Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 4.0e-191 671.4 366 100.0
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 4.6e-147 525.0 367 75.5
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 2.3e-146 522.7 373 74.0
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 1.2e-144 516.9 373 73.2
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 7.1e-132 474.6 365 68.5
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.0e-130 470.7 374 65.5
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 5.3e-127 458.4 293 75.8
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 5.3e-127 458.4 298 76.5
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 9.0e-127 457.6 299 76.3
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 7.6e-126 454.5 375 63.7
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 7.6e-126 454.5 299 73.6
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 2.9e-125 452.6 298 73.2
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 6.4e-125 451.4 297 73.4
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 8.4e-125 451.1 287 76.7
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 1.1e-124 450.7 288 76.0
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.1e-124 450.7 298 72.8
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 3.2e-124 449.1 283 77.7
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 1.6e-123 446.8 304 72.0
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 7.9e-123 444.5 308 70.5
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 5.1e-122 441.8 306 73.5
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 5.1e-122 441.8 286 75.9
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 8.7e-122 441.0 283 77.0
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 9.6e-121 437.6 282 76.2
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.1e-120 436.4 302 73.2
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 2.1e-120 436.4 289 71.6
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.6e-120 435.6 301 73.8
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 1.1e-119 434.1 298 75.2
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 1.8e-119 433.3 298 69.5
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.4e-119 433.0 280 76.1
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.1e-119 432.6 301 72.8
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 4.0e-119 432.2 291 71.1
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 6.9e-119 431.4 301 72.8
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 2.6e-118 429.5 288 73.6
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 3.4e-118 429.1 303 72.9
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 7.6e-118 427.9 280 75.4
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 1.3e-117 427.2 291 71.1
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 2.9e-117 426.0 304 69.1
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 2.9e-117 426.0 304 69.1
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 6.4e-117 424.9 299 71.6
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 8.4e-117 424.5 300 70.7
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.1e-116 424.1 289 71.6
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 4.2e-116 422.2 292 69.5
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 7.1e-116 421.4 290 72.4
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 1.6e-115 420.2 299 69.6
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 2.1e-115 419.9 295 67.5
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 2.1e-115 419.9 290 71.7
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 1.0e-114 417.5 298 71.8
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 1.8e-114 416.8 296 67.9
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 1.9e-113 413.3 293 66.6
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 9.6e-113 411.0 291 66.7
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 9.6e-113 411.0 280 68.6
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 9.6e-113 411.0 291 66.7
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 2.8e-112 409.5 282 71.6
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 4.0e-111 405.6 301 67.4
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 1.2e-110 404.1 296 64.5
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 1.5e-110 403.7 294 66.0
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 1.5e-110 403.7 286 67.1
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 1.5e-110 403.7 303 64.7
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 2.6e-110 402.9 279 68.5
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.6e-110 402.9 279 68.1
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 3.4e-110 402.5 294 66.3
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 3.4e-110 402.5 292 68.5
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 4.5e-110 402.1 294 67.7
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 1.3e-109 400.6 289 66.8
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 2.2e-109 399.8 301 66.8
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 2.9e-109 399.4 301 66.8
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 4.9e-109 398.7 301 66.8
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 1.4e-108 397.1 283 70.0
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 1.9e-108 396.7 296 64.2
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 2.5e-108 396.4 326 61.0
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 4.6e-107 392.1 297 63.3
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 6.0e-107 391.7 283 67.5
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 3.0e-106 389.4 276 68.8
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 2.5e-105 386.3 297 63.3
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 3.3e-105 386.0 284 65.1
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.3e-105 386.0 283 65.4
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.8e-103 380.2 283 65.0
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 4.1e-103 379.0 284 65.1
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 1.2e-102 377.5 273 66.3
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 1.2e-102 377.5 264 67.0
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 5.9e-102 375.2 299 62.2
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 1.0e-101 374.4 289 64.0
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.2e-99 367.5 286 61.5
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 8.7e-98 361.3 263 65.0
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.8e-95 353.6 293 62.8
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 1.0e-93 347.8 298 58.1
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 2.2e-93 346.7 298 57.7
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 1.4e-92 344.0 282 59.9
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 3.2e-92 342.8 285 58.6
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 1.2e-91 340.9 220 78.2
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 8.8e-90 334.7 300 56.7
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 2.4e-87 326.6 228 70.6
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 4.1e-87 325.9 282 58.2
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.2e-85 320.1 289 57.1
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 6.1e-75 285.4 286 52.1
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 2.3e-74 283.5 288 52.4
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.2e-73 281.2 286 50.3
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 4.4e-73 279.3 307 47.2
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 2.0e-70 270.4 230 60.4
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.5e-70 269.6 282 47.9
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 3.8e-69 266.2 214 62.1
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 1.4e-63 247.7 281 50.2
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 3.1e-63 246.5 294 49.0
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.2e-62 244.6 185 63.8
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 2.0e-62 243.8 285 49.5
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 1.0e-61 241.5 205 60.0
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 3.2e-60 236.5 304 45.1
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.2e-59 234.6 185 64.9
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 4.9e-56 222.6 186 60.8
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 1.1e-55 221.5 166 63.9
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 4.5e-54 216.1 180 59.4
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.9e-48 196.8 294 39.5
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.0e-45 188.3 292 39.0
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 3.9e-45 186.4 111 78.4
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 9.5e-44 181.8 166 55.4
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 1.6e-43 181.0 302 37.4
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 6.2e-43 179.1 113 69.9
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 3.2e-39 166.8 104 74.0
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 5.4e-39 166.0 134 67.2
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 1.9e-36 157.5 144 53.5
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.8e-34 151.0 117 63.2
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 6.4e-32 142.5 187 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 2.2e-24 117.5 178 36.5
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.4e-23 114.0 66 75.8
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 2.1e-22 110.9 113 49.6
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 3.0e-21 107.1 63 74.6
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 8.6e-21 105.5 63 74.6
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 2.5e-20 104.0 53 84.9
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 7.3e-20 102.4 64 73.4
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.4e-18 98.2 64 70.3
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 3.1e-18 97.1 54 79.6
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 1.7e-13 81.3 131 31.3
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 8.7e-13 79.0 48 72.9
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 5.6e-12 76.3 47 70.2
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 2.2e-08 64.3 46 58.7
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 4.9e-08 63.2 60 55.0
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 1.4e-07 61.6 60 55.0


User provided reference genes

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