Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p053003 Quercus lobata HOM05D001617 ORTHO05D008611 5.2e-102 374.4 189 100.0
Haze_03607 Corylus avellana HOM05D001617 ORTHO05D008611 6.6e-73 277.7 189 74.1
Prupe.7G183400 Prunus persica HOM05D001617 ORTHO05D008611 1.6e-66 256.5 180 72.8
MD15G1230700 Malus domestica HOM05D001617 ORTHO05D008611 6.0e-66 254.6 185 69.7
FvH4_1g10271 Fragaria vesca HOM05D001617 ORTHO05D008611 1.7e-65 253.1 186 70.4
FAN19G1097 Fragaria x ananassa HOM05D001617 ORTHO05D002495 2.3e-65 252.7 186 69.9
RcHm_v2.0_Chr2g0097101 Rosa chinensis HOM05D001617 ORTHO05D008611 1.9e-64 249.6 185 70.3
MD02G1114800 Malus domestica HOM05D001617 ORTHO05D008611 4.3e-64 248.4 186 68.3
Potri.018G026700 Populus trichocarpa HOM05D001617 ORTHO05D008611 4.0e-62 241.9 179 68.2
Manes.03G014200 Manihot esculenta HOM05D001617 ORTHO05D008611 1.5e-61 240.0 186 66.1
CiPaw.08G181900 Carya illinoinensis HOM05D001617 ORTHO05D008611 3.7e-60 235.3 187 68.4
Ca_24984_v3 Cicer arietinum L. HOM05D001617 ORTHO05D008611 5.4e-59 231.5 184 63.6
FAN23G1150 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.2e-58 230.3 221 57.0
TPR.G24692 Trifolium pratense HOM05D001617 ORTHO05D008611 2.7e-58 229.2 176 65.9
TPR.G27884 Trifolium pratense HOM05D001617 ORTHO05D008611 3.5e-58 228.8 184 62.5
Psat4g142640 Pisum sativum HOM05D001617 ORTHO05D008611 3.9e-57 225.3 184 62.0
Atru.chr3.130 Acer truncatum HOM05D001617 ORTHO05D008611 6.6e-57 224.6 186 61.3
Lalb_Chr05g0214811 Lupinus albus HOM05D001617 ORTHO05D008611 1.5e-56 223.4 184 62.0
Dinv40191 Davidia involucrata HOM05D001617 ORTHO05D008611 7.3e-56 221.1 183 61.7
arahy.Tifrunner.gnm1.ann1.00REGV Arachis hypogaea HOM05D001617 ORTHO05D008611 2.1e-55 219.5 184 59.8
arahy.Tifrunner.gnm1.ann1.P3NXZX Arachis hypogaea HOM05D001617 ORTHO05D008611 2.1e-55 219.5 184 59.8
Sabra06G0199600 Salix brachista HOM05D001617 ORTHO05D008611 2.8e-55 219.2 174 63.2
Glyma.01G158500 Glycine max HOM05D001617 ORTHO05D008611 4.7e-55 218.4 184 60.3
Phvul.002G116800 Phaseolus vulgaris HOM05D001617 ORTHO05D008611 4.7e-55 218.4 176 61.4
Glyma.11G086100 Glycine max HOM05D001617 ORTHO05D008611 8.1e-55 217.6 184 61.4
CSS0049801 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.1e-54 217.2 171 63.2
Medtr7g006210 Medicago truncatula HOM05D001617 ORTHO05D008611 3.1e-54 215.7 167 63.5
Ciclev10026581m.g Citrus clementina HOM05D001617 ORTHO05D008611 4.0e-54 215.3 169 62.1
CSS0040657 Camellia sinensis var. sinensis HOM05D001617 ORTHO05D008611 1.2e-53 213.8 171 63.2
Actinidia22895 Actinidia chinensis HOM05D001617 ORTHO05D008611 3.4e-53 212.2 180 60.0
