus HOM05D003654 ORTHO05D004176 4.0e-11 71.2 62 53.2
CsaV3_3G039380 Cucumis sativus L. HOM05D003654 ORTHO05D004176 4.0e-11 71.2 89 47.2
Migut.B01278 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.0e-11 71.2 81 45.7
Potri.001G263404 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.8e-11 70.5 80 43.8
Zm00001eb301890 Zea mays HOM05D003654 ORTHO05D004176 6.8e-11 70.5 34 88.2
THA.LOC109117091 Tarenaya hassleriana HOM05D003654 ORTHO05D004176 1.2e-10 69.7 99 40.4
HPP92_012497 Vanilla planifolia HOM05D003654 ORTHO05D004176 1.2e-10 69.7 67 52.2
ClCG09G003960 Citrullus lanatus HOM05D003654 ORTHO05D004176 1.5e-10 69.3 45 66.7
DCAR_020491 Daucus carota HOM05D003654 ORTHO05D004176 1.5e-10 69.3 77 45.5
Hma1.2p1_0226F.1_g095570 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.5e-10 69.3 43 65.1
Solyc01g087570.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 1.5e-10 69.3 90 46.7
Ciclev10006321m.g Citrus clementina HOM05D003654 ORTHO05D004176 2.0e-10 68.9 41 75.6
Sed0004161 Sechium edule HOM05D003654 ORTHO05D004176 2.0e-10 68.9 49 63.3
Actinidia19408 Actinidia chinensis HOM05D003654 ORTHO05D004176 3.4e-10 68.2 43 74.4
Eucgr.H02820 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.4e-10 68.2 82 43.9
Gorai.004G171000 Gossypium raimondii HOM05D003654 ORTHO05D004176 3.4e-10 68.2 80 42.5
Nn7g36270 Nelumbo nucifera HOM05D003654 ORTHO05D004176 3.4e-10 68.2 90 46.7
Peaxi162Scf00071g01140 Petunia axillaris HOM05D003654 ORTHO05D004176 3.4e-10 68.2 49 63.3
AUR62023084 Chenopodium quinoa HOM05D003654 ORTHO05D004176 4.4e-10 67.8 42 71.4
Sed0002974 Sechium edule HOM05D003654 ORTHO05D004176 4.4e-10 67.8 89 40.4
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.8e-10 67.4 68 47.1
Gohir.D08G164000 Gossypium hirsutum HOM05D003654 ORTHO05D004176 5.8e-10 67.4 80 42.5
Os10g0417300 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 5.8e-10 67.4 32 87.5
CANSAT80G0428 Cannabis sativa HOM05D003654 ORTHO05D004176 7.5e-10 67.0 46 67.4
Gohir.A09G122400 Gossypium hirsutum HOM05D003654 ORTHO05D004176 7.5e-10 67.0 81 46.9
CARHR167650 Cardamine hirsuta HOM05D003654 ORTHO05D004176 9.9e-10 66.6 43 67.4
Lsat_1_v5_gn_9_28921 Lactuca sativa HOM05D003654 ORTHO05D004176 9.9e-10 66.6 40 67.5
Lsat_1_v5_gn_9_28941 Lactuca sativa HOM05D003654 ORTHO05D004176 9.9e-10 66.6 40 67.5
Carub.0005s2429 Capsella rubella HOM05D003654 ORTHO05D004176 1.7e-09 65.9 73 49.3
Thhalv10006420m.g Eutrema salsugineum HOM05D003654 ORTHO05D004176 1.7e-09 65.9 43 67.4
HanXRQChr03g0062221 Helianthus annuus HOM05D003654 ORTHO05D004176 1.7e-09 65.9 34 76.5
Lsat_1_v5_gn_9_28881 Lactuca sativa HOM05D003654 ORTHO05D004176 1.7e-09 65.9 34 73.5
BcaC02g09939 Brassica carinata HOM05D003654 ORTHO05D004176 2.2e-09 65.5 50 60.0
C04p34970 Brassica napus HOM05D003654 ORTHO05D004176 2.2e-09 65.5 50 60.0
BolC4t25052H Brassica oleracea HOM05D003654 ORTHO05D004176 2.2e-09 65.5 50 60.0
CsaV3_7G030860 Cucumis sativus L. HOM05D003654 ORTHO05D004176 2.2e-09 65.5 45 62.2
