Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p046175 Quercus lobata HOM05D000849 ORTHO05D338146 2.0e-36 155.2 76 100.0
QL06p046096 Quercus lobata HOM05D000849 ORTHO05D006066 2.9e-11 71.6 49 81.6
PGR119G1873 Punica granatum HOM05D000849 ORTHO05D006066 4.6e-09 64.3 49 67.3
Thecc.01G035700 Theobroma cacao HOM05D000849 ORTHO05D006066 4.6e-09 64.3 49 69.4
FAN23G2560 Fragaria x ananassa HOM05D000849 ORTHO05D006066 6.0e-09 63.9 59 59.3
CiPaw.01G038200 Carya illinoinensis HOM05D000849 ORTHO05D006066 7.8e-09 63.5 49 69.4
FAN19G2393 Fragaria x ananassa HOM05D000849 ORTHO05D006066 7.8e-09 63.5 42 76.2
MD15G1261700 Malus domestica HOM05D000849 ORTHO05D006066 7.8e-09 63.5 39 82.1
GSVIVG01018959001 Vitis vinifera HOM05D000849 ORTHO05D006066 7.8e-09 63.5 49 69.4
Cfa004308 Carpinus fangiana HOM05D000849 ORTHO05D006066 1.3e-08 62.8 49 65.3
Haze_15088 Corylus avellana HOM05D000849 ORTHO05D006066 1.3e-08 62.8 49 65.3
FvH4_1g13290 Fragaria vesca HOM05D000849 ORTHO05D006066 1.3e-08 62.8 39 79.5
Atru.chr3.572 Acer truncatum HOM05D000849 ORTHO05D006066 1.7e-08 62.4 49 67.3
MD02G1147400 Malus domestica HOM05D000849 ORTHO05D006066 1.7e-08 62.4 39 79.5
TWI73G0497 Tripterygium wilfordii HOM05D000849 ORTHO05D006066 1.7e-08 62.4 39 79.5
Ciclev10026648m.g Citrus clementina HOM05D000849 ORTHO05D006066 2.3e-08 62.0 49 67.3
Dinv13533 Davidia involucrata HOM05D000849 ORTHO05D006066 2.3e-08 62.0 49 67.3
Cpa.g.sc6.113 Carica papaya HOM05D000849 ORTHO05D006066 3.0e-08 61.6 49 65.3
Gohir.A12G064766 Gossypium hirsutum HOM05D000849 ORTHO05D006066 3.0e-08 61.6 49 63.3
Gohir.D12G064800 Gossypium hirsutum HOM05D000849 ORTHO05D006066 3.0e-08 61.6 49 63.3
Manes.01G136100 Manihot esculenta HOM05D000849 ORTHO05D006066 3.0e-08 61.6 49 67.3
Duzib147G1012 Durio zibethinus HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 79.5
PSO541G1912 Papaver somniferum HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 79.5
PSO675G4482 Papaver somniferum HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 79.5
Prupe.7G154700 Prunus persica HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 76.9
RcHm_v2.0_Chr2g0101121 Rosa chinensis HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 76.9
RcHm_v2.0_Chr2g0101561 Rosa chinensis HOM05D000849 ORTHO05D006066 3.9e-08 61.2 39 76.9
Sp5g11360 Schrenkiella parvula HOM05D000849 ORTHO05D006066 3.9e-08 61.2 49 63.3
arahy.Tifrunner.gnm1.ann1.KV6T2X Arachis hypogaea HOM05D000849 ORTHO05D006066 5.1e-08 60.8 49 65.3
arahy.Tifrunner.gnm1.ann1.N11TT5 Arachis hypogaea HOM05D000849 ORTHO05D006066 5.1e-08 60.8 49 65.3
C08p26070 Brassica napus HOM05D000849 ORTHO05D006066 5.1e-08 60.8 54 53.7
Lj1g0003590 Lotus japonicus HOM05D000849 ORTHO05D006066 5.1e-08 60.8 49 63.3
BcaB01g00572 Brassica carinata HOM05D000849 ORTHO05D006066 6.6e-08 60.5 49 59.2
CANSAT01G0485 Cannabis sativa HOM05D000849 ORTHO05D006066 6.6e-08 60.5 39 76.9
Lalb_Chr09g0333531 Lupinus albus HOM05D000849 ORTHO05D006066 6.6e-08 60.5 49 65.3
Psat0s3288g0080 Pisum sativum HOM05D000849 ORTHO05D006066 6.6e-08 60.5 49 65.3
TAR628G0662 Trochodendron aralioides HOM05D000849 ORTHO05D006066 6.6e-08 60.5 49 67.3
AL5G31210 Arabidopsis lyrata HOM05D000849 ORTHO05D006066 8.7e-08 60.1 49 61.2