Actinidia17356 Actinidia chinensis HOM05D001617 ORTHO05D008611 2.9e-52 209.1 170 62.9
Hma1.2p1_0300F.1_g117970 Hydrangea macrophylla HOM05D001617 ORTHO05D008611 6.4e-52 208.0 181 61.9
Lalb_Chr16g0380051 Lupinus albus HOM05D001617 ORTHO05D008611 1.9e-51 206.5 184 58.2
Lj2g0016890 Lotus japonicus HOM05D001617 ORTHO05D008611 2.1e-50 203.0 173 61.3
Duzib147G0359 Durio zibethinus HOM05D001617 ORTHO05D008611 6.0e-50 201.4 183 59.0
Rhsim10G0195300 Rhododendron simsii HOM05D001617 ORTHO05D008611 7.8e-50 201.1 180 60.0
Eucgr.I02221 Eucalyptus grandis HOM05D001617 ORTHO05D008611 3.0e-49 199.1 185 56.2
Sed0024019 Sechium edule HOM05D001617 ORTHO05D008611 6.6e-49 198.0 178 59.6
Nn5g30995 Nelumbo nucifera HOM05D001617 ORTHO05D008611 8.6e-49 197.6 185 57.3
TAR625G0652 Trochodendron aralioides HOM05D001617 ORTHO05D008611 8.6e-49 197.6 185 58.4
Sc07g0001380 Simmondsia chinensis HOM05D001617 ORTHO05D008611 1.9e-48 196.4 174 59.8
AUR62003746 Chenopodium quinoa HOM05D001617 ORTHO05D008611 4.3e-48 195.3 182 57.7
CsaV3_3G000210 Cucumis sativus L. HOM05D001617 ORTHO05D008611 7.3e-48 194.5 178 57.9
Potri.006G255301 Populus trichocarpa HOM05D001617 ORTHO05D008611 2.8e-47 192.6 172 57.6
AUR62002049 Chenopodium quinoa HOM05D001617 ORTHO05D008611 4.0e-46 188.7 182 56.6
Thecc.01G005100 Theobroma cacao HOM05D001617 ORTHO05D008611 1.5e-45 186.8 181 53.6
PSO210G2591 Papaver somniferum HOM05D001617 ORTHO05D008611 2.0e-45 186.4 185 51.4
HanXRQChr03g0061381 Helianthus annuus HOM05D001617 ORTHO05D008611 2.6e-45 186.0 183 53.0
Solyc02g038814.1 Solanum lycopersicum HOM05D001617 ORTHO05D008611 2.2e-44 183.0 162 58.6
Sopen02g012580 Solanum pennellii HOM05D001617 ORTHO05D008611 2.2e-44 183.0 162 58.6
Medtr8g446540 Medicago truncatula HOM05D001617 ORTHO05D008611 2.9e-44 182.6 153 62.1
AL7G15630 Arabidopsis lyrata HOM05D001617 ORTHO05D008611 4.2e-43 178.7 191 49.2
Migut.H02499 Erythranthe guttata HOM05D001617 ORTHO05D008611 7.1e-43 177.9 186 54.3
TWI09G0535 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 1.2e-42 177.2 170 56.5
VMungo1215G1547 Vigna mungo HOM05D004017 ORTHO05D004612 2.1e-42 176.4 121 70.2
Thhalv10026286m.g Eutrema salsugineum HOM05D001617 ORTHO05D008611 2.7e-42 176.0 184 52.2
Gohir.A02G178000 Gossypium hirsutum HOM05D001617 ORTHO05D008611 3.5e-42 175.6 175 54.9
AT4G35530 Arabidopsis thaliana HOM05D001617 ORTHO05D008611 4.6e-42 175.3 191 49.7
Lsat_1_v5_gn_7_41980 Lactuca sativa HOM05D001617 ORTHO05D008611 4.6e-42 175.3 187 49.7
Nitab4.5_0001365g0060 Nicotiana tabacum HOM05D001617 ORTHO05D008611 4.6e-42 175.3 167 56.9
