Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 2.6e-207 725.3 413 100.0
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 8.8e-139 497.7 397 79.3
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.0e-131 472.2 394 71.6
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 1.0e-115 421.0 394 66.5
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.6e-108 397.1 394 64.7
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 4.7e-108 395.6 394 64.5
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.1e-107 394.4 394 65.5
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.8e-107 393.7 394 64.2
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 6.8e-107 391.7 396 64.6
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 3.4e-106 389.4 344 74.1
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 1.1e-104 384.4 389 62.2
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.4e-104 384.0 394 64.0
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 8.6e-102 374.8 394 63.7
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 4.3e-101 372.5 397 61.5
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 1.1e-99 367.9 394 59.1
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 4.0e-99 365.9 403 60.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 5.2e-99 365.5 394 61.7
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 4.4e-98 362.5 399 59.9
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 2.4e-96 356.7 395 61.8
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 7.1e-96 355.1 395 62.0
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 1.2e-95 354.4 365 61.4
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.2e-95 354.4 396 57.3
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 4.6e-95 352.4 400 60.5
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 6.0e-95 352.1 397 61.5
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 7.8e-95 351.7 394 56.3
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 7.8e-95 351.7 394 56.3
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-94 350.9 396 57.1
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 2.5e-93 346.7 397 53.1
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 5.6e-93 345.5 396 59.8
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 2.4e-91 340.1 398 55.3
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-90 337.0 398 55.8
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 7.6e-90 335.1 389 55.0
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 4.9e-89 332.4 405 52.8
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 4.9e-89 332.4 396 58.1
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 1.9e-88 330.5 393 56.5
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 1.9e-88 330.5 396 57.6
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-88 329.3 399 52.9
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 4.2e-88 329.3 399 52.9
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 9.3e-88 328.2 395 55.9
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.7e-87 326.6 389 55.5
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 3.9e-86 322.8 409 56.0
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.3e-84 317.8 396 55.3
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 3.6e-84 316.2 399 54.9
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 6.2e-84 315.5 365 52.3
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.4e-83 314.3 392 55.6
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 6.9e-83 312.0 396 55.1
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 1.5e-82 310.8 393 52.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 7.6e-82 308.5 394 53.0
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.7e-81 307.4 395 53.9
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 2.2e-81 307.0 392 54.1
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.2e-81 307.0 393 50.6
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 2.9e-81 306.6 397 52.4
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 1.9e-80 303.9 397 54.2
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 5.4e-80 302.4 399 52.9
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 9.3e-80 301.6 397 53.4
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-78 297.4 398 49.0
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-78 297.0 402 53.2
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 5.1e-78 295.8 393 54.7
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 8.7e-78 295.0 397 48.9
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 2.5e-77 293.5 368 55.4
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 6.2e-76 288.9 396 52.3
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 9.0e-75 285.0 390 49.2
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.8e-74 282.3 394 52.3
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 9.9e-74 281.6 355 54.4
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 3.8e-73 279.6 365 54.5
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.8e-73 279.6 355 54.1
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 5.5e-72 275.8 398 52.5
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 1.2e-71 274.6 383 47.3
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 2.1e-71 273.9 410 46.6
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 1.3e-70 271.2 355 53.5
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 2.3e-70 270.4 401 47.4
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 3.9e-70 269.6 398 47.0
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 1.5e-69 267.7 415 46.3
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 5.6e-69 265.8 396 48.0
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 7.4e-69 265.4 413 47.9
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.3e-68 264.6 398 46.0
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 1.3e-68 264.6 412 46.4
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 1.1e-67 261.5 396 49.0
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.0e-65 255.0 405 47.4
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 2.5e-64 250.4 406 44.8
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 2.5e-64 250.4 413 44.3
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.6e-63 247.7 397 46.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 2.1e-63 247.3 412 45.1
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 6.0e-63 245.7 395 48.4
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 7.9e-63 245.4 415 45.1
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 1.3e-62 244.6 329 56.5
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 6.7e-62 242.3 406 51.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 1.3e-60 238.0 392 43.4
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.8e-60 236.9 413 44.1
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 2.0e-58 230.7 263 49.8
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 8.5e-57 225.3 401 45.4
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-56 224.6 394 41.6
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 1.4e-56 224.6 394 41.6
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 3.2e-56 223.4 397 39.5
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.6e-55 219.5 396 44.4
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.8e-54 217.6 397 42.3
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 1.8e-54 217.6 397 42.3
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 3.3e-53 213.4 329 48.9
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 4.8e-52 209.5 394 43.7
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 8.2e-52 208.8 403 42.9
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 9.1e-51 205.3 352 46.6
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 2.1e-47 194.1 398 41.0
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.4e-46 191.4 398 42.0
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.8e-46 191.0 394 39.1
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.7e-46 189.1 173 71.7
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 3.1e-43 180.3 331 39.0
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 4.1e-43 179.9 399 40.4
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 5.9e-42 176.0 393 37.2
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.0e-41 175.3 399 44.1
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 1.0e-41 175.3 331 38.7
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 2.2e-41 174.1 395 41.5
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 6.5e-41 172.6 395 41.5
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 6.5e-41 172.6 331 43.2
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 6.5e-41 172.6 409 39.4
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 8.5e-41 172.2 396 36.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 2.5e-40 170.6 397 38.3
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.4e-38 164.9 396 37.4
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.3e-36 158.3 232 53.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.7e-36 157.9 399 39.6
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 2.2e-36 157.5 392 32.9
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 3.7e-36 156.8 397 36.5
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 8.2e-36 155.6 365 40.3
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.1e-35 155.2 377 39.5
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 2.6e-34 150.6 329 39.8
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 2.2e-33 147.5 388 38.4
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 6.5e-33 146.0 331 35.3
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 5.5e-32 142.9 206 49.5
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.2e-31 141.7 398 37.9
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 6.1e-31 139.4 342 38.6
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.2e-28 129.0 346 39.0
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 5.3e-27 126.3 398 31.4
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 1.6e-26 124.8 305 40.0
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 3.5e-26 123.6 358 36.6
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 4.5e-26 123.2 389 34.7
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.3e-25 121.7 378 35.4
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.7e-25 121.3 358 35.8
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.9e-25 120.6 243 48.1
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 1.5e-24 118.2 358 37.2
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.9e-24 117.9 327 34.3
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 3.6e-23 113.6 320 34.7
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.6e-23 113.6 320 34.7
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 1.4e-22 111.7 327 38.8
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 6.8e-22 109.4 172 50.0
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 4.8e-20 103.2 313 36.1
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 7.0e-19 99.4 327 37.3
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 7.0e-19 99.4 327 37.3
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 8.0e-15 85.9 320 29.7
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 4.0e-14 83.6 358 31.6
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 8.8e-14 82.4 395 30.6
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 8.8e-14 82.4 318 35.8
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-13 82.0 318 32.4
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 5.7e-13 79.7 322 31.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.4e-11 74.3 123 41.5
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 2.0e-10 71.2 219 37.4
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 4.5e-10 70.1 326 32.5
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 7.8e-10 69.3 326 32.5
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 1.1e-08 65.5 394 29.7
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 7.3e-08 62.8 146 45.2
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 9.5e-08 62.4 391 30.7
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.8e-07 60.8 216 34.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.8e-07 60.8 216 34.3
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 1.8e-06 58.2 391 30.4


User provided reference genes

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