Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 1.8e-81 305.8 153 100.0
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.9e-46 189.5 92 97.8
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 4.0e-44 181.8 100 89.0
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 8.8e-44 180.6 92 92.4
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 8.8e-44 180.6 93 91.4
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 1.5e-43 179.9 92 93.5
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.5e-43 179.9 92 92.4
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 2.0e-43 179.5 92 92.4
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.6e-43 179.1 92 92.4
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 3.4e-43 178.7 92 92.4
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 4.4e-43 178.3 92 92.4
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 5.7e-43 177.9 96 88.5
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 5.7e-43 177.9 96 88.5
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 7.5e-43 177.6 92 92.4
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 6.3e-42 174.5 92 91.3
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 6.3e-42 174.5 92 90.2
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 8.3e-42 174.1 115 77.4
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.1e-41 173.7 92 89.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-41 173.7 92 88.0
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 1.4e-41 173.3 92 90.2
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-41 172.9 92 89.1
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 1.8e-41 172.9 92 89.1
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 2.4e-41 172.6 92 89.1
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 2.4e-41 172.6 92 89.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 2.4e-41 172.6 95 86.3
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 2.4e-41 172.6 92 87.0
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.1e-41 172.2 92 89.1
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.1e-41 172.2 92 89.1
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 3.1e-41 172.2 92 89.1
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 3.1e-41 172.2 91 89.0
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 4.1e-41 171.8 92 90.2
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 5.4e-41 171.4 92 87.0
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 7.0e-41 171.0 92 87.0
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 9.2e-41 170.6 92 88.0
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 9.2e-41 170.6 92 88.0
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.6e-40 169.9 92 87.0
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 2.0e-40 169.5 92 87.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 2.0e-40 169.5 92 89.1
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 2.7e-40 169.1 92 87.0
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.5e-40 168.3 91 87.9
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.0e-39 167.2 92 83.7
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.0e-39 167.2 92 83.7
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 2.3e-39 166.0 88 88.6
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.3e-39 166.0 92 87.0
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.3e-39 166.0 92 84.8
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 2.9e-39 165.6 92 82.6
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 2.9e-39 165.6 92 82.6
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 2.9e-39 165.6 92 84.8
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 3.8e-39 165.2 92 82.6
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.8e-39 165.2 92 82.6
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 3.8e-39 165.2 92 85.9
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 5.0e-39 164.9 92 84.8
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 5.0e-39 164.9 92 81.5
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 6.6e-39 164.5 92 85.9
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.6e-39 164.5 91 84.6
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 6.6e-39 164.5 93 84.9
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 6.6e-39 164.5 92 85.9
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.6e-39 164.1 92 82.6
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.6e-39 164.1 92 81.5
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 8.6e-39 164.1 92 85.9
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 1.1e-38 163.7 92 85.9
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.5e-38 163.3 92 85.9
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.9e-38 162.9 92 83.7
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 1.9e-38 162.9 92 83.7
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 1.9e-38 162.9 92 80.4
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 2.5e-38 162.5 92 83.7
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 2.5e-38 162.5 94 85.1
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 3.3e-38 162.2 92 82.6
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.3e-38 162.2 91 84.6
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 4.3e-38 161.8 92 83.7
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 7.3e-38 161.0 92 82.6
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 1.2e-37 160.2 88 86.4
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.2e-37 160.2 92 82.6
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.2e-37 160.2 92 82.6
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.8e-37 159.1 86 87.2
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.8e-37 159.1 92 83.7
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.6e-37 158.7 92 81.5
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 3.6e-37 158.7 94 79.8
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 3.6e-37 158.7 94 79.8
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.7e-37 158.3 92 81.5
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 6.1e-37 157.9 88 86.4
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 6.1e-37 157.9 93 82.8
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.1e-37 157.9 92 79.3
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 6.1e-37 157.9 88 88.6
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.4e-36 156.8 92 79.3
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.8e-36 156.4 93 82.8
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.8e-36 156.4 93 82.8
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.3e-36 156.0 89 80.9
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.0e-36 155.6 93 81.7
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.0e-36 155.6 89 80.9
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 3.0e-36 155.6 86 84.9
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 5.2e-36 154.8 92 80.4
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 2.0e-35 152.9 94 76.6
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 2.0e-35 152.9 94 76.6
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.6e-35 152.5 122 69.7
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.6e-35 152.5 92 81.5
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 5.7e-35 151.4 89 79.8
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 7.5e-35 151.0 93 79.6
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.3e-34 150.2 120 66.7
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.7e-34 149.8 89 80.9
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.7e-34 149.8 89 80.9
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 1.7e-34 149.8 90 80.0
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.2e-34 149.4 86 82.6
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 2.9e-34 149.1 87 82.8
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.7e-34 148.7 89 77.5
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 3.7e-34 148.7 89 80.9
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 3.7e-34 148.7 89 80.9
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 3.7e-34 148.7 93 77.4
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 3.7e-34 148.7 93 77.4
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 4.9e-34 148.3 124 62.1
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 4.9e-34 148.3 93 77.4
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 4.9e-34 148.3 92 80.4
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 6.4e-34 147.9 93 77.4
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 6.4e-34 147.9 93 77.4
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 6.4e-34 147.9 93 77.4
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 6.4e-34 147.9 93 77.4
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 6.4e-34 147.9 93 77.4
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 6.4e-34 147.9 97 76.3
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.4e-33 146.7 86 80.2
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 1.8e-33 146.4 92 76.1
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 2.4e-33 146.0 82 84.1
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-33 145.2 78 87.2
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-33 145.2 78 87.2
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.1e-33 145.2 78 87.2
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 5.4e-33 144.8 87 80.5
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 1.6e-32 143.3 89 78.7
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 2.7e-32 142.5 87 74.7
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 4.6e-32 141.7 94 76.6
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.9e-31 138.7 71 93.0
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 6.6e-31 137.9 70 92.9
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 1.1e-30 137.1 76 84.2
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.1e-30 137.1 74 85.1
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.5e-30 136.7 70 91.4
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 1.5e-30 136.7 70 91.4
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.6e-30 134.8 87 77.0
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 9.5e-30 134.0 71 85.9
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.6e-29 133.3 89 73.0
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-29 132.9 115 59.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 4.7e-29 131.7 82 73.2
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 1.0e-28 130.6 71 88.7
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.4e-28 130.2 71 81.7
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.8e-27 124.8 86 73.3
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.3e-26 123.6 86 73.3
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.7e-26 122.1 92 64.1
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.4e-25 120.2 71 83.1
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 3.2e-25 119.0 76 78.9
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 3.0e-23 112.5 67 74.6
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 3.9e-23 112.1 91 67.0
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 4.3e-22 108.6 50 96.0
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 8.1e-21 104.4 81 63.0
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 8.1e-21 104.4 97 55.7
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.7e-18 96.7 90 53.3
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 2.2e-18 96.3 86 54.7
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.4e-17 91.7 49 87.8
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.1e-17 91.3 51 80.4
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.1e-17 91.3 51 80.4
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.1e-17 91.3 51 80.4
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.1e-17 91.3 51 80.4
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 9.2e-17 90.9 58 74.1
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.5e-16 89.0 49 83.7
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.6e-15 84.7 47 78.7
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.3e-14 82.4 49 77.6
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.6e-13 80.1 74 50.0
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 2.1e-13 79.7 43 86.0
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.1e-12 75.9 54 66.7
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 2.4e-09 66.2 56 55.4
TWI56G0038 Tripterygium wilfordii HOM05D004240 ORTHO05D413666 7.3e-06 54.7 26 92.3


User provided reference genes

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