Lsat_1_v5_gn_9_28901 Lactuca sativa HOM05D003654 ORTHO05D004176 2.2e-09 65.5 40 65.0
Aqoxy7G00793 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.9e-09 65.1 39 71.8
CiPaw.13G007300 Carya illinoinensis HOM05D003654 ORTHO05D004176 2.9e-09 65.1 32 87.5
CDE11G0735 Ceratophyllum demersum HOM05D003654 ORTHO05D004176 2.9e-09 65.1 34 79.4
HanXRQChr03g0062211 Helianthus annuus HOM05D003654 ORTHO05D004176 2.9e-09 65.1 37 70.3
Gohir.D09G118500 Gossypium hirsutum HOM05D003654 ORTHO05D004176 3.7e-09 64.7 81 45.7
Hma1.2p1_0589F.1_g184810 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.7e-09 64.7 43 60.5
Lj9P638T60 Lonicera japonica HOM05D003654 ORTHO05D004176 3.7e-09 64.7 33 78.8
Zm00001eb215460 Zea mays HOM05D003654 ORTHO05D004176 3.7e-09 64.7 70 47.1
DCAR_022378 Daucus carota HOM05D003654 ORTHO05D004176 4.9e-09 64.3 42 66.7
Gohir.D09G118550 Gossypium hirsutum HOM05D003654 ORTHO05D004176 4.9e-09 64.3 93 43.0
Nn1g04367 Nelumbo nucifera HOM05D003654 ORTHO05D004176 4.9e-09 64.3 93 39.8
Solyc01g087580.3 Solanum lycopersicum HOM05D003654 ORTHO05D004176 4.9e-09 64.3 45 64.4
Sopen01g034550 Solanum pennellii HOM05D003654 ORTHO05D004176 4.9e-09 64.3 45 64.4
PGSC0003DMG400027273 Solanum tuberosum HOM05D003654 ORTHO05D004176 4.9e-09 64.3 34 73.5
EL10Ac2g04348 Beta vulgaris HOM05D003654 ORTHO05D004176 6.4e-09 63.9 32 84.4
Solyc04g015700.1 Solanum lycopersicum HOM05D003654 ORTHO05D004176 6.4e-09 63.9 34 73.5
Sopen04g007780 Solanum pennellii HOM05D003654 ORTHO05D004176 6.4e-09 63.9 34 73.5
BcaC07g40377 Brassica carinata HOM05D003654 ORTHO05D004176 8.3e-09 63.5 90 41.1
Gohir.D11G328950 Gossypium hirsutum HOM05D003654 ORTHO05D004176 8.3e-09 63.5 43 60.5
Gorai.007G360300 Gossypium raimondii HOM05D003654 ORTHO05D004176 8.3e-09 63.5 43 60.5
Os03g0734500 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 8.3e-09 63.5 32 84.4
Sabra16G0161800 Salix brachista HOM05D003654 ORTHO05D004176 8.3e-09 63.5 33 75.8
BcaC07g40378 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-08 63.2 37 73.0
BcaC07g40382 Brassica carinata HOM05D003654 ORTHO05D004176 1.1e-08 63.2 37 73.0
C08p32930 Brassica napus HOM05D003654 ORTHO05D004176 1.1e-08 63.2 37 73.0
BolC8t50897H Brassica oleracea HOM05D003654 ORTHO05D004176 1.1e-08 63.2 37 73.0
BraA09t40486Z Brassica rapa HOM05D003654 ORTHO05D004176 1.1e-08 63.2 37 73.0
Gorai.006G136800 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.1e-08 63.2 81 44.4
Nn5g30179 Nelumbo nucifera HOM05D003654 ORTHO05D004176 1.1e-08 63.2 44 65.9
Nitab4.5_0006340g0020 Nicotiana tabacum HOM05D003654 ORTHO05D004176 1.1e-08 63.2 48 58.3
Sabra16G0058500 Salix brachista HOM05D003654 ORTHO05D004176 1.1e-08 63.2 85 42.4
Gohir.A11G312450 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.4e-08 62.8 43 58.1
Gorai.006G136900 Gossypium raimondii HOM05D003654 ORTHO05D004176 1.4e-08 62.8 93 41.9
Peaxi162Scf00493g00002 Petunia axillaris HOM05D003654 ORTHO05D004176 1.4e-08 62.8 34 76.5
Glyma.05G150100 Glycine max HOM05D003654 ORTHO05D004176 1.9e-08 62.4 53 54.7
