Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p052479 Quercus lobata HOM05D004334 ORTHO05D004763 3.7e-117 424.9 211 100.0
CiPaw.08G179800 Carya illinoinensis HOM05D004334 ORTHO05D004763 5.8e-70 268.1 171 76.0
Cfa007045 Carpinus fangiana HOM05D004334 ORTHO05D004763 3.5e-67 258.8 162 80.2
CiPaw.07G005200 Carya illinoinensis HOM05D004334 ORTHO05D004763 6.6e-66 254.6 171 75.4
TWI73G1167 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 3.3e-65 252.3 173 71.7
Prupe.7G177700 Prunus persica HOM05D004334 ORTHO05D004763 7.3e-65 251.1 173 68.8
Dinv40159 Davidia involucrata HOM05D004334 ORTHO05D004763 2.8e-64 249.2 173 68.2
Thecc.01G009500 Theobroma cacao HOM05D004334 ORTHO05D004763 6.2e-64 248.1 173 71.1
CSS0027377 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 4.0e-63 245.4 167 69.5
Cc07_g11490 Coffea canephora HOM05D004334 ORTHO05D004763 9.0e-63 244.2 167 68.9
Gohir.A02G175700 Gossypium hirsutum HOM05D004334 ORTHO05D004763 2.6e-62 242.7 173 70.5
Gohir.D03G004200 Gossypium hirsutum HOM05D004334 ORTHO05D004763 3.4e-62 242.3 173 70.5
Gorai.003G004400 Gossypium raimondii HOM05D004334 ORTHO05D004763 3.4e-62 242.3 173 70.5
FAN26G1367 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.3e-61 240.4 182 67.6
Haze_03684 Corylus avellana HOM05D004334 ORTHO05D004763 1.7e-61 240.0 150 81.3
Dinv08539 Davidia involucrata HOM05D004334 ORTHO05D004763 2.9e-61 239.2 173 67.6
FAN23G2490 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.4e-61 238.0 172 68.6
Rhsim08G0028900 Rhododendron simsii HOM05D004334 ORTHO05D004763 1.1e-60 237.3 165 65.5
MD15G1235400 Malus domestica HOM05D004334 ORTHO05D004763 3.2e-60 235.7 173 64.7
FvH4_1g10780 Fragaria vesca HOM05D004334 ORTHO05D004763 1.2e-59 233.8 172 67.4
CSS0049695 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 2.7e-59 232.6 166 64.5
Actinidia17393 Actinidia chinensis HOM05D004334 ORTHO05D004763 4.6e-59 231.9 165 67.3
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea HOM05D004334 ORTHO05D004763 4.6e-59 231.9 209 54.1
CAN.G890.9 Capsicum annuum HOM05D004334 ORTHO05D004763 6.0e-59 231.5 166 67.5
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla HOM05D004334 ORTHO05D004763 6.0e-59 231.5 166 65.7
RcHm_v2.0_Chr2g0097961 Rosa chinensis HOM05D004334 ORTHO05D004763 7.9e-59 231.1 173 67.1
Gorai.007G189900 Gossypium raimondii HOM05D004334 ORTHO05D004763 1.3e-58 230.3 174 68.4
Atru.chr3.934 Acer truncatum HOM05D004334 ORTHO05D004763 3.9e-58 228.8 167 68.3
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea HOM05D004334 ORTHO05D004763 5.1e-58 228.4 173 61.8
Ciclev10025980m.g Citrus clementina HOM05D004334 ORTHO05D004763 5.1e-58 228.4 172 64.0
MD02G1121800 Malus domestica HOM05D004334 ORTHO05D004763 5.1e-58 228.4 173 63.0
Potri.005G104800 Populus trichocarpa HOM05D004334 ORTHO05D004763 5.1e-58 228.4 157 72.6
Phvul.002G112900 Phaseolus vulgaris HOM05D004334 ORTHO05D004763 1.1e-57 227.3 173 64.2
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea HOM05D004334 ORTHO05D004763 1.5e-57 226.9 173 61.3
Potri.005G104700 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.3e-57 225.7 157 71.3
Gohir.A11G171000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 5.6e-57 224.9 173 67.6
