Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p047634 Quercus lobata HOM05D003540 ORTHO05D004012 2.3e-31 138.3 71 100.0
CiPaw.01G047900 Carya illinoinensis HOM05D003540 ORTHO05D004012 6.0e-27 123.6 68 89.7
TWI74G0452 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 6.8e-23 110.2 68 76.5
COL.COLO4_27316 Corchorus olitorius HOM05D003540 ORTHO05D004012 2.0e-22 108.6 68 77.9
Thecc.01G093400 Theobroma cacao HOM05D003540 ORTHO05D004012 5.8e-22 107.1 68 76.5
Aqoxy6G00672 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 1.1e-20 102.8 67 70.1
Gohir.A11G205600 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.9e-20 102.1 68 72.1
Gorai.007G236000 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.9e-20 102.1 68 72.1
Gohir.D11G218000 Gossypium hirsutum HOM05D003540 ORTHO05D004012 3.2e-20 101.3 68 72.1
Actinidia29606 Actinidia chinensis HOM05D003540 ORTHO05D004012 4.1e-20 100.9 67 71.6
Aqoxy1G03155 Aquilegia oxysepala HOM05D003540 ORTHO05D004012 4.1e-20 100.9 67 68.7
CSS0040126 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 4.1e-20 100.9 67 71.6
Dinv42647 Davidia involucrata HOM05D003540 ORTHO05D004012 4.1e-20 100.9 68 69.1
TAR625G0842 Trochodendron aralioides HOM05D003540 ORTHO05D004012 9.2e-20 99.8 67 70.1
GSVIVG01003618001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.6e-19 99.0 68 70.6
TAR381G0359 Trochodendron aralioides HOM05D003540 ORTHO05D004012 2.1e-19 98.6 67 68.7
Nn1g08254 Nelumbo nucifera HOM05D003540 ORTHO05D004012 2.7e-19 98.2 67 68.7
Rhsim06G0075200 Rhododendron simsii HOM05D003540 ORTHO05D004012 2.7e-19 98.2 67 68.7
Prupe.1G526600 Prunus persica HOM05D003540 ORTHO05D004012 6.0e-19 97.1 67 70.1
Lsat_1_v5_gn_1_2480 Lactuca sativa HOM05D003540 ORTHO05D004012 7.8e-19 96.7 67 68.7
Potri.005G159600 Populus trichocarpa HOM05D003540 ORTHO05D004012 1.7e-18 95.5 67 68.7
Sed0022834 Sechium edule HOM05D003540 ORTHO05D004012 3.9e-18 94.4 65 67.7
AL7G41530 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 6.6e-18 93.6 67 65.7
AT4G14600 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 6.6e-18 93.6 67 65.7
Peaxi162Scf00725g00536 Petunia axillaris HOM05D003540 ORTHO05D004012 6.6e-18 93.6 67 65.7
CSS0047709 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 8.6e-18 93.2 67 67.2
GSVIVG01009122001 Vitis vinifera HOM05D003540 ORTHO05D004012 1.1e-17 92.8 67 65.7
Aa31LG5G21170 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.5e-17 92.4 67 64.2
Aa31LG6G11550 Aethionema arabicum HOM05D003540 ORTHO05D004012 1.5e-17 92.4 68 64.7
ECA234G0792 Erigeron canadensis HOM05D003540 ORTHO05D004012 1.5e-17 92.4 67 65.7
HanXRQChr02g0046851 Helianthus annuus HOM05D003540 ORTHO05D004012 1.5e-17 92.4 67 65.7
MBI02_g18294_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 1.5e-17 92.4 67 65.7
vmacro04682 Vaccinium macrocarpon HOM05D003540 ORTHO05D004012 1.5e-17 92.4 72 65.3
Carub.0001s2726 Capsella rubella HOM05D003540 ORTHO05D004012 1.9e-17 92.0 67 65.7
Migut.D01990 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.9e-17 92.0 71 63.4