Prupe.8G033700 Prunus persica HOM05D003654 ORTHO05D004176 1.9e-08 62.4 85 43.5
QL04p008848 Quercus lobata HOM05D003654 ORTHO05D004176 1.9e-08 62.4 84 42.9
PGSC0003DMG400006789 Solanum tuberosum HOM05D003654 ORTHO05D004176 1.9e-08 62.4 47 59.6
Atru.chr11.2594 Acer truncatum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 38 68.4
BraA07t30006Z Brassica rapa HOM05D003654 ORTHO05D004176 2.4e-08 62.0 32 81.2
Nitab4.5_0000707g0220 Nicotiana tabacum HOM05D003654 ORTHO05D004176 2.4e-08 62.0 48 56.2
Sp5g05150 Schrenkiella parvula HOM05D003654 ORTHO05D004176 2.4e-08 62.0 32 78.1
ATR0626G251 Amborella trichopoda HOM05D003654 ORTHO05D004176 3.2e-08 61.6 79 40.5
Hma1.2p1_0493F.1_g164900 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-08 61.6 43 55.8
Hma1.2p1_0493F.1_g164905 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.2e-08 61.6 43 55.8
PGSC0003DMG400006788 Solanum tuberosum HOM05D003654 ORTHO05D004176 3.2e-08 61.6 43 60.5
MBI17_g05505_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 36 69.4
MBI17_g18370_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 36 69.4
MBI17_g39959_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 36 69.4
MBI17_g45827_MAGBIO Magnolia biondii HOM05D003654 ORTHO05D004176 4.1e-08 61.2 36 69.4
ATR0626G210 Amborella trichopoda HOM05D003654 ORTHO05D004176 5.4e-08 60.8 57 50.9
Eucgr.A02353 Eucalyptus grandis HOM05D003654 ORTHO05D004176 5.4e-08 60.8 31 80.6
Oeu014591.1 Olea europaea HOM05D003654 ORTHO05D004176 5.4e-08 60.8 82 45.1
Potri.016G055901 Populus trichocarpa HOM05D003654 ORTHO05D004176 5.4e-08 60.8 32 81.2
Solyc02g071460.2 Solanum lycopersicum HOM05D003654 ORTHO05D004176 5.4e-08 60.8 88 42.0
AUR62009401 Chenopodium quinoa HOM05D003654 ORTHO05D004176 7.1e-08 60.5 49 59.2
Nn1g05869 Nelumbo nucifera HOM05D003654 ORTHO05D004176 7.1e-08 60.5 83 45.8
Glyma.08G106900 Glycine max HOM05D003654 ORTHO05D004176 9.2e-08 60.1 34 73.5
Manes.08G050800 Manihot esculenta HOM05D003654 ORTHO05D004176 9.2e-08 60.1 30 86.7
Nn2g15256 Nelumbo nucifera HOM05D003654 ORTHO05D004176 9.2e-08 60.1 52 48.1
Eucgr.G03361 Eucalyptus grandis HOM05D003654 ORTHO05D004176 1.2e-07 59.7 30 86.7
Gohir.A08G143100 Gossypium hirsutum HOM05D003654 ORTHO05D004176 1.2e-07 59.7 32 75.0
Phvul.003G066700 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 1.2e-07 59.7 43 62.8
Os07g0185900 Oryza sativa ssp. japonica HOM05D003654 ORTHO05D004176 1.6e-07 59.3 29 89.7
Sed0005344 Sechium edule HOM05D003654 ORTHO05D004176 1.6e-07 59.3 38 63.2
Aqoxy7G00798 Aquilegia oxysepala HOM05D003654 ORTHO05D004176 2.1e-07 58.9 37 67.6
AL5G39020 Arabidopsis lyrata HOM05D003654 ORTHO05D004176 2.7e-07 58.5 31 77.4
Prupe.7G061500 Prunus persica HOM05D003654 ORTHO05D004176 2.7e-07 58.5 31 80.6
MELO3C023573.2 Cucumis melo HOM05D003654 ORTHO05D004176 3.5e-07 58.2 32 75.0
Eucgr.A02351 Eucalyptus grandis HOM05D003654 ORTHO05D004176 3.5e-07 58.2 83 44.6
Nitab4.5_0000733g0010 Nicotiana tabacum HOM05D003654 ORTHO05D004176 3.5e-07 58.2 36 63.9
