Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p052953 Quercus lobata HOM05D006972 ORTHO05D008519 3.4e-118 428.3 214 100.0
Cfa007077 Carpinus fangiana HOM05D006972 ORTHO05D008519 5.1e-90 334.7 213 80.3
CiPaw.08G181600 Carya illinoinensis HOM05D006972 ORTHO05D008519 1.4e-87 326.6 213 79.3
Haze_03655 Corylus avellana HOM05D006972 ORTHO05D008519 2.4e-87 325.9 207 80.7
TAR628G0904 Trochodendron aralioides HOM05D006972 ORTHO05D008519 5.9e-86 321.2 213 74.6
Manes.01G155400 Manihot esculenta HOM05D006972 ORTHO05D008519 1.7e-85 319.7 213 75.1
Prupe.7G182900 Prunus persica HOM05D006972 ORTHO05D008519 8.5e-85 317.4 214 75.7
GSVIVG01026641001 Vitis vinifera HOM05D006972 ORTHO05D008519 2.5e-84 315.8 213 75.1
Atru.chr3.134 Acer truncatum HOM05D006972 ORTHO05D008519 7.2e-84 314.3 213 76.1
RcHm_v2.0_Chr2g0097181 Rosa chinensis HOM05D006972 ORTHO05D008519 1.2e-83 313.5 214 73.8
Rhsim10G0195900 Rhododendron simsii HOM05D006972 ORTHO05D008519 3.6e-83 312.0 212 73.6
TWI73G0968 Tripterygium wilfordii HOM05D006972 ORTHO05D008519 1.4e-82 310.1 212 74.1
Potri.005G101501 Populus trichocarpa HOM05D006972 ORTHO05D008519 5.1e-82 308.1 206 75.2
Oeu012451.1 Olea europaea HOM05D006972 ORTHO05D008519 3.3e-81 305.4 212 71.7
TPR.G33865 Trifolium pratense HOM05D006972 ORTHO05D008519 4.3e-81 305.1 213 73.2
CSS0043244 Camellia sinensis var. sinensis HOM05D006972 ORTHO05D008519 2.2e-80 302.8 213 70.9
vmacro20633 Vaccinium macrocarpon HOM05D006972 ORTHO05D008519 2.2e-80 302.8 212 70.3
Actinidia17360 Actinidia chinensis HOM05D006972 ORTHO05D008519 6.3e-80 301.2 213 71.4
Nitab4.5_0000495g0120 Nicotiana tabacum HOM05D006972 ORTHO05D008519 6.3e-80 301.2 213 70.9
Cpa.g.sc365.5 Carica papaya HOM05D006972 ORTHO05D008519 8.2e-80 300.8 214 71.0
MSTRG.3630 Avicennia marina HOM05D006972 ORTHO05D008519 1.4e-79 300.1 212 71.2
Glyma.01G158800 Glycine max HOM05D006972 ORTHO05D008519 3.1e-79 298.9 213 72.3
Eucgr.I02225 Eucalyptus grandis HOM05D006972 ORTHO05D008519 4.1e-79 298.5 214 71.5
MELO3C013724.2 Cucumis melo HOM05D006972 ORTHO05D008519 6.9e-79 297.7 214 68.7
Nitab4.5_0005297g0020 Nicotiana tabacum HOM05D006972 ORTHO05D008519 9.1e-79 297.4 213 70.9
Nn5g30989 Nelumbo nucifera HOM05D006972 ORTHO05D008519 1.2e-78 297.0 255 62.0
CANSAT25G3183 Cannabis sativa HOM05D006972 ORTHO05D008519 1.5e-78 296.6 212 69.8
ClCG10G000270 Citrullus lanatus HOM05D006972 ORTHO05D008519 1.5e-78 296.6 207 72.5
Ca_24981_v3 Cicer arietinum L. HOM05D006972 ORTHO05D008519 4.5e-78 295.0 213 71.4