Thhalv10009065m.g Eutrema salsugineum HOM05D003540 ORTHO05D004012 1.9e-17 92.0 67 64.2
HanXRQChr08g0226211 Helianthus annuus HOM05D003540 ORTHO05D004012 1.9e-17 92.0 67 64.2
Sabra05G0121300 Salix brachista HOM05D003540 ORTHO05D004012 1.9e-17 92.0 65 67.7
Sp1g25000 Schrenkiella parvula HOM05D003540 ORTHO05D004012 1.9e-17 92.0 67 64.2
AL1G42780 Arabidopsis lyrata HOM05D003540 ORTHO05D004012 2.5e-17 91.7 67 64.2
AT1G29060 Arabidopsis thaliana HOM05D003540 ORTHO05D004012 2.5e-17 91.7 67 64.2
A08p25340 Brassica napus HOM05D003540 ORTHO05D004012 2.5e-17 91.7 68 63.2
Eucgr.F00400 Eucalyptus grandis HOM05D003540 ORTHO05D004012 2.5e-17 91.7 65 66.2
MD15G1380400 Malus domestica HOM05D003540 ORTHO05D004012 2.5e-17 91.7 65 67.7
Potri.002G102400 Populus trichocarpa HOM05D003540 ORTHO05D004012 2.5e-17 91.7 67 65.7
CANSAT25G0001 Cannabis sativa HOM05D003540 ORTHO05D004012 3.3e-17 91.3 67 67.2
Peaxi162Scf00139g00825 Petunia axillaris HOM05D003540 ORTHO05D004012 3.3e-17 91.3 67 64.2
Sc23g0000530 Simmondsia chinensis HOM05D003540 ORTHO05D004012 3.3e-17 91.3 67 62.7
BcaC06g35396 Brassica carinata HOM05D003540 ORTHO05D004012 4.3e-17 90.9 67 62.7
BolC7t42159H Brassica oleracea HOM05D003540 ORTHO05D004012 4.3e-17 90.9 67 62.7
BraA07t28888Z Brassica rapa HOM05D003540 ORTHO05D004012 4.3e-17 90.9 67 62.7
AUR62027843 Chenopodium quinoa HOM05D003540 ORTHO05D004012 4.3e-17 90.9 68 64.7
Dinv44828 Davidia involucrata HOM05D003540 ORTHO05D004012 4.3e-17 90.9 67 64.2
Sed0006262 Sechium edule HOM05D003540 ORTHO05D004012 4.3e-17 90.9 67 65.7
HPP92_023309 Vanilla planifolia HOM05D003540 ORTHO05D004012 4.3e-17 90.9 74 62.2
BcaNung06434 Brassica carinata HOM05D003540 ORTHO05D004012 5.6e-17 90.5 67 62.7
BraA08t34486Z Brassica rapa HOM05D003540 ORTHO05D004012 5.6e-17 90.5 67 62.7
Solyc04g074940.4 Solanum lycopersicum HOM05D003540 ORTHO05D004012 5.6e-17 90.5 67 61.2
Sopen04g029890 Solanum pennellii HOM05D003540 ORTHO05D004012 5.6e-17 90.5 67 61.2
Cc10_g15500 Coffea canephora HOM05D003540 ORTHO05D004012 7.3e-17 90.1 67 62.7
ECA247G1419 Erigeron canadensis HOM05D003540 ORTHO05D004012 7.3e-17 90.1 67 64.2
Nitab4.5_0013778g0010 Nicotiana tabacum HOM05D003540 ORTHO05D004012 7.3e-17 90.1 68 60.3
THA.LOC104812634 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 7.3e-17 90.1 67 62.7
MSTRG.9688 Avicennia marina HOM05D003540 ORTHO05D004012 9.5e-17 89.7 71 63.4
BcaB03g13908 Brassica carinata HOM05D003540 ORTHO05D004012 9.5e-17 89.7 67 62.7
A07p10970 Brassica napus HOM05D003540 ORTHO05D004012 9.5e-17 89.7 67 62.7
AUR62019000 Chenopodium quinoa HOM05D003540 ORTHO05D004012 9.5e-17 89.7 67 64.2
Os07g0577900 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 9.5e-17 89.7 68 66.2
THA.LOC104820588 Tarenaya hassleriana HOM05D003540 ORTHO05D004012 9.5e-17 89.7 67 62.7
EL10Ac3g06094 Beta vulgaris HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 62.7
C03p75500 Brassica napus HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 61.2
BolC3t19806H Brassica oleracea HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 61.2
CDE05G3211 Ceratophyllum demersum HOM05D000364 ORTHO05D004012 1.2e-16 89.4 68 63.2