Ca_08602_v3 Cicer arietinum L. HOM05D003654 ORTHO05D004176 4.6e-07 57.8 42 57.1
Migut.N01784 Erythranthe guttata HOM05D003654 ORTHO05D004176 4.6e-07 57.8 80 40.0
COL.COLO4_28276 Corchorus olitorius HOM05D003654 ORTHO05D004176 7.8e-07 57.0 30 80.0
SalBow6G0563 Salvia bowleyana HOM05D003654 ORTHO05D004176 7.8e-07 57.0 29 82.8
SGA_v2.0_scaffold119G32750 Striga asiatica HOM05D003654 ORTHO05D004176 7.8e-07 57.0 33 69.7
AT3G57450 Arabidopsis thaliana HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 76.7
BcaB02g07603 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 80.0
BcaC08g44845 Brassica carinata HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 80.0
BolC6t37599H Brassica oleracea HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 80.0
Cfa010801 Carpinus fangiana HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 83.3
Manes.07G007900 Manihot esculenta HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 76.7
SalBow5G4200 Salvia bowleyana HOM05D003654 ORTHO05D004176 1.0e-06 56.6 34 67.6
Sed0011402 Sechium edule HOM05D003654 ORTHO05D004176 1.0e-06 56.6 30 80.0
RcHm_v2.0_Chr3g0482181 Rosa chinensis HOM05D003654 ORTHO05D004176 1.3e-06 56.2 30 80.0
A04p03110 Brassica napus HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 76.7
BraA04t16034Z Brassica rapa HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 76.7
Ciclev10006585m.g Citrus clementina HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 76.7
Hma1.2p1_2135F.1_g314830 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 1.7e-06 55.8 36 61.1
Thecc.01G407700 Theobroma cacao HOM05D003654 ORTHO05D004176 1.7e-06 55.8 30 76.7
Cpa.g.c30295 Carica papaya HOM05D003654 ORTHO05D004176 2.3e-06 55.5 30 76.7
Haze_03159 Corylus avellana HOM05D003654 ORTHO05D004176 2.3e-06 55.5 30 80.0
FAN02G2075 Fragaria x ananassa HOM05D003654 ORTHO05D004176 3.0e-06 55.1 30 76.7
Phvul.003G048800 Phaseolus vulgaris HOM05D003654 ORTHO05D004176 3.0e-06 55.1 57 50.9
RcHm_v2.0_Chr3g0482161 Rosa chinensis HOM05D003654 ORTHO05D004176 3.0e-06 55.1 30 76.7
Sabra06G0035500 Salix brachista HOM05D000131 ORTHO05D004176 3.0e-06 55.1 83 41.0
BcaB02g08316 Brassica carinata HOM05D003654 ORTHO05D004176 3.9e-06 54.7 30 73.3
ECA248G2069 Erigeron canadensis HOM05D003654 ORTHO05D004176 3.9e-06 54.7 39 61.5
Hma1.2p1_0629F.1_g192090 Hydrangea macrophylla HOM05D003654 ORTHO05D004176 3.9e-06 54.7 36 61.1
DCAR_003222 Daucus carota HOM05D003654 ORTHO05D004176 5.1e-06 54.3 31 74.2
ECA234G3018 Erigeron canadensis HOM05D007122 ORTHO05D008918 5.1e-06 54.3 43 60.5
Lsat_1_v5_gn_4_31200 Lactuca sativa HOM05D003654 ORTHO05D004176 6.6e-06 53.9 42 61.9
Potri.009G058500 Populus trichocarpa HOM05D003654 ORTHO05D004176 6.6e-06 53.9 78 35.9
Nitab4.5_0000808g0050 Nicotiana tabacum HOM05D003654 ORTHO05D004176 8.6e-06 53.5 84 35.7
VMungo0251G2538 Vigna mungo HOM05D003654 ORTHO05D004176 8.6e-06 53.5 34 64.7


User provided reference genes

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