Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 2.9e-247 858.2 472 100.0
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 7.2e-246 853.6 472 99.4
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 2.1e-216 755.7 454 91.4
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.8e-212 742.7 468 88.0
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.0e-183 647.1 393 80.7
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 7.4e-182 641.0 414 78.0
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.8e-180 636.3 428 75.2
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 1.4e-167 593.6 400 73.0
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 1.1e-166 590.5 399 74.2
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 7.7e-163 577.8 412 69.7
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 1.4e-161 573.5 400 71.2
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 2.5e-161 572.8 412 70.6
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 4.2e-161 572.0 412 69.9
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 4.2e-161 572.0 390 71.8
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.4e-161 570.9 412 69.9
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 9.4e-161 570.9 412 69.7
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 3.0e-159 565.8 399 70.2
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 8.8e-159 564.3 416 69.7
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 8.8e-159 564.3 413 67.6
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 2.0e-158 563.1 399 70.9
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.3e-157 560.5 399 71.2
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.3e-157 560.5 398 71.9
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.7e-157 560.1 414 67.9
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 3.7e-157 558.9 401 71.1
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 8.2e-157 557.8 416 67.3
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.5e-155 553.5 419 66.6
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 1.5e-155 553.5 399 69.9
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.0e-154 550.8 396 71.0
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 1.7e-154 550.1 399 68.2
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.9e-154 549.3 398 68.8
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 2.5e-153 546.2 401 67.8
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.5e-153 546.2 408 67.2
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 2.7e-152 542.7 400 68.0
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 2.7e-152 542.7 416 64.9
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 2.7e-152 542.7 398 67.6
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 1.4e-151 540.4 454 61.5
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 3.9e-151 538.9 403 67.2
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.4e-150 535.4 359 72.4
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 7.4e-150 534.6 400 66.2
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 7.4e-150 534.6 397 67.5
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 2.2e-149 533.1 413 64.2
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 3.7e-149 532.3 400 66.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 3.7e-149 532.3 384 67.7
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-148 530.8 361 70.1
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-148 530.4 402 66.9
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.8e-148 530.0 401 67.3
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 1.8e-148 530.0 400 66.5
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 4.1e-148 528.9 389 66.8
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 5.3e-148 528.5 396 67.4
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.2e-147 527.3 400 66.8
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.2e-147 527.3 400 66.8
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 1.6e-147 526.9 402 65.9
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 2.0e-147 526.6 376 71.5
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 2.0e-147 526.6 414 64.3
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 1.3e-146 523.9 400 66.2
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 3.8e-146 522.3 400 65.5
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 6.5e-146 521.5 358 69.3
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 8.5e-146 521.2 361 69.0
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 1.1e-145 520.8 419 62.5
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 3.2e-145 519.2 361 68.7
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 4.2e-145 518.8 414 68.4
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 5.5e-145 518.5 400 66.0
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 1.2e-144 517.3 399 65.9
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 1.6e-144 516.9 380 74.2
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 6.1e-144 515.0 355 70.4
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 1.4e-143 513.8 399 65.2
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.8e-143 513.5 361 68.1
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 1.2e-142 510.8 400 64.0
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 4.4e-142 508.8 400 63.8
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 7.5e-142 508.1 340 71.2
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 1.7e-141 506.9 409 63.1
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 1.7e-141 506.9 340 70.9
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 6.3e-141 505.0 360 67.5
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 8.2e-141 504.6 360 67.8
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 2.4e-140 503.1 399 65.2
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.1e-140 502.3 399 63.7
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 7.0e-140 501.5 435 60.2
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 4.5e-139 498.8 400 63.5
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 5.9e-139 498.4 349 69.9
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 5.9e-139 498.4 339 69.9
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 5.9e-139 498.4 393 63.4
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 2.2e-138 496.5 372 67.7
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 5.0e-138 495.4 372 67.7
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 5.0e-138 495.4 355 67.6
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 1.1e-137 494.2 321 74.1
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.2e-136 490.7 425 60.2
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.2e-136 490.7 425 60.2
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 1.0e-135 487.6 383 62.1
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 2.3e-135 486.5 397 62.2
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 3.0e-135 486.1 401 64.3
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 2.0e-134 483.4 399 60.4
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 5.7e-134 481.9 367 63.5
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 7.0e-132 474.9 414 58.0
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 3.5e-131 472.6 386 60.1
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 5.0e-130 468.8 414 57.0
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 5.0e-130 468.8 408 57.8
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 8.6e-130 468.0 414 57.2
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 1.5e-129 467.2 399 57.9
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 3.3e-129 466.1 419 57.5
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 1.2e-128 464.2 360 61.7
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.6e-128 463.8 399 60.4
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 2.1e-128 463.4 384 59.4
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 8.0e-128 461.5 358 61.7
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 1.0e-127 461.1 385 59.5
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 1.0e-127 461.1 360 61.7
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 9.8e-126 454.5 360 60.3
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 9.8e-126 454.5 360 60.3
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 2.8e-125 453.0 364 59.6
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 8.3e-125 451.4 360 64.2
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 3.1e-124 449.5 425 57.4
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 5.4e-124 448.7 415 55.4
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 2.0e-123 446.8 362 60.5
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 2.0e-123 446.8 413 55.0
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.0e-122 444.5 364 59.1
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 2.3e-119 433.3 367 58.0
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.4e-117 425.2 409 55.3
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 1.4e-116 424.1 291 70.8
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 2.4e-116 423.3 410 52.2
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.1e-116 422.5 432 53.7
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.7e-114 417.2 359 56.5
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.5e-113 413.3 365 58.1
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.2e-112 411.0 294 69.4
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 6.8e-111 405.2 291 66.0
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 4.0e-103 379.4 322 58.1
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 5.4e-100 369.0 295 62.4
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 4.6e-99 365.9 411 51.1
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.0e-94 350.5 293 57.7
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 1.9e-89 334.0 405 46.7
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 1.8e-87 327.4 396 45.2
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 3.1e-87 326.6 432 44.9
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 6.9e-87 325.5 291 57.0
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.1e-81 308.1 398 47.5
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.5e-81 307.8 298 52.7
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 3.4e-78 296.6 344 48.3
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 6.7e-74 282.3 206 66.0
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.3e-66 257.3 398 42.5
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 9.3e-60 235.3 302 44.4
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-59 235.0 229 54.6
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 4.8e-56 223.0 164 69.5
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 1.4e-55 221.5 360 40.3
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 1.4e-55 221.5 360 40.3
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 7.9e-51 205.7 135 71.1
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.1e-47 195.3 408 35.0
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.9e-46 189.5 232 45.3
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 8.2e-40 169.1 371 34.0
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.2e-38 165.2 276 38.4
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 1.8e-26 124.8 385 25.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 2.8e-24 117.5 207 33.8
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.4e-23 115.2 105 56.2
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.7e-21 108.2 124 46.8
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 2.1e-19 101.3 275 28.0
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 3.4e-17 94.0 86 55.8
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 3.4e-17 94.0 86 55.8
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 7.5e-17 92.8 66 71.2
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.7e-16 91.7 53 77.4
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 2.3e-10 71.2 75 53.3
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 2.0e-09 68.2 41 75.6


User provided reference genes

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