Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 0.0e+00 1183.7 655 100.0
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 8.6e-197 691.0 717 62.1
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 1.9e-167 593.6 639 60.7
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 8.7e-165 584.7 485 69.3
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.5e-164 583.9 642 55.3
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 8.4e-160 568.2 653 55.4
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.4e-159 567.4 648 54.0
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 3.2e-159 566.2 647 53.6
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 6.0e-158 562.0 661 54.8
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 8.7e-157 558.1 643 54.1
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 4.3e-156 555.8 660 51.4
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 3.7e-155 552.7 668 51.8
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 9.0e-154 548.1 639 54.1
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.1e-151 541.2 644 53.7
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 3.2e-151 539.7 649 53.8
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 9.3e-151 538.1 669 52.6
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 6.1e-150 535.4 643 53.7
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 1.0e-149 534.6 648 55.9
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-149 534.3 654 55.8
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 3.9e-149 532.7 658 52.4
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 3.9e-149 532.7 648 52.0
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 5.7e-148 528.9 667 49.8
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 7.4e-148 528.5 652 52.1
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.3e-147 527.7 653 51.3
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 1.3e-147 527.7 648 55.7
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.6e-147 527.3 685 48.9
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 2.8e-147 526.6 661 50.1
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 6.3e-147 525.4 685 48.8
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 6.3e-147 525.4 649 55.5
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 3.1e-146 523.1 638 51.4
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 4.1e-146 522.7 674 48.8
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 1.2e-145 521.2 638 51.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 4.5e-145 519.2 652 51.1
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.2e-144 516.9 658 50.2
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 2.9e-144 516.5 727 47.3
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 1.4e-141 507.7 646 53.9
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 2.0e-140 503.8 706 50.4
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 1.3e-139 501.1 653 50.1
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.4e-138 497.7 651 50.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.8e-138 497.3 651 54.1
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.0e-137 493.8 661 50.7
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 2.0e-137 493.8 670 51.8
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 3.4e-137 493.0 656 50.3
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 3.4e-137 493.0 686 48.1
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.2e-136 490.3 668 52.1
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 6.5e-136 488.8 646 47.2
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 5.5e-135 485.7 659 49.2
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 9.4e-135 485.0 641 50.7
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 6.1e-134 482.3 336 79.2
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 2.3e-133 480.3 672 51.2
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 6.3e-131 472.2 646 50.8
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 9.1e-130 468.4 656 47.7
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-129 468.0 629 49.8
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.6e-129 467.6 662 51.1
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 2.0e-129 467.2 633 48.3
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 2.0e-129 467.2 678 45.7
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 2.0e-129 467.2 642 47.5
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 3.5e-129 466.5 662 49.2
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 4.5e-129 466.1 652 51.2
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 7.7e-129 465.3 398 64.3
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 1.3e-128 464.5 662 46.4
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 6.5e-128 462.2 628 48.6
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 8.5e-128 461.8 656 51.2
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 1.9e-127 460.7 681 45.1
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 2.5e-127 460.3 655 47.2
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.5e-127 460.3 662 50.6
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 3.2e-127 459.9 666 50.3
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.2e-127 458.8 658 50.6
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.6e-126 457.6 648 46.0
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 4.7e-126 456.1 625 50.1
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.8e-125 454.1 666 45.8
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 1.8e-125 454.1 639 47.1
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 4.0e-125 453.0 345 73.9
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 5.2e-125 452.6 652 47.1
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 5.2e-125 452.6 672 48.8
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.6e-124 450.3 678 49.1
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 4.4e-124 449.5 666 44.4
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 4.4e-124 449.5 655 45.3
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 3.7e-123 446.4 650 45.5
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 3.7e-123 446.4 620 47.9
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 6.3e-123 445.7 641 47.6
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.8e-122 444.1 650 47.2
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 2.4e-122 443.7 649 45.6
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.0e-121 440.7 658 44.4
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.0e-120 438.3 648 47.1
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 1.7e-120 437.6 685 43.6
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.2e-120 437.2 650 45.7
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 6.5e-120 435.6 650 45.1
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 2.7e-118 430.3 388 63.1
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 2.7e-118 430.3 742 42.5
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 1.7e-115 421.0 620 46.5
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 8.3e-115 418.7 646 48.6
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 2.7e-110 403.7 678 42.6
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 7.0e-106 389.0 621 43.2
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.6e-102 377.9 575 46.1
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 5.2e-101 372.9 621 44.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 1.7e-99 367.9 542 45.8
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 1.6e-97 361.3 633 42.5
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 9.5e-95 352.1 628 40.9
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.4e-93 348.2 348 56.3
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 2.6e-92 344.0 348 55.7
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 4.0e-85 320.1 667 36.0
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 2.1e-78 297.7 650 37.1
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.0e-60 238.0 217 61.8
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.9e-58 231.5 367 43.1
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 5.1e-56 223.4 322 47.8
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 1.3e-54 218.8 432 35.4
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 6.9e-53 213.0 443 39.3
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.6e-52 211.1 448 38.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-50 204.9 125 80.0
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.3e-50 202.6 558 32.4
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 3.9e-48 197.2 315 40.0
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 7.4e-47 193.0 223 53.8
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 2.4e-45 188.0 285 42.8
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 9.0e-45 186.0 541 30.7
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 8.4e-43 179.5 116 75.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 7.1e-42 176.4 560 31.1
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 7.1e-42 176.4 110 78.2
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 3.0e-40 171.0 116 71.6
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 8.7e-40 169.5 191 51.8
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 4.8e-38 163.7 111 76.6
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 4.8e-38 163.7 111 74.8
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 1.2e-36 159.1 112 75.9
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 1.5e-36 158.7 362 38.1
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 2.5e-34 151.4 445 35.5
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 5.7e-31 140.2 89 78.7
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.5e-28 132.1 91 75.8
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 2.0e-28 131.7 90 74.4
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 2.9e-27 127.9 225 36.9
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 9.4e-26 122.9 110 53.6
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 5.7e-23 113.6 342 26.9
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 3.1e-21 107.8 141 48.9
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 9.1e-21 106.3 84 67.9
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 9.1e-21 106.3 141 48.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 2.6e-20 104.8 372 31.7
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 3.4e-20 104.4 140 48.6
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 5.3e-13 80.5 125 40.8
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 1.9e-10 72.0 64 62.5
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 5.2e-08 63.9 53 56.6
MBI14_g34262_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 2.6e-07 61.6 53 58.5
MBI14_g14180_MAGBIO Magnolia biondii HOM05D000221 ORTHO05D006008 8.2e-06 56.6 45 55.6


User provided reference genes

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