Aqoxy6G01611 Aquilegia oxysepala HOM05D001617 ORTHO05D008611 6.0e-42 174.9 163 55.2
Gorai.003G002100 Gossypium raimondii HOM05D001617 ORTHO05D008611 3.0e-41 172.6 175 54.3
A03p63650 Brassica napus HOM05D001617 ORTHO05D008611 3.9e-41 172.2 178 51.7
BraA03t15436Z Brassica rapa HOM05D001617 ORTHO05D008611 3.9e-41 172.2 178 51.7
Carub.0007s0479 Capsella rubella HOM05D001617 ORTHO05D008611 3.9e-41 172.2 184 51.1
PSO761G0409 Papaver somniferum HOM05D001617 ORTHO05D008611 3.9e-41 172.2 190 46.8
Gohir.D03G001800 Gossypium hirsutum HOM05D001617 ORTHO05D008611 5.1e-41 171.8 175 53.7
C07p61220 Brassica napus HOM05D001617 ORTHO05D008611 6.6e-41 171.4 182 51.1
BolC7t46548H Brassica oleracea HOM05D001617 ORTHO05D008611 6.6e-41 171.4 182 51.1
A01p03080 Brassica napus HOM05D001617 ORTHO05D008611 1.5e-40 170.2 184 50.0
ECA240G2496 Erigeron canadensis HOM05D001617 ORTHO05D008611 1.9e-40 169.9 176 51.1
Peaxi162Scf00580g00110 Petunia axillaris HOM05D001617 ORTHO05D008611 1.9e-40 169.9 179 52.0
Aa31LG6G12490 Aethionema arabicum HOM05D001617 ORTHO05D008611 4.3e-40 168.7 181 50.3
BraA01t00292Z Brassica rapa HOM05D001617 ORTHO05D008611 4.3e-40 168.7 184 49.5
Nitab4.5_0000467g0050 Nicotiana tabacum HOM05D001617 ORTHO05D008611 1.2e-39 167.2 184 51.6
SGA_v2.0_scaffold280G46856 Striga asiatica HOM05D001617 ORTHO05D008611 1.6e-39 166.8 188 52.1
PGR119G0287 Punica granatum HOM05D001617 ORTHO05D008611 2.1e-39 166.4 176 51.1
ATR0807G073 Amborella trichopoda HOM05D001617 ORTHO05D008611 2.8e-39 166.0 176 50.6
Os05g0165400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 4.7e-39 165.2 166 53.0
Zm00001eb123330 Zea mays HOM05D001617 ORTHO05D008611 1.1e-38 164.1 173 51.4
Sp7g33310 Schrenkiella parvula HOM05D001617 ORTHO05D008611 4.0e-38 162.2 194 49.0
ClCG10G000190 Citrullus lanatus HOM05D001617 ORTHO05D008611 5.3e-38 161.8 198 49.0
THA.LOC104819716 Tarenaya hassleriana HOM05D001617 ORTHO05D008611 9.0e-38 161.0 178 48.9
BcaNung03634 Brassica carinata HOM05D001617 ORTHO05D008611 1.2e-37 160.6 176 47.7
Manes.03G014750 Manihot esculenta HOM05D001617 ORTHO05D008611 2.0e-37 159.8 179 53.6
TWI73G0916 Tripterygium wilfordii HOM05D001617 ORTHO05D008611 3.4e-37 159.1 190 49.5
PGSC0003DMG400017488 Solanum tuberosum HOM05D001617 ORTHO05D008611 5.8e-37 158.3 184 51.1
HPP92_001135 Vanilla planifolia HOM05D001617 ORTHO05D008611 5.8e-37 158.3 163 52.1
Cc07_g11900 Coffea canephora HOM05D001617 ORTHO05D008611 1.3e-36 157.1 171 53.2
GSVIVG01013391001 Vitis vinifera HOM05D001617 ORTHO05D008611 1.3e-36 157.1 181 48.6