Gohir.D11G178000 Gossypium hirsutum HOM05D004334 ORTHO05D004763 5.6e-57 224.9 173 67.1
MBI05_g39718_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 1.6e-56 223.4 173 60.7
Aqoxy6G01836 Aquilegia oxysepala HOM05D004334 ORTHO05D004763 2.8e-56 222.6 173 60.7
VMungo1215G1979 Vigna mungo HOM05D004334 ORTHO05D004763 3.7e-56 222.2 165 63.6
Nitab4.5_0004994g0030 Nicotiana tabacum HOM05D004334 ORTHO05D004763 8.1e-56 221.1 166 63.9
Oeu012549.1 Olea europaea HOM05D004334 ORTHO05D004763 1.1e-55 220.7 168 61.3
Lalb_Chr05g0212061 Lupinus albus HOM05D004334 ORTHO05D004763 3.1e-55 219.2 173 62.4
Eucgr.I02283 Eucalyptus grandis HOM05D004334 ORTHO05D004763 4.0e-55 218.8 171 62.6
Manes.03G080400 Manihot esculenta HOM05D004334 ORTHO05D004763 5.3e-55 218.4 160 66.2
Nn6g31831 Nelumbo nucifera HOM05D004334 ORTHO05D004763 5.3e-55 218.4 173 59.0
TAR376G1081 Trochodendron aralioides HOM05D004334 ORTHO05D004763 5.3e-55 218.4 173 63.6
Lsat_1_v5_gn_4_143501 Lactuca sativa HOM05D004334 ORTHO05D004763 9.0e-55 217.6 173 60.7
Sopen02g027910 Solanum pennellii HOM05D004334 ORTHO05D004763 9.0e-55 217.6 166 63.9
TPR.G25124 Trifolium pratense HOM05D004334 ORTHO05D004763 2.6e-54 216.1 173 59.5
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea HOM05D004334 ORTHO05D004763 4.5e-54 215.3 173 59.5
vmacro18446 Vaccinium macrocarpon HOM05D004334 ORTHO05D004763 4.5e-54 215.3 164 63.4
Lj2g0016931 Lotus japonicus HOM05D004334 ORTHO05D004763 1.0e-53 214.2 173 57.8
Solyc02g083150.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 1.3e-53 213.8 166 63.3
Psat2g151080 Pisum sativum HOM05D004334 ORTHO05D004763 2.2e-53 213.0 173 57.8
Glyma.11G082600 Glycine max HOM05D004334 ORTHO05D004763 2.9e-53 212.6 172 62.2
PGSC0003DMG400001577 Solanum tuberosum HOM05D004334 ORTHO05D004763 2.9e-53 212.6 166 62.7
Oeu039717.1 Olea europaea HOM05D004334 ORTHO05D004763 4.9e-53 211.8 168 59.5
ECA232G0620 Erigeron canadensis HOM05D003302 ORTHO05D003785 1.4e-52 210.3 173 59.5
Eucgr.J02517 Eucalyptus grandis HOM05D004334 ORTHO05D004763 1.4e-52 210.3 160 64.4
Ca_24954_v3 Cicer arietinum L. HOM05D004334 ORTHO05D004763 2.5e-52 209.5 171 58.5
PGR102G0214 Punica granatum HOM05D004334 ORTHO05D004763 5.5e-52 208.4 173 60.7
Migut.H02192 Erythranthe guttata HOM05D004334 ORTHO05D004763 9.3e-52 207.6 166 60.8
Sc03g0003810 Simmondsia chinensis HOM05D004334 ORTHO05D004763 1.6e-51 206.8 171 58.5
FAN19G0005 Fragaria x ananassa HOM05D004334 ORTHO05D004763 3.5e-51 205.7 145 71.7
Potri.007G060100 Populus trichocarpa HOM05D004334 ORTHO05D004763 3.5e-51 205.7 145 69.0
MSTRG.2739 Avicennia marina HOM05D004334 ORTHO05D004763 1.3e-50 203.8 167 57.5
Medtr5g023230 Medicago truncatula HOM05D004334 ORTHO05D004763 3.0e-50 202.6 173 56.6
MELO3C007955.2 Cucumis melo HOM05D004334 ORTHO05D004763 1.5e-49 200.3 173 59.5
Nitab4.5_0005413g0010 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.5e-49 199.5 167 59.9
CsaV3_6G047640 Cucumis sativus L. HOM05D004334 ORTHO05D004763 4.3e-49 198.7 173 59.0
Peaxi162Scf00300g00517 Petunia axillaris HOM05D004334 ORTHO05D004763 4.3e-49 198.7 166 60.2
Sed0027006 Sechium edule HOM05D004334 ORTHO05D004763 9.6e-49 197.6 166 60.8