COL.COLO4_11964 Corchorus olitorius HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 64.2
Gohir.A06G032664 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 64.2
Gohir.D06G033200 Gossypium hirsutum HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 64.2
Gorai.010G036600 Gossypium raimondii HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 64.2
Nitab4.5_0000008g0680 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.2e-16 89.4 67 61.2
Oeu013165.1 Olea europaea HOM05D003540 ORTHO05D004012 1.2e-16 89.4 71 64.8
Oeu024713.1 Olea europaea HOM05D003540 ORTHO05D004012 1.2e-16 89.4 71 63.4
CDE05G3432 Ceratophyllum demersum HOM05D003540 ORTHO05D004012 1.6e-16 89.0 68 63.2
PGR031G1594 Punica granatum HOM05D003540 ORTHO05D004012 1.6e-16 89.0 67 61.2
PGSC0003DMG401002119 Solanum tuberosum HOM05D003540 ORTHO05D004012 1.6e-16 89.0 67 61.2
Hma1.2p1_0961F.1_g241695 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 2.1e-16 88.6 67 64.2
Hma1.2p1_0961F.1_g241710 Hydrangea macrophylla HOM05D003540 ORTHO05D004012 2.1e-16 88.6 67 64.2
Thecc.08G066000 Theobroma cacao HOM05D003540 ORTHO05D004012 2.1e-16 88.6 65 64.6
BcaNung06754 Brassica carinata HOM05D003540 ORTHO05D004012 2.8e-16 88.2 67 59.7
CiPaw.07G169400 Carya illinoinensis HOM05D003540 ORTHO05D004012 2.8e-16 88.2 67 64.2
Duzib093G0958 Durio zibethinus HOM05D003540 ORTHO05D004012 2.8e-16 88.2 67 62.7
CARHR028280 Cardamine hirsuta HOM05D003540 ORTHO05D004012 3.6e-16 87.8 67 61.2
Manes.18G062100 Manihot esculenta HOM05D003540 ORTHO05D004012 3.6e-16 87.8 67 65.7
Cpa.g.sc36.201 Carica papaya HOM05D003540 ORTHO05D004012 6.2e-16 87.0 67 62.7
Ciclev10002815m.g Citrus clementina HOM05D003540 ORTHO05D004012 6.2e-16 87.0 67 64.2
Zm00001eb325480 Zea mays HOM05D003540 ORTHO05D004012 6.2e-16 87.0 68 64.7
BcaB07g32485 Brassica carinata HOM05D003540 ORTHO05D004012 8.1e-16 86.7 67 59.7
CAN.G1538.2 Capsicum annuum HOM05D003540 ORTHO05D004012 8.1e-16 86.7 67 59.7
Haze_15046 Corylus avellana HOM05D003540 ORTHO05D004012 8.1e-16 86.7 126 46.0
MELO3C003542.2 Cucumis melo HOM05D003540 ORTHO05D004012 8.1e-16 86.7 67 62.7
MBI06_g18789_MAGBIO Magnolia biondii HOM05D003540 ORTHO05D004012 8.1e-16 86.7 65 63.1
CAN.G460.5 Capsicum annuum HOM05D003540 ORTHO05D004012 1.4e-15 85.9 67 59.7
Solyc02g063075.1 Solanum lycopersicum HOM05D003540 ORTHO05D004012 1.4e-15 85.9 67 59.7
Sopen02g014150 Solanum pennellii HOM05D003540 ORTHO05D004012 1.4e-15 85.9 67 59.7
PGSC0003DMG400024178 Solanum tuberosum HOM05D003540 ORTHO05D004012 1.4e-15 85.9 67 59.7
CsaV3_3G047800 Cucumis sativus L. HOM05D003540 ORTHO05D004012 1.8e-15 85.5 65 61.5
Duzib116G0544 Durio zibethinus HOM05D003540 ORTHO05D004012 1.8e-15 85.5 64 64.1
TWI12G0801 Tripterygium wilfordii HOM05D003540 ORTHO05D004012 1.8e-15 85.5 67 61.2
Atru.chr13.1061 Acer truncatum HOM05D003540 ORTHO05D004012 2.3e-15 85.1 68 60.3
Zm00001eb107620 Zea mays HOM05D003540 ORTHO05D004012 2.3e-15 85.1 68 64.7
Nitab4.5_0001984g0080 Nicotiana tabacum HOM05D003540 ORTHO05D004012 3.1e-15 84.7 67 58.2