Duzib147G0479 Durio zibethinus HOM05D006972 ORTHO05D008519 4.5e-78 295.0 213 69.0
Lalb_Chr16g0380011 Lupinus albus HOM05D006972 ORTHO05D008519 4.5e-78 295.0 213 70.0
Psat2g148200 Pisum sativum HOM05D006972 ORTHO05D008519 4.5e-78 295.0 213 71.4
FAN19G2622 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.2e-77 292.7 211 70.1
Cc07_g11850 Coffea canephora HOM05D006972 ORTHO05D008519 2.9e-77 292.4 212 70.8
Sed0027466 Sechium edule HOM05D006972 ORTHO05D008519 5.0e-77 291.6 214 67.8
Thecc.01G005600 Theobroma cacao HOM05D006972 ORTHO05D008519 1.1e-76 290.4 213 67.6
CsaV3_3G000300 Cucumis sativus L. HOM05D006972 ORTHO05D008519 1.9e-76 289.7 214 67.3
Ciclev10026547m.g Citrus clementina HOM05D006972 ORTHO05D008519 4.2e-76 288.5 212 68.9
Solyc03g032120.3 Solanum lycopersicum HOM05D006972 ORTHO05D008519 4.2e-76 288.5 213 68.5
Migut.L00961 Erythranthe guttata HOM05D006972 ORTHO05D008519 7.2e-76 287.7 213 68.1
SalBow5G0785 Salvia bowleyana HOM05D006972 ORTHO05D008519 1.6e-75 286.6 212 67.0
MBI05_g14344_MAGBIO Magnolia biondii HOM05D006972 ORTHO05D008519 7.9e-75 284.3 213 68.5
Aqoxy5G01011 Aquilegia oxysepala HOM05D006972 ORTHO05D008519 1.0e-74 283.9 213 68.5
Gohir.D07G177900 Gossypium hirsutum HOM05D006972 ORTHO05D008519 1.5e-73 280.0 213 65.7
Phvul.002G116601 Phaseolus vulgaris HOM05D006972 ORTHO05D008519 1.5e-73 280.0 213 68.1
Lj2g0018473 Lotus japonicus HOM05D006972 ORTHO05D008519 2.6e-73 279.3 199 72.4
Gohir.A07G171100 Gossypium hirsutum HOM05D006972 ORTHO05D008519 5.7e-73 278.1 213 65.7
THA.LOC104826441 Tarenaya hassleriana HOM05D006972 ORTHO05D008519 5.7e-73 278.1 213 63.4
AL8G45620 Arabidopsis lyrata HOM05D006972 ORTHO05D008519 9.7e-73 277.3 214 64.5
Gorai.001G199000 Gossypium raimondii HOM05D006972 ORTHO05D008519 1.7e-72 276.6 213 65.3
Lsat_1_v5_gn_2_73640 Lactuca sativa HOM05D006972 ORTHO05D008519 1.7e-72 276.6 207 67.6
AUR62021571 Chenopodium quinoa HOM05D006972 ORTHO05D008519 2.2e-72 276.2 213 64.3
ECA238G2655 Erigeron canadensis HOM05D006972 ORTHO05D008519 3.7e-72 275.4 209 67.9
VMungo1215G1992 Vigna mungo HOM05D006972 ORTHO05D008519 3.7e-72 275.4 213 67.1
PSO541G2195 Papaver somniferum HOM05D006972 ORTHO05D008519 8.2e-72 274.2 208 66.8
Haze_03661 Corylus avellana HOM05D006972 ORTHO05D008519 1.4e-71 273.5 176 79.5
CAN.G354.14 Capsicum annuum HOM05D006972 ORTHO05D008519 1.8e-71 273.1 199 68.8
AUR62008520 Chenopodium quinoa HOM05D006972 ORTHO05D008519 1.8e-71 273.1 213 63.4