PGR119G0893 Punica granatum HOM05D004334 ORTHO05D004763 1.3e-48 197.2 162 61.1
PSO541G2607 Papaver somniferum HOM05D004334 ORTHO05D004763 6.2e-48 194.9 173 54.9
Sabra05G0086000 Salix brachista HOM05D004334 ORTHO05D004763 2.4e-47 193.0 155 65.2
ATR0661G230 Amborella trichopoda HOM05D004334 ORTHO05D004763 3.1e-47 192.6 170 52.4
PSO675G0891 Papaver somniferum HOM05D004334 ORTHO05D004763 3.1e-47 192.6 173 54.3
HanXRQChr09g0256961 Helianthus annuus HOM05D004334 ORTHO05D004763 2.0e-46 189.9 173 56.1
MBI08_g35872_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 3.4e-46 189.1 160 58.1
AT3G51390 Arabidopsis thaliana HOM05D004334 ORTHO05D004763 3.8e-45 185.7 173 54.3
Solyc02g061810.3 Solanum lycopersicum HOM05D004334 ORTHO05D004763 6.5e-45 184.9 155 59.4
EL10Ac6g13347 Beta vulgaris HOM05D004334 ORTHO05D004763 1.1e-44 184.1 169 55.6
ClCG01G020710 Citrullus lanatus HOM05D004334 ORTHO05D004763 1.1e-44 184.1 160 60.0
Thhalv10010516m.g Eutrema salsugineum HOM05D004334 ORTHO05D004763 1.1e-44 184.1 170 56.5
FAN09G1010 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.9e-44 183.3 173 58.4
FAN09G3278 Fragaria x ananassa HOM05D004334 ORTHO05D004763 1.9e-44 183.3 173 58.4
Sopen02g012850 Solanum pennellii HOM05D004334 ORTHO05D004763 4.2e-44 182.2 152 59.9
TWI53G1416 Tripterygium wilfordii HOM05D004334 ORTHO05D004763 4.2e-44 182.2 173 55.5
Lalb_Chr09g0321381 Lupinus albus HOM05D002155 ORTHO05D004763 5.5e-44 181.8 152 59.2
AL5G31840 Arabidopsis lyrata HOM05D004334 ORTHO05D004763 1.2e-43 180.6 173 53.8
QL10p037295 Quercus lobata HOM05D004334 ORTHO05D004763 2.1e-43 179.9 95 100.0
Carub.0005s1777 Capsella rubella HOM05D004334 ORTHO05D004763 3.5e-43 179.1 173 53.2
FvH4_6g14950 Fragaria vesca HOM05D004334 ORTHO05D004763 4.6e-43 178.7 173 57.8
CAN.G23.17 Capsicum annuum HOM05D004334 ORTHO05D004763 7.9e-43 177.9 155 59.4
CARHR160990 Cardamine hirsuta HOM05D004334 ORTHO05D004763 1.0e-42 177.6 173 52.6
FAN02G4027 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.3e-42 176.4 173 56.6
FAN14G2747 Fragaria x ananassa HOM05D004334 ORTHO05D004763 2.3e-42 176.4 173 57.2
THA.LOC104821351 Tarenaya hassleriana HOM05D004334 ORTHO05D004763 2.3e-42 176.4 164 54.9
A09p44490 Brassica napus HOM05D004334 ORTHO05D004763 5.1e-42 175.3 175 52.0
BraA09t39907Z Brassica rapa HOM05D004334 ORTHO05D004763 5.1e-42 175.3 175 52.0
FAN05G4181 Fragaria x ananassa HOM05D004334 ORTHO05D004763 6.7e-42 174.9 173 57.2
BolC8t50281H Brassica oleracea HOM05D004334 ORTHO05D004763 3.3e-41 172.6 175 52.6
AUR62026202 Chenopodium quinoa HOM05D004334 ORTHO05D004763 4.3e-41 172.2 156 57.1
Sp5g10830 Schrenkiella parvula HOM05D004334 ORTHO05D004763 5.7e-41 171.8 173 50.9
C08p26670 Brassica napus HOM05D004334 ORTHO05D004763 7.4e-41 171.4 174 52.9
AUR62026391 Chenopodium quinoa HOM05D004334 ORTHO05D004763 1.3e-40 170.6 156 57.1
BcaB01g00520 Brassica carinata HOM05D004334 ORTHO05D004763 2.8e-40 169.5 174 51.7
BraA01t02255Z Brassica rapa HOM05D004334 ORTHO05D004763 2.8e-40 169.5 165 55.2
DCAR_011587 Daucus carota HOM05D004334 ORTHO05D004763 2.8e-40 169.5 146 56.8
BcaNung00388 Brassica carinata HOM05D004334 ORTHO05D004763 6.9e-39 164.9 155 56.1
Cpa.g.sc6.335 Carica papaya HOM05D004334 ORTHO05D004763 2.2e-37 159.8 205 44.4
