Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p044263 Quercus lobata HOM05D007587 ORTHO05D009657 1.9e-52 208.8 98 100.0
Dinv39924 Davidia involucrata HOM05D007587 ORTHO05D009657 9.4e-23 110.2 64 70.3
Prupe.7G145500 Prunus persica HOM05D007587 ORTHO05D009657 5.2e-21 104.4 61 72.1
FAN28G1310 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.0e-20 102.4 52 78.8
CSS0038445 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 3.3e-20 101.7 61 68.9
Manes.13G132300 Manihot esculenta HOM05D007587 ORTHO05D009657 5.7e-20 100.9 69 62.3
Psat2g163680 Pisum sativum HOM05D007587 ORTHO05D009657 5.7e-20 100.9 71 62.0
FAN23G2556 Fragaria x ananassa HOM05D007587 ORTHO05D009657 9.7e-20 100.1 52 76.9
Ciclev10027038m.g Citrus clementina HOM05D007587 ORTHO05D009657 1.7e-19 99.4 68 63.2
FAN26G0670 Fragaria x ananassa HOM05D007587 ORTHO05D009657 2.8e-19 98.6 52 75.0
Potri.005G130750 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.8e-19 98.6 69 59.4
Medtr5g018610 Medicago truncatula HOM05D007587 ORTHO05D009657 3.7e-19 98.2 70 61.4
Migut.H00502 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.3e-19 97.4 61 62.3
Glyma.11G061100 Glycine max HOM05D007587 ORTHO05D009657 1.4e-18 96.3 57 66.7
Atru.chr3.473 Acer truncatum HOM05D007587 ORTHO05D009657 2.4e-18 95.5 57 66.7
Thecc.01G045600 Theobroma cacao HOM05D007587 ORTHO05D009657 2.4e-18 95.5 57 66.7
ECA238G1538 Erigeron canadensis HOM05D003002 ORTHO05D002276 3.1e-18 95.1 52 73.1
Gohir.A11G188150 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.1e-18 95.1 47 76.6
Gohir.D11G194650 Gossypium hirsutum HOM05D007587 ORTHO05D009657 3.1e-18 95.1 47 76.6
Gorai.007G208100 Gossypium raimondii HOM05D007587 ORTHO05D009657 3.1e-18 95.1 47 76.6
Lsat_1_v5_gn_3_93981 Lactuca sativa HOM05D007587 ORTHO05D009657 3.1e-18 95.1 65 61.5
Cpa.g.sc15.59 Carica papaya HOM05D007587 ORTHO05D009657 7.0e-18 94.0 65 61.5
TAR381G1104 Trochodendron aralioides HOM05D007587 ORTHO05D009657 9.1e-18 93.6 62 56.5
Solyc02g090080.1 Solanum lycopersicum HOM05D007587 ORTHO05D009657 1.6e-17 92.8 50 70.0
COL.COLO4_22178 Corchorus olitorius HOM05D007587 ORTHO05D009657 2.6e-17 92.0 65 60.0
Lj7C15T6 Lonicera japonica HOM05D007587 ORTHO05D009657 2.6e-17 92.0 66 59.1
Phvul.002G023800 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 3.5e-17 91.7 64 59.4
SalBow1G8004 Salvia bowleyana HOM05D007587 ORTHO05D009657 3.5e-17 91.7 68 55.9
Cc07_g05380 Coffea canephora HOM05D007587 ORTHO05D009657 4.5e-17 91.3 62 56.5
TPR.G29850 Trifolium pratense HOM05D007587 ORTHO05D009657 4.5e-17 91.3 52 69.2
Nitab4.5_0005594g0030 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.9e-17 90.9 52 65.4
Psat0s261g0120 Pisum sativum HOM05D007587 ORTHO05D009657 5.9e-17 90.9 70 57.1
