Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 9.7e-208 726.9 449 100.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.4e-131 471.5 421 70.3
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 6.2e-130 468.4 419 71.4
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 3.9e-124 449.1 441 68.0
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.5e-115 419.9 335 70.7
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 2.1e-109 400.2 322 69.3
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.0e-108 397.9 319 71.2
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.0e-108 397.9 344 68.3
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.8e-108 397.1 314 71.7
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.0e-107 393.7 348 67.2
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.4e-107 391.7 342 67.3
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 2.8e-106 389.8 353 66.6
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 8.2e-106 388.3 431 64.3
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.1e-105 386.3 353 65.2
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 6.9e-105 385.2 357 66.7
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.5e-104 384.0 345 66.7
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 4.5e-104 382.5 306 73.5
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.9e-104 382.1 291 72.5
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 5.9e-104 382.1 278 74.8
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 1.0e-103 381.3 333 67.6
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.3e-103 380.9 306 73.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 1.7e-103 380.6 334 66.8
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 2.2e-103 380.2 413 58.6
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.2e-103 380.2 248 80.2
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.9e-103 379.8 426 61.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 2.9e-103 379.8 298 72.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 5.0e-103 379.0 369 64.8
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.1e-102 377.9 306 73.2
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.4e-102 377.5 256 77.7
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.5e-102 376.7 281 73.0
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 3.2e-102 376.3 262 77.9
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 5.5e-102 375.6 282 72.3
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.2e-101 374.4 342 65.5
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 1.6e-101 374.0 307 70.4
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 1.6e-101 374.0 337 66.2
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 6.1e-101 372.1 238 81.9
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 7.9e-101 371.7 302 69.5
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 1.4e-100 370.9 318 68.6
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 3.0e-100 369.8 247 78.5
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 6.7e-100 368.6 269 74.7
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 8.8e-100 368.2 340 66.2
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 1.5e-99 367.5 255 76.5
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 3.3e-99 366.3 255 76.1
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 4.4e-99 365.9 305 68.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 4.4e-99 365.9 255 75.7
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 9.7e-99 364.8 252 74.6
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 2.2e-98 363.6 290 70.3
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 4.8e-98 362.5 250 76.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 4.8e-98 362.5 285 71.6
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 8.2e-98 361.7 268 72.0
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 8.2e-98 361.7 268 72.0
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 1.4e-97 360.9 255 74.1
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 1.4e-97 360.9 255 74.1
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.4e-97 360.1 316 63.6
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 5.3e-97 359.0 280 71.4
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 1.2e-96 357.8 250 74.8
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.5e-96 357.5 250 76.4
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 2.6e-96 356.7 349 61.9
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 5.9e-96 355.5 308 66.2
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 1.0e-95 354.8 293 66.9
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.2e-95 353.6 256 73.8
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 2.9e-95 353.2 357 61.3
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 6.5e-95 352.1 256 73.4
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.1e-94 351.3 247 74.9
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.1e-94 351.3 317 64.4
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 1.9e-94 350.5 324 61.4
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.5e-94 350.1 314 62.4
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 2.5e-94 350.1 354 60.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 4.2e-94 349.4 315 63.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 5.5e-94 349.0 353 60.6
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 5.5e-94 349.0 317 62.5
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 9.4e-94 348.2 251 73.7
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 9.4e-94 348.2 251 73.7
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 1.6e-93 347.4 276 69.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 3.6e-93 346.3 253 74.7
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.0e-93 345.1 291 67.4
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.0e-92 344.7 338 61.2
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 3.0e-92 343.2 291 66.3
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 3.0e-92 343.2 338 59.2
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 3.9e-92 342.8 299 66.9
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 9.7e-91 338.2 292 67.1
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 1.3e-90 337.8 247 72.9
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 2.6e-88 330.1 268 68.3
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.5e-88 329.3 353 58.1
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.0e-87 328.2 244 69.3
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-87 327.8 276 65.9
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 1.3e-87 327.8 347 56.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 2.9e-87 326.6 342 58.5
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 5.0e-87 325.9 255 68.6
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 5.0e-87 325.9 245 68.6
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 5.5e-86 322.4 255 70.6
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.6e-85 319.7 264 68.2
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 4.7e-85 319.3 318 57.9
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 6.1e-85 318.9 332 60.2
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.4e-84 317.8 285 62.8
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.8e-84 317.4 325 60.6
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.0e-84 316.2 300 61.3
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 3.4e-83 313.2 353 57.2
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 5.7e-83 312.4 320 57.5
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 9.7e-83 311.6 300 61.0
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-82 311.2 345 54.5
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 1.7e-82 310.8 345 57.7
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.7e-82 310.8 334 56.3
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 4.8e-82 309.3 331 57.1
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 1.8e-81 307.4 319 59.6
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 2.4e-81 307.0 286 61.9
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.4e-81 307.0 296 60.5
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 9.1e-81 305.1 343 54.5
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 4.5e-80 302.8 342 54.1
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 9.4e-78 295.0 350 52.9
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 9.4e-78 295.0 335 54.6
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 6.8e-76 288.9 212 72.2
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 2.6e-75 287.0 327 54.4
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 9.8e-75 285.0 327 51.1
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 9.1e-73 278.5 301 57.5
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 4.5e-72 276.2 304 54.9
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 3.7e-66 256.5 268 54.1
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.1e-62 245.0 298 48.3
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 1.9e-49 201.1 296 43.9
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 2.1e-45 187.6 248 45.6
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 6.2e-45 186.0 277 40.1
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 4.9e-42 176.4 110 80.9
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 1.4e-41 174.9 314 38.2
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.5e-38 164.9 342 36.3
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 4.3e-38 163.3 298 40.3
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 6.2e-37 159.5 88 83.0
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.4e-33 148.3 246 37.0
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.1e-32 144.4 238 42.0
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 1.7e-31 141.4 207 40.6
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.9e-31 140.2 177 50.3
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 1.4e-28 131.7 226 39.4
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 4.9e-26 123.2 215 32.1
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 7.1e-25 119.4 301 31.2
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 2.1e-24 117.9 182 49.5
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 3.9e-23 113.6 227 31.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 4.3e-22 110.2 159 43.4
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 7.3e-22 109.4 216 30.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 8.1e-21 105.9 219 34.7
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 5.8e-19 99.8 161 47.2
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 3.3e-14 84.0 241 32.4
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 6.2e-13 79.7 156 42.3
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 2.4e-12 77.8 104 45.2
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 5.3e-12 76.6 210 30.0
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 1.0e-10 72.4 108 43.5
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 1.0e-10 72.4 104 45.2
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 6.5e-10 69.7 177 31.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 2.5e-09 67.8 48 54.2
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 1.6e-08 65.1 54 50.0
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.6e-08 65.1 197 31.0
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 3.5e-08 63.9 129 41.1


User provided reference genes

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