HanXRQChr14g0442531 Helianthus annuus HOM05D006972 ORTHO05D008519 3.1e-71 272.3 207 67.1
Hund19696 Selenicereus undatus HOM05D006972 ORTHO05D008519 5.3e-71 271.6 214 61.7
Zm00001eb002450 Zea mays HOM05D006972 ORTHO05D008519 5.3e-71 271.6 212 62.3
EL10Ac5g11121 Beta vulgaris HOM05D006972 ORTHO05D008519 7.0e-71 271.2 214 62.6
ATR0807G046 Amborella trichopoda HOM05D006972 ORTHO05D008519 7.7e-70 267.7 211 63.0
Ah.02g113990 Amaranthus hybridus HOM05D006972 ORTHO05D008519 2.9e-69 265.8 209 60.8
PSO675G3277 Papaver somniferum HOM05D006972 ORTHO05D008519 7.2e-68 261.2 189 68.3
CDE04G1133 Ceratophyllum demersum HOM05D006972 ORTHO05D008519 1.6e-67 260.0 198 64.6
FAN23G2574 Fragaria x ananassa HOM05D006972 ORTHO05D008519 1.6e-67 260.0 251 57.8
AT5G66005 Arabidopsis thaliana HOM05D006972 ORTHO05D008519 2.1e-67 259.6 214 59.8
arahy.Tifrunner.gnm1.ann1.B19VPR Arachis hypogaea HOM05D006972 ORTHO05D008519 2.1e-67 259.6 186 72.6
arahy.Tifrunner.gnm1.ann1.K20VQB Arachis hypogaea HOM05D006972 ORTHO05D008519 2.1e-67 259.6 186 72.6
HPP92_026034 Vanilla planifolia HOM05D006972 ORTHO05D008519 2.1e-67 259.6 210 59.0
Medtr5g024200 Medicago truncatula HOM05D006972 ORTHO05D008519 2.0e-65 253.1 182 71.4
FvH4_1g10330 Fragaria vesca HOM05D006972 ORTHO05D008519 4.8e-64 248.4 175 70.9
COL.COLO4_24144 Corchorus olitorius HOM05D006972 ORTHO05D008519 5.9e-62 241.5 191 62.8
Sc03g0003950 Simmondsia chinensis HOM05D006972 ORTHO05D008519 7.7e-62 241.1 176 67.6
SGA_v2.0_scaffold132G34519 Striga asiatica HOM05D006972 ORTHO05D008519 1.0e-61 240.7 194 62.4
Carub.0008s2851 Capsella rubella HOM05D006972 ORTHO05D008519 1.1e-60 237.3 219 58.4
RcHm_v2.0_Chr2g0090391 Rosa chinensis HOM05D006972 ORTHO05D008519 8.8e-58 227.6 160 71.9
RcHm_v2.0_Chr1g0346531 Rosa chinensis HOM05D006972 ORTHO05D008519 9.8e-57 224.2 160 70.6
unitig_747.g21812 Utricularia gibba HOM05D006972 ORTHO05D008519 4.2e-52 208.8 223 54.3
MD15G1231300 Malus domestica HOM05D006972 ORTHO05D008519 1.5e-49 200.3 118 81.4
Peaxi162Scf00122g02416 Petunia axillaris HOM05D006972 ORTHO05D008519 5.7e-49 198.4 117 79.5
FAN26G0227 Fragaria x ananassa HOM05D006972 ORTHO05D008519 5.9e-46 188.3 175 60.6
Os03g0130750 Oryza sativa ssp. japonica HOM05D006972 ORTHO05D008519 2.1e-43 179.9 117 69.2
FAN28G2862 Fragaria x ananassa HOM05D006972 ORTHO05D008519 2.6e-41 172.9 131 67.2
Mapoly0114s0024 Marchantia polymorpha HOM05D006972 ORTHO05D008519 3.4e-41 172.6 224 45.5
Sopen03g005970 Solanum pennellii HOM05D006972 ORTHO05D008519 3.3e-36 156.0 125 64.8