Manes.12G097400 Manihot esculenta HOM05D007587 ORTHO05D009657 1.3e-16 89.7 54 63.0
Lj2g0021293 Lotus japonicus HOM05D007587 ORTHO05D009657 3.8e-16 88.2 62 59.7
Glyma.16G143900 Glycine max HOM05D007587 ORTHO05D009657 1.9e-15 85.9 74 52.7
Lsat_1_v5_gn_2_87241 Lactuca sativa HOM05D007587 ORTHO05D009657 1.9e-15 85.9 47 70.2
Glyma.02G061500 Glycine max HOM05D007587 ORTHO05D009657 2.5e-15 85.5 73 50.7
Atru.chr13.897 Acer truncatum HOM05D007587 ORTHO05D009657 4.2e-15 84.7 58 53.4
AagrBONN_evm.TU.Sc2ySwM_117.169 Anthoceros agrestis HOM05D007587 ORTHO05D009657 9.4e-15 83.6 57 50.9
Potri.007G034000 Populus trichocarpa HOM05D007587 ORTHO05D009657 9.4e-15 83.6 68 50.0
Phvul.003G249500 Phaseolus vulgaris HOM05D007587 ORTHO05D009657 1.6e-14 82.8 64 54.7
Glyma.19G074100 Glycine max HOM05D007587 ORTHO05D009657 2.7e-14 82.0 46 65.2
QL02p001961 Quercus lobata HOM05D007587 ORTHO05D009657 8.0e-14 80.5 61 49.2
GSVIVG01034787001 Vitis vinifera HOM05D007587 ORTHO05D009657 1.4e-13 79.7 66 45.5
Sed0017528 Sechium edule HOM05D007587 ORTHO05D009657 1.8e-13 79.3 62 51.6
PGSC0003DMG400004952 Solanum tuberosum HOM05D007587 ORTHO05D009657 4.0e-13 78.2 67 47.8
vmacro04608 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 4.0e-13 78.2 65 46.2
CAN.G416.39 Capsicum annuum HOM05D007587 ORTHO05D009657 5.2e-13 77.8 43 60.5
Nitab4.5_0015343g0010 Nicotiana tabacum HOM05D007587 ORTHO05D009657 5.2e-13 77.8 43 60.5
Os12g0596101 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 5.2e-13 77.8 53 52.8
Zm00001eb135300 Zea mays HOM05D007587 ORTHO05D009657 5.2e-13 77.8 71 46.5
CSS0045179 Camellia sinensis var. sinensis HOM05D007587 ORTHO05D009657 6.8e-13 77.4 43 58.1
CDE06G1347 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 6.8e-13 77.4 72 44.4
arahy.Tifrunner.gnm1.ann1.986LRW Arachis hypogaea HOM05D007587 ORTHO05D009657 1.2e-12 76.6 67 46.3
arahy.Tifrunner.gnm1.ann1.JQT6QK Arachis hypogaea HOM05D007587 ORTHO05D009657 1.2e-12 76.6 67 46.3
Rhsim07G0216100 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.2e-12 76.6 48 54.2
Rhsim07G0216200 Rhododendron simsii HOM05D007587 ORTHO05D009657 1.2e-12 76.6 43 58.1
Potri.005G150300 Populus trichocarpa HOM05D007587 ORTHO05D009657 2.0e-12 75.9 43 58.1
CiPaw.15G043600 Carya illinoinensis HOM05D007587 ORTHO05D009657 2.6e-12 75.5 65 47.7
CiPaw.15G043500 Carya illinoinensis HOM05D007587 ORTHO05D009657 3.4e-12 75.1 61 47.5
Nn5g27361 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.4e-12 75.1 51 51.0
vmacro04607 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 3.4e-12 75.1 50 52.0
Cfa017911 Carpinus fangiana HOM05D007587 ORTHO05D009657 4.4e-12 74.7 59 45.8
CsaV3_2G017120 Cucumis sativus L. HOM05D007587 ORTHO05D009657 4.4e-12 74.7 73 47.9