SalBow6G2258 Salvia bowleyana HOM05D003540 ORTHO05D004012 4.0e-15 84.3 71 60.6
SalBow6G4055 Salvia bowleyana HOM05D003540 ORTHO05D004012 4.0e-15 84.3 71 60.6
arahy.Tifrunner.gnm1.ann1.QI1MS0 Arachis hypogaea HOM05D003540 ORTHO05D004012 5.2e-15 84.0 70 61.4
Duzib041G0585 Durio zibethinus HOM05D003540 ORTHO05D004012 5.2e-15 84.0 67 61.2
Sc01g0000960 Simmondsia chinensis HOM05D003540 ORTHO05D004012 5.2e-15 84.0 61 63.9
Rhsim07G0209200 Rhododendron simsii HOM05D003540 ORTHO05D004012 8.9e-15 83.2 67 62.7
arahy.Tifrunner.gnm1.ann1.Q67T8J Arachis hypogaea HOM05D003540 ORTHO05D004012 1.2e-14 82.8 70 60.0
MSTRG.11484 Avicennia marina HOM05D003540 ORTHO05D004012 1.2e-14 82.8 71 63.4
Ah.05g170560 Amaranthus hybridus HOM05D003540 ORTHO05D004012 2.0e-14 82.0 67 58.2
BcaC05g26921 Brassica carinata HOM05D003540 ORTHO05D004012 2.0e-14 82.0 67 56.7
C05p27740 Brassica napus HOM05D003540 ORTHO05D004012 2.0e-14 82.0 67 56.7
BolC5t31494H Brassica oleracea HOM05D003540 ORTHO05D004012 2.0e-14 82.0 67 56.7
SalBow7G2649 Salvia bowleyana HOM05D003540 ORTHO05D004012 2.0e-14 82.0 71 63.4
ATR0736G080 Amborella trichopoda HOM05D003540 ORTHO05D004012 3.4e-14 81.3 67 59.7
SGA_v2.0_scaffold37G14731 Striga asiatica HOM05D003540 ORTHO05D004012 4.4e-14 80.9 71 63.4
AUR62002400 Chenopodium quinoa HOM05D003540 ORTHO05D004012 5.8e-14 80.5 68 58.8
Lj1g0000615 Lotus japonicus HOM05D003540 ORTHO05D004012 5.8e-14 80.5 67 62.7
Lalb_Chr10g0102641 Lupinus albus HOM05D003540 ORTHO05D004012 5.8e-14 80.5 64 65.6
QL09p016915 Quercus lobata HOM05D003540 ORTHO05D004012 9.9e-14 79.7 67 58.2
SGA_v2.0_scaffold5G02749 Striga asiatica HOM05D003540 ORTHO05D004012 9.9e-14 79.7 71 62.0
ClCG11G014400 Citrullus lanatus HOM05D003540 ORTHO05D004012 1.3e-13 79.3 79 54.4
Migut.O00140 Erythranthe guttata HOM05D003540 ORTHO05D004012 1.3e-13 79.3 71 63.4
CSS0040517 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 1.7e-13 79.0 65 61.5
DCAR_001735 Daucus carota HOM05D003540 ORTHO05D004012 1.7e-13 79.0 65 60.0
Manes.02G147700 Manihot esculenta HOM05D003540 ORTHO05D004012 1.7e-13 79.0 64 60.9
SalBow6G0357 Salvia bowleyana HOM05D003540 ORTHO05D004012 1.7e-13 79.0 71 60.6
Cfa013710 Carpinus fangiana HOM05D003540 ORTHO05D004012 2.2e-13 78.6 63 57.1
Haze_22354 Corylus avellana HOM05D003540 ORTHO05D004012 2.2e-13 78.6 63 57.1
Lsat_1_v5_gn_6_105381 Lactuca sativa HOM05D003540 ORTHO05D004012 2.9e-13 78.2 61 60.7
Nn1g05484 Nelumbo nucifera HOM05D003540 ORTHO05D004012 2.9e-13 78.2 60 58.3
Phvul.008G178700 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 2.9e-13 78.2 67 59.7
SEGI_15699 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 2.9e-13 78.2 69 56.5
Atru.chr3.3368 Acer truncatum HOM05D003185 ORTHO05D007711 4.9e-13 77.4 69 53.6
Ca_05384_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 4.9e-13 77.4 69 56.5
Medtr5g065550 Medicago truncatula HOM05D003540 ORTHO05D004012 4.9e-13 77.4 67 59.7
Medtr3g099773 Medicago truncatula HOM05D003540 ORTHO05D004012 6.4e-13 77.0 68 61.8
Lj1g0025059 Lotus japonicus HOM05D003540 ORTHO05D004012 8.3e-13 76.6 64 60.9