CANSAT35G0485 Cannabis sativa HOM05D006972 ORTHO05D008519 1.0e-34 151.0 90 83.3
RcHm_v2.0_Chr5g0047551 Rosa chinensis HOM05D006972 ORTHO05D008519 1.4e-31 140.6 80 82.5
SMO352G0055 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 7.0e-31 138.3 153 48.4
Lsat_1_v5_gn_5_10160 Lactuca sativa HOM05D006972 ORTHO05D008519 7.8e-30 134.8 129 57.4
MD15G1231400 Malus domestica HOM05D006972 ORTHO05D008519 5.0e-29 132.1 74 82.4
RcHm_v2.0_Chr5g0015201 Rosa chinensis HOM05D006972 ORTHO05D008519 1.2e-27 127.5 70 85.7
Cre16.g682050 Chlamydomonas reinhardtii HOM05D006972 ORTHO05D008519 4.7e-27 125.6 211 38.4
Glyma.11G085800 Glycine max HOM05D006972 ORTHO05D008519 4.4e-25 119.0 160 46.9
Actinidia22899 Actinidia chinensis HOM05D006972 ORTHO05D008519 3.7e-24 115.9 74 74.3
Mapoly0023s0154 Marchantia polymorpha HOM05D006972 ORTHO05D008519 8.6e-21 104.8 205 33.2
MCO16G109 Micromonas commoda HOM05D006972 ORTHO05D008519 8.6e-21 104.8 208 35.1
Pp3c7_7150 Physcomitrium patens HOM05D006972 ORTHO05D008519 1.1e-20 104.4 205 33.7
SMO147G0393 Selaginella moellendorffii HOM05D006972 ORTHO05D008519 2.5e-20 103.2 151 34.4
Lsat_1_v5_gn_1_125281 Lactuca sativa HOM05D006972 ORTHO05D008519 4.7e-19 99.0 60 76.7
Pp3c11_19180 Physcomitrium patens HOM05D006972 ORTHO05D008519 6.2e-19 98.6 205 32.2
arahy.Tifrunner.gnm1.ann1.9GY3HT Arachis hypogaea HOM05D006972 ORTHO05D008519 5.2e-18 95.5 75 64.0
arahy.Tifrunner.gnm1.ann1.J6JT3S Arachis hypogaea HOM05D006972 ORTHO05D008519 4.9e-16 89.0 56 73.2
PRCOL_00004399 Prasinoderma coloniale HOM05D006972 ORTHO05D008519 1.9e-15 87.0 196 31.6
CBR_g19759 Chara braunii HOM05D006972 ORTHO05D008519 6.0e-14 82.0 150 38.0
Lsat_1_v5_gn_8_30121 Lactuca sativa HOM05D006972 ORTHO05D008519 3.0e-13 79.7 82 54.9
MD02G1111700 Malus domestica HOM05D006972 ORTHO05D008519 3.3e-12 76.3 46 73.9
arahy.Tifrunner.gnm1.ann1.A1T4XS Arachis hypogaea HOM05D006972 ORTHO05D008519 3.6e-11 72.8 70 54.3
arahy.Tifrunner.gnm1.ann1.BGC890 Arachis hypogaea HOM05D006972 ORTHO05D008519 1.2e-09 67.8 61 54.1
RcHm_v2.0_Chr5g0015211 Rosa chinensis HOM05D006972 ORTHO05D008519 4.9e-08 62.4 33 81.8
Lsat_1_v5_gn_3_12301 Lactuca sativa HOM05D035019 ORTHO05D008519 6.0e-06 55.5 29 82.8
Lsat_1_v5_gn_8_143201 Lactuca sativa HOM05D035019 ORTHO05D008519 6.0e-06 55.5 29 82.8
Migut.L00776 Erythranthe guttata HOM05D006972 ORTHO05D008519 7.8e-06 55.1 28 82.1


User provided reference genes

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