Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 4.3e-62 241.1 118 100.0
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 2.0e-35 152.5 115 68.7
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 1.9e-33 146.0 121 68.6
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 6.0e-32 141.0 123 65.9
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 3.0e-31 138.7 120 65.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 4.3e-30 134.8 129 59.7
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.2e-29 133.3 131 58.8
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 3.1e-28 128.6 117 59.0
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 4.9e-26 121.3 120 59.2
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 5.4e-25 117.9 124 52.4
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 5.4e-25 117.9 109 60.6
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 5.4e-25 117.9 126 53.2
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 9.3e-25 117.1 129 54.3
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 9.3e-25 117.1 109 60.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 1.2e-24 116.7 124 54.0
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 1.6e-24 116.3 104 61.5
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 1.6e-24 116.3 131 54.2
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.6e-24 116.3 124 54.8
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.5e-24 115.2 139 50.4
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.5e-24 115.2 126 57.1
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 3.5e-24 115.2 121 54.5
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 3.5e-24 115.2 118 55.1
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 7.8e-24 114.0 117 54.7
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 1.3e-23 113.2 117 53.8
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-23 112.5 128 52.3
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.3e-23 112.5 134 53.0
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.3e-23 112.5 134 53.0
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 3.9e-23 111.7 117 55.6
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 5.1e-23 111.3 130 51.5
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 5.1e-23 111.3 119 50.4
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 6.6e-23 110.9 125 52.8
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.7e-23 110.5 134 52.2
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.1e-22 110.2 125 50.4
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.9e-22 109.4 119 52.9
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 2.5e-22 109.0 122 52.5
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 4.3e-22 108.2 117 54.7
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 5.6e-22 107.8 121 51.2
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 5.6e-22 107.8 120 50.8
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 9.6e-22 107.1 123 50.4
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 9.6e-22 107.1 122 51.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 1.3e-21 106.7 121 50.4
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 2.8e-21 105.5 130 49.2
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.8e-21 105.5 127 49.6
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.8e-21 105.5 125 48.8
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.6e-21 105.1 125 50.4
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 3.6e-21 105.1 118 50.0
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 4.8e-21 104.8 119 51.3
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 6.2e-21 104.4 122 53.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.1e-20 103.6 117 52.1
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 1.4e-20 103.2 117 53.0
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 1.8e-20 102.8 122 50.8
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.4e-20 102.4 125 48.8
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.0e-20 101.7 125 48.8
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 4.0e-20 101.7 108 59.3
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 4.0e-20 101.7 123 50.4
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 5.3e-20 101.3 125 50.4
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.9e-20 100.9 125 48.8
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 6.9e-20 100.9 125 47.2
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 6.9e-20 100.9 123 50.4
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 6.9e-20 100.9 122 49.2
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 2.0e-19 99.4 122 50.0
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 2.0e-19 99.4 124 48.4
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 2.6e-19 99.0 127 46.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.6e-19 99.0 118 50.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 3.4e-19 98.6 126 46.8
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 3.4e-19 98.6 126 46.8
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 3.4e-19 98.6 126 46.8
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 3.4e-19 98.6 123 49.6
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.4e-19 98.6 126 49.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.3e-18 96.7 133 45.1
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 1.7e-18 96.3 130 44.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 2.2e-18 95.9 135 46.7
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.9e-18 95.5 121 48.8
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.9e-18 95.5 130 46.9
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 2.9e-18 95.5 108 50.9
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 4.9e-18 94.7 124 46.0
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 4.9e-18 94.7 124 46.8
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 4.9e-18 94.7 113 48.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 6.4e-18 94.4 121 50.4
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 6.4e-18 94.4 136 50.0
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 1.1e-17 93.6 114 49.1
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-17 93.2 123 46.3
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-17 93.2 124 44.4
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.4e-17 93.2 124 44.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 1.9e-17 92.8 124 46.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.9e-17 92.8 112 51.8
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 1.9e-17 92.8 121 43.8
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-17 92.4 122 45.9
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-17 92.4 122 45.9
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 2.4e-17 92.4 130 43.1
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.2e-17 92.0 112 50.9
