Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 2.2e-108 395.6 192 100.0
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 1.4e-102 376.3 192 93.2
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 3.1e-102 375.2 192 92.7
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 5.2e-102 374.4 192 92.2
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 2.6e-101 372.1 192 91.7
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 2.6e-101 372.1 192 93.2
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 3.4e-101 371.7 192 91.7
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 4.4e-101 371.3 192 93.2
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 4.4e-101 371.3 192 93.2
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 9.9e-101 370.2 192 91.1
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 2.2e-100 369.0 192 93.2
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 8.4e-100 367.1 192 90.1
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 8.4e-100 367.1 192 91.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 8.4e-100 367.1 192 90.6
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.9e-99 365.9 192 90.6
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.2e-99 365.2 192 90.6
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 5.4e-99 364.4 192 89.1
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 5.4e-99 364.4 192 89.1
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 7.1e-99 364.0 192 91.1
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 2.1e-98 362.5 192 89.1
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 2.1e-98 362.5 192 88.5
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 2.7e-98 362.1 192 88.5
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 4.6e-98 361.3 192 89.1
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 6.0e-98 360.9 189 89.4
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 1.3e-97 359.8 193 89.6
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.7e-97 359.4 191 89.5
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 2.3e-97 359.0 192 88.5
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 2.3e-97 359.0 192 88.0
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 3.0e-97 358.6 189 88.9
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 3.9e-97 358.2 218 80.3
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 6.6e-97 357.5 192 89.6
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 1.1e-96 356.7 189 90.5
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 1.1e-96 356.7 192 88.5
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 1.5e-96 356.3 192 89.1
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 3.3e-96 355.1 189 88.9
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 87.6
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 4.3e-96 354.8 192 86.5
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 5.6e-96 354.4 192 86.5
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 5.6e-96 354.4 192 88.0
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 7.3e-96 354.0 192 85.9
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 7.3e-96 354.0 192 88.0
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.6e-95 352.8 189 88.4
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 1.6e-95 352.8 189 88.4
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 2.1e-95 352.4 192 86.5
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 6.2e-95 350.9 192 87.5
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.1e-94 350.1 192 85.9
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.1e-94 348.6 192 85.9
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 3.1e-94 348.6 192 85.9
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 5.2e-94 347.8 192 84.9
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 5.2e-94 347.8 192 84.9
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 5.2e-94 347.8 192 84.9
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 5.2e-94 347.8 196 85.2
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 6.9e-94 347.4 192 84.9
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 1.2e-93 346.7 192 84.4
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 1.2e-93 346.7 187 87.7
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 1.2e-93 346.7 187 87.7
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.5e-93 346.3 187 86.1
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 1.5e-93 346.3 187 86.1
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 2.0e-93 345.9 187 87.7
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 2.6e-93 345.5 187 87.2
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 3.4e-93 345.1 192 83.9
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 4.4e-93 344.7 192 85.9
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 7.6e-93 344.0 192 83.9
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 7.6e-93 344.0 192 83.9
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 1.3e-92 343.2 192 84.4
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.3e-92 343.2 189 86.8
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 1.7e-92 342.8 192 84.9
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 2.9e-92 342.0 189 86.8
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 4.9e-92 341.3 192 83.9
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 8.4e-92 340.5 187 86.1
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 1.1e-91 340.1 189 84.7
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 1.9e-91 339.3 192 84.9
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 7.1e-91 337.4 192 82.8
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 7.1e-91 337.4 231 73.2
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 9.3e-91 337.0 192 82.3
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.6e-90 336.3 182 87.4
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.6e-90 334.7 209 78.5
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 6.0e-90 334.3 192 82.3
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 7.8e-90 334.0 189 84.7
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 3.0e-89 332.0 192 82.8
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 3.0e-89 332.0 192 82.8
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 7.3e-88 327.4 246 69.1
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 1.3e-87 326.6 192 81.2
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 8.1e-87 323.9 176 85.2
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 4.0e-86 321.6 199 76.4
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 6.9e-86 320.9 198 78.8
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 1.5e-85 319.7 170 88.8
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 4.9e-84 314.7 163 92.0
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 8.4e-84 313.9 192 78.6
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 4.2e-83 311.6 163 87.7
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.4e-83 311.2 170 86.5
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 2.7e-82 308.9 172 86.6
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 3.5e-82 308.5 176 80.7
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 7.9e-82 307.4 187 81.8
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 1.9e-80 302.8 159 89.9
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 3.3e-80 302.0 167 86.8
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 3.7e-79 298.5 188 74.5
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 2.7e-74 282.3 195 71.8
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 1.5e-72 276.6 157 86.6
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.9e-72 276.2 158 86.1
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.1e-70 270.4 156 84.6
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.3e-68 263.5 133 94.7
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 2.9e-68 262.3 139 88.5
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 7.9e-66 254.2 194 66.5
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.8e-65 253.1 226 61.5
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 6.3e-63 244.6 169 67.5
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 1.2e-61 240.4 163 71.2
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 8.5e-60 234.2 133 85.7
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 4.2e-59 231.9 169 63.9
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 1.6e-58 229.9 169 63.9
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 3.9e-57 225.3 187 63.1
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 3.3e-56 222.2 191 57.1
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.2e-55 217.6 166 66.9
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 1.0e-52 210.7 177 56.5
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 3.8e-52 208.8 111 87.4
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 5.1e-49 198.4 165 58.2
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 2.2e-44 183.0 110 75.5
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 5.5e-43 178.3 142 55.6
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 6.3e-39 164.9 112 65.2
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 7.0e-38 161.4 143 51.0
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 4.4e-32 142.1 167 49.7
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 1.3e-31 140.6 135 56.3
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 8.5e-28 127.9 130 56.9
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 5.5e-27 125.2 135 51.1
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 1.0e-25 120.9 126 50.8
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.6e-24 116.3 219 40.6
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.1e-22 109.0 70 72.9
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.0e-22 108.2 123 52.0
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.7e-20 103.6 130 46.2
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-17 94.0 53 86.8
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 2.6e-16 89.7 50 86.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 8.3e-15 84.7 57 66.7
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 3.1e-14 82.8 56 64.3
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 2.3e-09 66.6 33 84.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.0e-09 65.9 102 40.2
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 1.9e-06 57.0 34 82.4


User provided reference genes

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