Actinidia29637 Actinidia chinensis HOM05D007587 ORTHO05D009657 5.7e-12 74.3 43 53.5
MBI16_g05020_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 5.7e-12 74.3 61 47.5
Manes.18G051550 Manihot esculenta HOM05D007587 ORTHO05D009657 5.7e-12 74.3 56 48.2
Hma1.2p1_2651F.1_g326150 Hydrangea macrophylla HOM05D007587 ORTHO05D009657 7.5e-12 73.9 43 53.5
MBI16_g05021_MAGBIO Magnolia biondii HOM05D007587 ORTHO05D009657 7.5e-12 73.9 61 45.9
Zm00001eb052110 Zea mays HOM05D007587 ORTHO05D009657 7.5e-12 73.9 68 45.6
CiPaw.01G029300 Carya illinoinensis HOM05D007587 ORTHO05D009657 9.8e-12 73.6 48 68.8
SalBow7G1850 Salvia bowleyana HOM05D007587 ORTHO05D009657 9.8e-12 73.6 43 55.8
CDE04G0885 Ceratophyllum demersum HOM05D007587 ORTHO05D009657 1.3e-11 73.2 61 44.3
Cc10_g07830 Coffea canephora HOM05D007587 ORTHO05D009657 1.3e-11 73.2 65 46.2
TAR381G0827 Trochodendron aralioides HOM05D007587 ORTHO05D009657 1.3e-11 73.2 50 50.0
vmacro04609 Vaccinium macrocarpon HOM05D007587 ORTHO05D009657 1.3e-11 73.2 65 41.5
ClCG02G013040 Citrullus lanatus HOM05D007587 ORTHO05D009657 2.2e-11 72.4 65 46.2
Migut.O00867 Erythranthe guttata HOM05D007587 ORTHO05D009657 2.8e-11 72.0 52 50.0
Gohir.A01G124700 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.8e-11 72.0 51 47.1
Gohir.D01G112300 Gossypium hirsutum HOM05D007587 ORTHO05D009657 2.8e-11 72.0 51 47.1
Gorai.002G137200 Gossypium raimondii HOM05D007587 ORTHO05D009657 2.8e-11 72.0 51 47.1
Nn5g27362 Nelumbo nucifera HOM05D007587 ORTHO05D009657 2.8e-11 72.0 43 51.2
Os03g0673700 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 2.8e-11 72.0 43 53.5
COL.COLO4_35374 Corchorus olitorius HOM05D007587 ORTHO05D009657 3.7e-11 71.6 63 47.6
Mapoly0026s0006 Marchantia polymorpha HOM05D007587 ORTHO05D009657 3.7e-11 71.6 72 40.3
Thecc.08G082100 Theobroma cacao HOM05D007587 ORTHO05D009657 3.7e-11 71.6 43 53.5
Os03g0673400 Oryza sativa ssp. japonica HOM05D007587 ORTHO05D009657 4.8e-11 71.2 49 49.0
Migut.C00432 Erythranthe guttata HOM05D007587 ORTHO05D009657 6.3e-11 70.9 52 48.1
Nn5g27360 Nelumbo nucifera HOM05D007587 ORTHO05D009657 6.3e-11 70.9 43 53.5
Nn4g24320 Nelumbo nucifera HOM05D007587 ORTHO05D009657 3.1e-10 68.6 62 45.2
Pp3c20_19960 Physcomitrium patens HOM05D007587 ORTHO05D009657 4.1e-10 68.2 63 46.0
Pp3c24_89 Physcomitrium patens HOM05D007587 ORTHO05D009657 1.2e-09 66.6 63 46.0
CBR_g28808 Chara braunii HOM05D007587 ORTHO05D009657 1.6e-09 66.2 42 50.0
Pp3c19_1061 Physcomitrium patens HOM05D007587 ORTHO05D009657 8.5e-08 60.5 45 53.3
Pp3c19_1062 Physcomitrium patens HOM05D007587 ORTHO05D009657 2.5e-07 58.9 44 52.3


User provided reference genes

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