Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 4.5e-280 967.2 469 100.0
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 1.2e-211 740.0 537 73.6
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.7e-199 699.5 490 72.2
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 2.2e-194 682.6 494 71.1
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 3.8e-186 655.2 445 72.6
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 4.9e-186 654.8 489 66.9
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 4.6e-184 648.3 489 66.5
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 4.3e-182 641.7 498 65.3
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.8e-180 636.3 486 63.6
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 6.9e-180 634.4 486 63.2
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 1.2e-179 633.6 490 63.3
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 1.5e-179 633.3 490 64.7
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.6e-179 632.5 486 63.6
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.4e-179 632.1 460 68.3
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 4.4e-179 631.7 493 64.1
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 4.9e-178 628.2 455 67.3
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 5.4e-177 624.8 492 62.4
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 1.2e-176 623.6 506 62.8
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 1.6e-176 623.2 530 60.8
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 1.0e-175 620.5 489 64.6
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.0e-175 620.5 488 64.5
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 3.0e-175 619.0 498 63.7
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.9e-175 618.6 525 58.5
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 1.5e-174 616.7 524 58.6
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 2.5e-174 615.9 525 58.9
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 2.5e-174 615.9 410 73.2
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 3.3e-174 615.5 489 61.6
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.6e-174 614.8 489 62.0
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 5.6e-174 614.8 525 59.2
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 1.3e-173 613.6 489 62.2
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 3.6e-173 612.1 491 61.9
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 1.1e-172 610.5 499 62.1
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.1e-172 609.0 492 63.2
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 4.0e-172 608.6 489 61.1
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 5.3e-172 608.2 524 57.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 9.0e-172 607.4 493 60.6
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 3.4e-171 605.5 491 61.1
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 3.8e-170 602.1 491 60.9
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 3.8e-170 602.1 489 62.6
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 6.4e-170 601.3 491 60.9
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 6.4e-170 601.3 525 57.0
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 1.4e-169 600.1 498 60.6
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 2.1e-168 596.3 494 61.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 2.1e-168 596.3 488 62.3
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 2.7e-168 595.9 473 63.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 1.0e-167 594.0 470 63.8
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 1.8e-167 593.2 470 64.0
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 2.3e-167 592.8 473 63.4
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 3.9e-167 592.0 483 61.7
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 1.3e-165 587.0 489 60.7
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 1.3e-165 587.0 507 59.0
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 2.4e-164 582.8 524 58.8
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 3.1e-164 582.4 489 60.7
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 9.0e-164 580.9 488 60.0
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 2.5e-161 572.8 512 56.8
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 2.5e-161 572.8 488 59.2
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 4.2e-161 572.0 457 62.6
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 1.6e-160 570.1 488 59.0
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 7.9e-160 567.8 478 60.0
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 1.0e-159 567.4 495 59.0
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 3.0e-159 565.8 488 58.6
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 3.3e-158 562.4 488 58.6
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 2.1e-157 559.7 488 58.4
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 8.2e-157 557.8 486 58.4
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 3.1e-156 555.8 489 59.5
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.2e-155 553.9 528 54.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 3.4e-155 552.4 488 58.0
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 4.5e-155 552.0 489 59.3
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 2.2e-154 549.7 468 59.2
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 6.5e-154 548.1 488 57.8
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 6.5e-154 548.1 488 57.8
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 2.5e-153 546.2 488 57.6
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 5.5e-153 545.0 488 58.8
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.5e-152 542.3 482 56.0
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 5.7e-150 535.0 480 57.5
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 2.2e-149 533.1 487 54.8
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 3.1e-148 529.3 488 53.7
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 1.2e-147 527.3 490 53.3
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 1.9e-145 520.0 428 61.2
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 2.1e-144 516.5 487 55.2
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.1e-144 516.5 414 67.9
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 6.1e-144 515.0 482 55.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 6.7e-143 511.5 468 59.2
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 2.5e-142 509.6 575 48.3
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 5.7e-142 508.4 483 53.8
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 5.7e-142 508.4 483 53.8
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.1e-137 494.2 473 54.8
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 1.4e-137 493.8 486 53.1
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 2.5e-137 493.0 484 53.1
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 2.7e-136 489.6 488 52.9
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 7.9e-136 488.0 482 52.3
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 4.8e-133 478.8 480 52.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 1.5e-131 473.8 535 50.5
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.7e-130 470.3 527 48.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 2.2e-130 469.9 527 48.6
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 2.0e-126 456.8 433 55.4
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 2.6e-126 456.4 489 50.3
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 1.7e-125 453.8 497 46.7
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.8e-125 453.0 496 46.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 4.2e-121 439.1 475 51.4
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.7e-106 390.6 493 44.2
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.9e-97 360.5 482 40.9
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.0e-95 354.8 245 70.2
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 5.2e-95 352.4 548 36.7
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.9e-93 346.7 496 38.7
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-88 331.3 401 48.6
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 2.4e-84 317.0 452 43.1
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 8.9e-79 298.5 509 36.3
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.2e-76 290.0 193 70.5
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 5.1e-74 282.7 352 48.3
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 1.4e-71 274.6 193 65.8
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 8.9e-71 271.9 345 42.3
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 1.9e-65 254.2 171 71.9
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 1.3e-64 251.5 474 33.1
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 8.4e-61 238.8 307 44.3
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 5.6e-57 226.1 446 34.3
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 7.3e-57 225.7 193 61.1
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-55 221.9 158 65.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 3.5e-51 206.8 136 72.1
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 5.1e-50 203.0 203 49.8
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.4e-47 194.9 146 63.0
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 4.2e-36 156.8 581 26.7
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 5.1e-34 149.8 128 52.3
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 9.0e-31 139.0 499 25.9
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.2e-30 138.7 113 63.7
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 7.2e-28 129.4 79 72.2
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 2.1e-27 127.9 75 76.0
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 3.6e-27 127.1 163 39.9
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 5.7e-25 119.8 374 27.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 1.8e-23 114.8 66 75.8
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 1.2e-22 112.1 72 66.7
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 5.0e-21 106.7 87 56.3
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 5.5e-12 76.6 47 74.5
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 3.6e-11 73.9 45 75.6
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.8e-10 71.6 70 51.4
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 8.2e-08 62.8 48 52.1


User provided reference genes

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