CARHR160410 Cardamine hirsuta HOM05D000849 ORTHO05D006066 8.7e-08 60.1 49 61.2
Glyma.16G139700 Glycine max HOM05D000849 ORTHO05D006066 8.7e-08 60.1 49 65.3
THA.LOC104819207 Tarenaya hassleriana HOM05D000849 ORTHO05D006066 1.1e-07 59.7 49 59.2
AT3G50860 Arabidopsis thaliana HOM05D000849 ORTHO05D006066 1.5e-07 59.3 49 61.2
BcaC06g33326 Brassica carinata HOM05D000849 ORTHO05D006066 1.5e-07 59.3 49 61.2
Carub.0005s1725 Capsella rubella HOM05D000849 ORTHO05D006066 1.5e-07 59.3 49 61.2
Thhalv10010773m.g Eutrema salsugineum HOM05D000849 ORTHO05D006066 1.5e-07 59.3 49 61.2
TPR.G24126 Trifolium pratense HOM05D000849 ORTHO05D006066 1.5e-07 59.3 49 63.3
Eucgr.I02443 Eucalyptus grandis HOM05D000849 ORTHO05D006066 1.9e-07 58.9 48 62.5
Medtr8g077600 Medicago truncatula HOM05D000849 ORTHO05D006066 1.9e-07 58.9 49 63.3
Phvul.003G253500 Phaseolus vulgaris HOM05D000849 ORTHO05D006066 1.9e-07 58.9 49 61.2
Aa31LG4G18960 Aethionema arabicum HOM05D000849 ORTHO05D006066 2.5e-07 58.5 49 59.2
SGA_v2.0_scaffold43G16449 Striga asiatica HOM05D000849 ORTHO05D006066 2.5e-07 58.5 37 81.1
Dinv23518 Davidia involucrata HOM05D000849 ORTHO05D006066 3.3e-07 58.2 38 78.9
Hma1.2p1_0633F.1_g192530 Hydrangea macrophylla HOM05D000849 ORTHO05D006066 3.3e-07 58.2 39 79.5
Hma1.2p1_1375F.1_g279072 Hydrangea macrophylla HOM05D000849 ORTHO05D006066 3.3e-07 58.2 39 79.5
BcaC06g33077 Brassica carinata HOM05D000849 ORTHO05D006066 4.3e-07 57.8 49 59.2
ClCG07G005920 Citrullus lanatus HOM05D000849 ORTHO05D006066 4.3e-07 57.8 47 66.0
CsaV3_5G037100 Cucumis sativus L. HOM05D000849 ORTHO05D006066 4.3e-07 57.8 47 66.0
DCAR_022975 Daucus carota HOM05D000849 ORTHO05D006066 4.3e-07 57.8 37 81.1
Glyma.02G056900 Glycine max HOM05D000849 ORTHO05D006066 4.3e-07 57.8 49 63.3
Phvul.003G073000 Phaseolus vulgaris HOM05D000849 ORTHO05D006066 4.3e-07 57.8 39 71.8
Sed0018673 Sechium edule HOM05D000849 ORTHO05D006066 4.3e-07 57.8 47 66.0
Nn5g29613 Nelumbo nucifera HOM05D000849 ORTHO05D006066 5.6e-07 57.4 39 71.8
Hund13976 Selenicereus undatus HOM05D000849 ORTHO05D006066 5.6e-07 57.4 49 59.2
Aqoxy6G01117 Aquilegia oxysepala HOM05D000849 ORTHO05D006066 1.2e-06 56.2 38 71.1
MELO3C016632.2 Cucumis melo HOM05D000849 ORTHO05D006066 1.2e-06 56.2 47 63.8
EL10Ac6g15560 Beta vulgaris HOM05D000849 ORTHO05D006066 1.6e-06 55.8 38 73.7
CSS0006953 Camellia sinensis var. sinensis HOM05D000849 ORTHO05D006066 2.1e-06 55.5 37 73.0
Rhsim11G0177500 Rhododendron simsii HOM05D000849 ORTHO05D006066 2.1e-06 55.5 39 74.4
Gohir.A02G165400 Gossypium hirsutum HOM05D000849 ORTHO05D006066 2.8e-06 55.1 48 58.3
Gohir.D03G014601 Gossypium hirsutum HOM05D000849 ORTHO05D006066 2.8e-06 55.1 48 58.3
Gorai.003G014900 Gossypium raimondii HOM05D000849 ORTHO05D006066 2.8e-06 55.1 48 58.3
Potri.007G025400 Populus trichocarpa HOM05D000849 ORTHO05D006066 3.6e-06 54.7 49 59.2
Solyc01g109640.3 Solanum lycopersicum HOM05D000849 ORTHO05D006066 4.7e-06 54.3 36 75.0
Sopen01g051830 Solanum pennellii HOM05D000849 ORTHO05D006066 4.7e-06 54.3 36 75.0
BolC8t50225H Brassica oleracea HOM05D000849 ORTHO05D006066 8.1e-06 53.5 56 48.2
Migut.N01240 Erythranthe guttata HOM05D000849 ORTHO05D006066 8.1e-06 53.5 37 73.0


User provided reference genes

Program Settings