Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 2.7e-247 858.2 427 100.0
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 3.3e-112 409.5 335 62.7
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 3.1e-110 402.9 317 64.4
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 7.5e-109 398.3 420 52.4
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 1.7e-108 397.1 305 65.2
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.4e-107 394.0 407 54.1
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.4e-107 393.3 322 60.6
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 4.1e-107 392.5 332 59.0
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 5.4e-107 392.1 428 53.0
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.6e-106 390.6 428 52.8
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 2.1e-106 390.2 302 65.2
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 4.6e-106 389.0 312 64.4
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 4.6e-106 389.0 332 58.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 6.0e-106 388.7 308 64.6
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 6.0e-106 388.7 310 62.9
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 6.6e-105 385.2 310 64.2
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 1.9e-104 383.6 304 62.8
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 3.3e-104 382.9 303 65.0
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.6e-103 380.6 433 50.3
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 3.6e-103 379.4 425 50.6
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 6.8e-102 375.2 332 59.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 3.4e-101 372.9 433 49.9
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 4.4e-101 372.5 319 60.5
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 7.5e-101 371.7 317 60.6
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 1.7e-100 370.5 351 54.4
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 8.3e-100 368.2 320 58.4
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 3.2e-99 366.3 420 50.2
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 4.1e-99 365.9 310 59.7
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 1.2e-98 364.4 321 59.2
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 2.7e-98 363.2 303 61.4
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 6.0e-98 362.1 317 57.7
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.0e-97 361.3 338 57.1
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 1.3e-97 360.9 329 59.0
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.3e-97 360.9 414 49.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 6.6e-97 358.6 324 58.3
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 8.6e-97 358.2 326 58.3
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 1.9e-96 357.1 321 60.1
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.6e-95 354.0 351 55.8
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 3.6e-95 352.8 412 48.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 6.2e-95 352.1 310 60.6
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 6.2e-95 352.1 309 58.9
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 6.2e-95 352.1 297 61.3
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.1e-94 351.3 319 58.0
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 3.1e-94 349.7 326 56.7
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 4.0e-94 349.4 325 56.0
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 5.2e-94 349.0 414 49.5
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 2.0e-93 347.1 312 62.2
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.7e-92 344.0 331 56.5
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 4.9e-92 342.4 224 75.4
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 4.9e-92 342.4 332 54.5
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 6.4e-92 342.0 413 47.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.4e-91 340.9 297 59.3
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-90 337.8 297 58.9
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 1.2e-90 337.8 297 58.9
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 3.5e-90 336.3 294 57.8
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 7.8e-90 335.1 295 58.6
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.0e-89 334.7 294 57.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.3e-89 334.3 295 58.6
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 3.0e-89 333.2 295 57.3
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 3.0e-89 333.2 332 52.4
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 6.6e-89 332.0 306 55.9
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 5.6e-88 328.9 401 48.4
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 7.3e-88 328.6 445 48.3
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 1.3e-87 327.8 304 58.2
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.1e-87 327.0 295 56.9
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.8e-87 326.6 340 52.9
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 8.4e-84 315.1 294 54.8
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.1e-83 312.0 296 55.1
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.3e-83 311.6 318 53.1
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 3.5e-82 309.7 275 58.5
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.7e-81 307.4 316 53.2
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 4.8e-79 299.3 304 52.0
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 2.2e-76 290.4 428 42.5
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 1.4e-75 287.7 217 67.7
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 9.3e-75 285.0 203 69.0
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 4.6e-74 282.7 319 51.4
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.0e-73 281.6 276 55.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.1e-73 279.3 332 47.6
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.7e-73 278.9 329 47.1
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 8.7e-73 278.5 280 53.9
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 2.5e-72 276.9 351 45.6
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.3e-71 274.6 318 49.1
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 8.1e-71 271.9 424 41.3
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 3.4e-69 266.5 322 50.6
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 1.4e-67 261.2 345 45.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.5e-67 260.4 199 67.3
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.2e-67 260.0 342 45.6
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 2.1e-66 257.3 441 41.3
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 7.9e-66 255.4 290 47.6
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 2.1e-63 247.3 210 59.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.0e-60 238.4 266 47.0
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 1.9e-59 234.2 298 45.0
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 6.1e-58 229.2 197 60.4
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 5.1e-57 226.1 346 39.6
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 4.3e-56 223.0 343 42.0
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 8.2e-55 218.8 201 58.2
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 9.0e-54 215.3 308 42.2
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 1.5e-53 214.5 313 41.2
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 5.0e-52 209.5 173 63.0
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 7.4e-48 195.7 274 39.4
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.8e-47 193.7 156 62.8
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 8.2e-47 192.2 567 29.1
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 1.2e-45 188.3 196 50.5
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 6.7e-41 172.6 233 44.6
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 5.7e-40 169.5 187 48.7
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.2e-37 161.8 289 37.0
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 3.2e-35 153.7 95 80.0
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.7e-34 150.6 136 56.6
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 8.8e-33 145.6 241 38.2
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 9.7e-32 142.1 317 32.8
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.7e-28 131.3 108 62.0
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 5.5e-27 126.3 305 31.8
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 5.2e-25 119.8 292 30.1
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.1e-22 112.1 83 62.7
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 4.1e-22 110.2 88 64.8
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 5.9e-21 106.3 93 58.1
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.7e-18 97.4 127 40.9
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.5e-16 91.7 74 59.5
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 2.6e-16 90.9 212 34.9
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.6e-13 81.6 87 50.6
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 3.8e-12 77.0 64 59.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 4.0e-09 67.0 60 51.7
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 8.9e-09 65.9 44 65.9
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 1.3e-07 62.0 62 53.2


User provided reference genes

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