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 4.2e-17 91.7 124 46.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.2e-17 91.7 124 46.8
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 5.4e-17 91.3 125 43.2
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 5.4e-17 91.3 127 43.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 5.4e-17 91.3 126 42.9
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-16 90.1 113 47.8
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-16 90.1 111 49.5
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.6e-16 89.7 125 52.0
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.1e-16 89.4 125 47.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 2.1e-16 89.4 98 52.0
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.7e-16 89.0 110 52.7
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.5e-16 88.6 125 47.2
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 3.5e-16 88.6 128 43.8
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.5e-16 88.6 123 47.2
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 3.5e-16 88.6 114 50.0
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.6e-16 88.2 124 47.6
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.6e-16 88.2 114 43.9
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 4.6e-16 88.2 113 48.7
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.0e-16 87.8 124 47.6
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 1.8e-15 86.3 110 50.9
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-15 85.9 125 44.8
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-15 85.9 125 44.8
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-15 85.9 125 44.8
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-15 85.9 125 44.8
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.3e-15 85.9 125 45.6
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 3.0e-15 85.5 125 44.0
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 3.9e-15 85.1 125 44.8
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 3.9e-15 85.1 125 44.8
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.9e-15 85.1 112 48.2
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 5.1e-15 84.7 116 44.0
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 5.1e-15 84.7 119 45.4
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 6.7e-15 84.3 125 44.0
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-15 84.3 125 44.8
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 6.7e-15 84.3 125 44.8
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 6.7e-15 84.3 118 47.5
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 8.7e-15 84.0 123 44.7
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.7e-15 84.0 118 44.9
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 8.7e-15 84.0 112 48.2
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.1e-14 83.6 125 44.0
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.5e-14 83.2 121 44.6
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 44.0
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 44.0
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 44.0
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.5e-14 83.2 115 46.1
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-14 83.2 125 44.0
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 1.9e-14 82.8 125 44.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.9e-14 82.8 124 45.2
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 2.5e-14 82.4 126 42.1
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 2.5e-14 82.4 126 42.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.5e-14 82.4 111 45.9
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 2.5e-14 82.4 110 45.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 2.5e-14 82.4 125 43.2
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 3.3e-14 82.0 125 44.0
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-14 81.3 125 43.2
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.6e-14 81.3 125 44.0
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 5.6e-14 81.3 133 41.4
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.6e-14 81.3 125 44.0
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 5.6e-14 81.3 125 43.2
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.3e-13 80.1 125 42.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.6e-13 79.7 118 44.9
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.8e-13 79.0 125 45.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-13 78.6 123 40.7
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 3.7e-13 78.6 130 44.6
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.7e-13 78.6 93 48.4
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 6.2e-13 77.8 157 35.7
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.1e-12 75.5 100 44.0
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 6.9e-12 74.3 107 46.7
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-11 73.6 115 41.7
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.2e-11 73.6 115 41.7
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.2e-11 73.6 115 41.7
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.5e-11 73.2 125 39.2
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.0e-11 72.8 127 38.6
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 2.0e-11 72.8 108 45.4
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 1.3e-10 70.1 110 43.6
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-10 68.9 128 40.6
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.9e-10 68.9 128 40.6
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.9e-10 68.9 128 40.6
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 2.9e-10 68.9 119 41.2
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 8.4e-10 67.4 90 51.1
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.1e-09 67.0 84 48.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 1.1e-09 67.0 54 57.4
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-09 66.6 150 34.0
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.4e-09 65.9 123 37.4
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 4.2e-09 65.1 129 40.3
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 9.3e-09 63.9 191 29.3
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 1.2e-08 63.5 123 33.3
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.7e-08 62.4 106 37.7
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.5e-08 62.0 53 54.7
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 4.6e-08 61.6 106 41.5
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-07 60.5 155 32.3
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 6.7e-07 57.8 107 35.5
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.1e-06 57.0 40 57.5
SGA_v2.0_scaffold51G18826 Striga asiatica HOM05D003805 ORTHO05D004300 1.9e-06 56.2 122 34.4
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 1.9e-06 56.2 49 51.0


User provided reference genes

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