Psat2g066800 Pisum sativum HOM05D003540 ORTHO05D004012 8.3e-13 76.6 67 59.7
TPR.G6376 Trifolium pratense HOM05D003540 ORTHO05D004012 8.3e-13 76.6 68 61.8
Glyma.02G211500 Glycine max HOM05D003540 ORTHO05D004012 1.1e-12 76.3 67 59.7
Glyma.14G179100 Glycine max HOM05D003540 ORTHO05D004012 1.1e-12 76.3 67 59.7
arahy.Tifrunner.gnm1.ann1.41SNZJ Arachis hypogaea HOM05D003540 ORTHO05D004012 1.9e-12 75.5 65 58.5
arahy.Tifrunner.gnm1.ann1.NU78SD Arachis hypogaea HOM05D003540 ORTHO05D004012 1.9e-12 75.5 65 58.5
VMungo0647G0300 Vigna mungo HOM05D003540 ORTHO05D004012 2.4e-12 75.1 67 59.7
FAN13G2229 Fragaria x ananassa HOM05D003540 ORTHO05D004012 3.2e-12 74.7 51 68.6
Glyma.04G097000 Glycine max HOM05D003540 ORTHO05D004012 3.2e-12 74.7 64 60.9
Ca_16024_v3 Cicer arietinum L. HOM05D003540 ORTHO05D004012 5.4e-12 73.9 69 59.4
FvH4_5g35960 Fragaria vesca HOM05D003540 ORTHO05D004012 7.1e-12 73.6 52 67.3
FAN18G2789 Fragaria x ananassa HOM05D003540 ORTHO05D004012 7.1e-12 73.6 52 67.3
RcHm_v2.0_Chr7g0237701 Rosa chinensis HOM05D003540 ORTHO05D004012 7.1e-12 73.6 52 67.3
SEGI_39968 Sequoiadendron giganteum HOM05D003540 ORTHO05D004012 7.1e-12 73.6 65 55.4
Glyma.06G098800 Glycine max HOM05D003540 ORTHO05D004012 9.2e-12 73.2 64 59.4
MD08G1191600 Malus domestica HOM05D003540 ORTHO05D004012 1.2e-11 72.8 68 55.9
FAN08G1899 Fragaria x ananassa HOM05D003540 ORTHO05D004012 2.7e-11 71.6 51 66.7
Psat5g050000 Pisum sativum HOM05D003540 ORTHO05D004012 3.5e-11 71.2 68 57.4
AagrBONN_evm.TU.Sc2ySwM_228.2385 Anthoceros agrestis HOM05D003540 ORTHO05D004012 6.0e-11 70.5 63 50.8
Oeu023447.1 Olea europaea HOM05D003540 ORTHO05D004012 6.0e-11 70.5 53 64.2
Lalb_Chr23g0270301 Lupinus albus HOM05D003540 ORTHO05D004012 1.0e-10 69.7 69 52.2
Os03g0187700 Oryza sativa ssp. japonica HOM05D003540 ORTHO05D004012 1.0e-10 69.7 66 53.0
Phvul.009G034800 Phaseolus vulgaris HOM05D003540 ORTHO05D004012 3.9e-10 67.8 61 59.0
CSS0021893 Camellia sinensis var. sinensis HOM05D003540 ORTHO05D004012 6.6e-10 67.0 64 50.0
Nitab4.5_0007681g0020 Nicotiana tabacum HOM05D003540 ORTHO05D004012 1.5e-09 65.9 48 60.4
AagrBONN_evm.TU.Sc2ySwM_228.2961 Anthoceros agrestis HOM05D003540 ORTHO05D004012 1.9e-09 65.5 60 60.0
PSO675G6040 Papaver somniferum HOM05D003540 ORTHO05D004012 2.5e-09 65.1 51 58.8
SMO141G0171 Selaginella moellendorffii HOM05D003540 ORTHO05D004012 7.3e-09 63.5 49 61.2
Manes.02G214300 Manihot esculenta HOM05D003636 ORTHO05D005160 1.2e-08 62.8 50 60.0
Lalb_Chr23g0270201 Lupinus albus HOM05D003540 ORTHO05D004012 4.7e-08 60.8 63 50.8
Mapoly0006s0109 Marchantia polymorpha HOM05D003540 ORTHO05D004012 8.1e-08 60.1 62 50.0
Hund16878 Selenicereus undatus HOM05D003540 ORTHO05D004012 1.1e-07 59.7 86 41.9
Pp3c6_21020 Physcomitrium patens HOM05D003540 ORTHO05D004012 1.8e-07 58.9 53 58.5
Sabra17G0067100 Salix brachista HOM05D003540 ORTHO05D004012 2.4e-07 58.5 47 55.3
Pp3c7_10130 Physcomitrium patens HOM05D003540 ORTHO05D004012 1.2e-06 56.2 51 56.9
Cc04_g11820 Coffea canephora HOM05D003540 ORTHO05D004012 7.6e-06 53.5 67 46.3


User provided reference genes

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