CANSAT25G0226 Cannabis sativa HOM05D001617 ORTHO05D008611 4.9e-36 155.2 182 50.5
Lj2g0001157 Lotus japonicus HOM05D001617 ORTHO05D008611 5.4e-35 151.8 173 51.4
MELO3C013716.2 Cucumis melo HOM05D001617 ORTHO05D008611 1.6e-34 150.2 88 79.5
EL10Ac6g15051 Beta vulgaris HOM05D001617 ORTHO05D008611 3.0e-33 146.0 223 43.0
COL.COLO4_22553 Corchorus olitorius HOM05D001617 ORTHO05D008611 5.1e-33 145.2 186 45.2
CARHR243860 Cardamine hirsuta HOM05D001617 ORTHO05D008611 1.9e-32 143.3 124 55.6
Hund03599 Selenicereus undatus HOM05D001617 ORTHO05D008611 2.1e-31 139.8 177 48.0
FAN26G0309 Fragaria x ananassa HOM05D001617 ORTHO05D002495 4.8e-31 138.7 87 78.2
BcaNung00584 Brassica carinata HOM05D001617 ORTHO05D008611 1.2e-29 134.0 179 44.1
QL02p015100 Quercus lobata HOM05D001617 ORTHO05D008611 1.2e-29 134.0 164 46.3
SalBow8G0576 Salvia bowleyana HOM05D001617 ORTHO05D008611 3.4e-29 132.5 167 46.7
SEGI_30027 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 1.2e-26 124.0 174 42.5
Haze_22828 Corylus avellana HOM05D006218 ORTHO05D007338 1.6e-26 123.6 87 70.1
SEGI_12529 Sequoiadendron giganteum HOM05D001617 ORTHO05D008611 7.9e-26 121.3 102 55.9
C01p03430 Brassica napus HOM05D001617 ORTHO05D008611 1.0e-25 120.9 202 39.1
BolC1t00330H Brassica oleracea HOM05D001617 ORTHO05D008611 1.0e-25 120.9 202 39.1
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 6.7e-25 118.2 154 44.2
TAR381G0965 Trochodendron aralioides HOM05D001617 ORTHO05D008611 1.9e-24 116.7 80 72.5
QL02p015033 Quercus lobata HOM05D001617 ORTHO05D008611 4.8e-23 112.1 162 42.6
Pp3c25_310 Physcomitrium patens HOM05D001617 ORTHO05D008611 4.0e-22 109.0 142 46.5
unitig_46.g18791 Utricularia gibba HOM05D001617 ORTHO05D008611 4.0e-22 109.0 177 41.8
Mapoly0064s0006 Marchantia polymorpha HOM05D001617 ORTHO05D008611 9.0e-22 107.8 161 41.0
AagrBONN_evm.TU.Sc2ySwM_368.1506 Anthoceros agrestis HOM05D001617 ORTHO05D008611 5.5e-19 98.6 99 46.5
Os01g0166400 Oryza sativa ssp. japonica HOM05D001617 ORTHO05D008611 7.9e-18 94.7 81 54.3
FAN28G0538 Fragaria x ananassa HOM05D001617 ORTHO05D002495 1.0e-17 94.4 88 59.1
Medtr7g005770 Medicago truncatula HOM05D001617 ORTHO05D008611 1.6e-15 87.0 71 62.0
arahy.Tifrunner.gnm1.ann1.JF0LYH Arachis hypogaea HOM05D001617 ORTHO05D008611 6.9e-14 81.6 91 53.8
SHI18558 Sapria himalayana HOM05D000291 ORTHO05D001358 1.3e-12 77.4 193 32.1
Zm00001eb345970 Zea mays HOM05D001617 ORTHO05D008611 3.2e-11 72.8 100 41.0
CBR_g38242 Chara braunii HOM05D001617 ORTHO05D008611 5.5e-11 72.0 113 34.5


User provided reference genes

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