HanXRQChr15g0487491 Helianthus annuus HOM05D004334 ORTHO05D004763 2.9e-37 159.5 157 50.3
SGA_v2.0_scaffold108G30985 Striga asiatica HOM05D004334 ORTHO05D004763 6.5e-37 158.3 177 48.0
Actinidia02363 Actinidia chinensis HOM05D004334 ORTHO05D004763 1.9e-36 156.8 111 65.8
Duzib147G0009 Durio zibethinus HOM05D004334 ORTHO05D004763 1.2e-35 154.1 106 72.6
Nn5g30900 Nelumbo nucifera HOM05D004334 ORTHO05D004763 4.6e-35 152.1 116 64.7
Hund03662 Selenicereus undatus HOM05D004334 ORTHO05D004763 8.2e-32 141.4 166 45.8
CSS0034111 Camellia sinensis var. sinensis HOM05D004334 ORTHO05D004763 1.1e-31 141.0 106 60.4
HPP92_022390 Vanilla planifolia HOM05D004334 ORTHO05D004763 2.4e-31 139.8 143 50.3
unitig_699.g19572 Utricularia gibba HOM05D004334 ORTHO05D004763 1.5e-30 137.1 125 52.0
Peaxi162Scf00439g00007 Petunia axillaris HOM05D004334 ORTHO05D004763 3.4e-30 136.0 106 62.3
Ah.02g129060 Amaranthus hybridus HOM05D004334 ORTHO05D004763 1.3e-29 134.0 169 46.2
Nitab4.5_0000188g0270 Nicotiana tabacum HOM05D004334 ORTHO05D004763 1.3e-29 134.0 106 62.3
CDE02G4661 Ceratophyllum demersum HOM05D004334 ORTHO05D004763 2.2e-29 133.3 176 41.5
Os12g0480000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 1.1e-23 114.4 144 41.0
unitig_27.g25346 Utricularia gibba HOM05D004334 ORTHO05D004763 2.0e-22 110.2 69 71.0
SGA_v2.0_scaffold2G00960 Striga asiatica HOM05D004334 ORTHO05D004763 1.3e-21 107.5 156 39.7
SalBow3G0047 Salvia bowleyana HOM05D004334 ORTHO05D004763 1.7e-21 107.1 86 55.8
MBI08_g09580_MAGBIO Magnolia biondii HOM05D004334 ORTHO05D004763 6.5e-21 105.1 76 60.5
Sabra07G0050800 Salix brachista HOM05D004334 ORTHO05D004763 1.2e-19 100.9 118 48.3
Actinidia22928 Actinidia chinensis HOM05D004334 ORTHO05D004763 1.4e-18 97.4 80 62.5
Lj4A228G17 Lonicera japonica HOM05D004334 ORTHO05D004763 8.8e-18 94.7 58 72.4
Os04g0562000 Oryza sativa ssp. japonica HOM05D004334 ORTHO05D004763 2.0e-14 83.6 175 33.7
SEGI_05177 Sequoiadendron giganteum HOM05D004334 ORTHO05D004763 7.7e-14 81.6 101 39.6
BcaC09g50093 Brassica carinata HOM05D004334 ORTHO05D004763 1.0e-13 81.3 149 34.9
C01p29130 Brassica napus HOM05D004334 ORTHO05D004763 5.0e-13 79.0 114 41.2
PGSC0003DMG403008678 Solanum tuberosum HOM05D004334 ORTHO05D004763 9.4e-12 74.7 65 56.9
SHI49197 Sapria himalayana HOM05D004334 ORTHO05D004763 1.2e-11 74.3 76 47.4
BolC1t02844H Brassica oleracea HOM05D004334 ORTHO05D004763 4.0e-10 69.3 128 38.3
RcHm_v2.0_Chr3g0494861 Rosa chinensis HOM05D004334 ORTHO05D004763 5.2e-10 68.9 52 65.4
Lsat_1_v5_gn_2_75001 Lactuca sativa HOM05D004334 ORTHO05D004763 1.2e-09 67.8 162 29.0
Ah.03g134170 Amaranthus hybridus HOM05D004334 ORTHO05D004763 2.6e-09 66.6 58 56.9
Sabra07G0050700 Salix brachista HOM05D004334 ORTHO05D004763 7.5e-09 65.1 47 68.1
Mapoly0218s0003 Marchantia polymorpha HOM05D004334 ORTHO05D004763 6.3e-08 62.0 96 34.4
BcaNung05551 Brassica carinata HOM05D004334 ORTHO05D004763 2.4e-07 60.1 59 54.2
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 5.4e-07 58.9 37 70.3
PSO063G3446 Papaver somniferum HOM05D004334 ORTHO05D004763 1.6e-06 57.4 38 57.9
Nitab4.5_0001310g0100 Nicotiana tabacum HOM05D004334 ORTHO05D004763 2.0e-06 57.0 49 59.2


User provided reference genes

Program Settings