Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.1e-236 823.2 486 100.0
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.5e-169 599.4 421 79.3
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 3.7e-160 568.9 492 69.3
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.1e-159 567.4 479 71.6
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.5e-153 547.0 432 71.5
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 1.1e-151 540.8 429 70.6
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.0e-150 536.6 429 70.2
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-148 530.4 438 69.6
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.6e-147 525.8 440 69.3
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.1e-145 520.8 423 70.2
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 4.8e-144 515.4 422 68.0
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 4.1e-143 512.3 433 69.5
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.5e-142 510.4 421 70.3
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 2.9e-141 506.1 431 69.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.6e-139 500.4 424 68.2
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.4e-138 497.3 432 67.1
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 6.7e-138 495.0 418 68.4
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 4.4e-137 492.3 433 67.7
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 2.2e-136 490.0 425 64.9
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 6.3e-136 488.4 421 68.9
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 2.4e-135 486.5 431 66.1
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 4.1e-135 485.7 433 67.4
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 7.0e-135 485.0 423 66.4
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.6e-134 483.0 436 65.6
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.0e-133 481.1 429 66.0
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.3e-133 480.7 436 65.6
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.7e-133 480.3 422 67.1
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 1.5e-132 477.2 436 64.7
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 1.9e-132 476.9 483 61.5
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 1.9e-132 476.9 419 64.9
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 2.7e-131 473.0 452 62.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 3.6e-131 472.6 428 63.8
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 4.7e-131 472.2 425 64.9
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 8.0e-131 471.5 499 58.9
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.4e-130 470.7 420 65.2
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 2.3e-130 469.9 425 64.9
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 6.7e-130 468.4 422 67.3
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.0e-129 466.8 487 59.8
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.1e-127 461.1 422 63.5
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-127 461.1 423 64.3
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 9.1e-127 458.0 464 60.6
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 9.1e-127 458.0 426 63.8
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 4.5e-126 455.7 433 62.6
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 7.7e-126 454.9 427 62.3
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 7.7e-126 454.9 434 63.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.3e-125 454.1 424 63.7
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.5e-124 449.9 434 61.5
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.6e-123 447.2 422 64.2
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 2.1e-123 446.8 425 62.8
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 2.1e-123 446.8 431 61.5
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 2.7e-123 446.4 431 61.5
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.7e-123 446.4 432 62.7
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.7e-123 446.4 432 61.6
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 3.6e-123 446.0 433 63.7
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.7e-123 445.7 422 64.0
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 6.1e-123 445.3 441 60.5
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-122 444.1 422 63.5
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 5.2e-122 442.2 422 62.6
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.8e-120 435.6 485 59.6
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 6.3e-120 435.3 456 59.2
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 6.3e-120 435.3 428 59.3
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 6.3e-120 435.3 434 61.5
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-119 434.1 421 61.8
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 2.4e-119 433.3 431 60.6
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 5.4e-119 432.2 402 64.2
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 9.1e-119 431.4 418 60.5
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.7e-117 427.2 431 61.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.5e-116 424.1 417 62.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 3.2e-116 422.9 417 62.6
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 4.2e-116 422.5 527 52.6
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 5.5e-116 422.2 424 60.4
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.6e-115 420.6 416 59.4
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 1.6e-115 420.6 428 61.9
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.6e-113 413.3 422 58.5
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 5.7e-113 412.1 486 56.0
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 7.5e-113 411.8 366 66.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 9.8e-113 411.4 430 58.1
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.2e-112 410.2 420 59.3
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.7e-112 409.5 509 54.6
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 1.1e-111 407.9 428 59.6
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 3.1e-111 406.4 463 56.8
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 4.5e-110 402.5 426 56.3
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 4.5e-110 402.5 422 58.1
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.3e-109 400.2 424 56.6
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 3.8e-109 399.4 453 56.1
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 1.1e-108 397.9 443 57.8
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 4.3e-108 396.0 454 55.3
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.3e-108 396.0 380 60.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 6.1e-107 392.1 439 56.0
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 1.2e-105 387.9 340 66.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 1.5e-105 387.5 494 51.4
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 1.7e-104 384.0 449 56.6
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 3.7e-104 382.9 449 56.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.6e-102 377.5 460 54.3
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 3.5e-102 376.3 429 54.5
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.0e-101 374.8 434 53.9
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 2.3e-101 373.6 437 53.5
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 8.6e-101 371.7 421 54.9
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 9.5e-100 368.2 409 57.5
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 6.2e-99 365.5 426 56.6
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 3.1e-98 363.2 424 55.0
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 8.9e-98 361.7 484 49.4
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.2e-95 353.2 418 52.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 6.0e-94 349.0 416 55.3
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-93 347.8 410 54.9
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 2.1e-91 340.5 420 51.7
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 2.1e-91 340.5 532 45.3
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.8e-90 337.4 482 49.8
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 4.4e-89 332.8 334 63.2
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 9.9e-89 331.6 429 52.9
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 2.2e-88 330.5 243 77.4
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 7.8e-86 322.0 419 51.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.0e-85 321.6 426 50.7
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.3e-84 316.2 424 52.1
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.3e-84 315.5 408 51.2
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.1e-82 310.1 413 51.1
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 4.4e-81 306.2 482 46.9
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.9e-79 300.8 342 54.4
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 9.2e-79 298.5 263 66.2
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 3.5e-78 296.6 430 46.5
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 8.1e-75 285.4 452 46.7
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 2.9e-72 276.9 285 59.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.2e-70 271.6 437 45.1
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 5.1e-69 266.2 427 46.1
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 5.6e-68 262.7 454 42.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 5.3e-66 256.1 404 46.5
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 2.9e-48 197.2 423 35.2
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.0e-45 188.7 227 53.7
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.5e-44 184.9 458 36.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 4.8e-43 179.9 274 45.3
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 1.7e-32 144.8 452 30.1
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 1.9e-31 141.4 133 57.1
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 3.3e-28 130.6 441 29.3
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 2.2e-27 127.9 112 59.8
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.8e-27 127.5 191 47.6
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 2.2e-24 117.9 76 75.0
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 3.8e-24 117.1 185 45.4
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.1e-23 115.5 321 31.5
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-23 115.5 224 42.0
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 5.5e-23 113.2 170 52.9
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.4e-23 112.5 100 62.0
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.6e-22 110.5 67 74.6
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.8e-21 108.2 178 43.8
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 2.6e-20 104.4 387 27.1
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 5.7e-20 103.2 173 39.3
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 2.8e-19 100.9 191 42.9
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.2e-17 95.5 124 46.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 1.3e-16 92.0 204 39.2
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 8.5e-16 89.4 191 41.4
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.2e-15 87.4 152 41.4
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 2.7e-14 84.3 78 61.5
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 6.1e-14 83.2 308 29.5
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.4e-13 82.0 267 30.3
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 8.8e-13 79.3 319 28.5
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 2.8e-11 74.3 156 43.6
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.6e-09 68.6 105 41.9
SMO358G0116 Selaginella moellendorffii HOM05D004401 ORTHO05D005169 5.9e-09 66.6 68 50.0
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 2.2e-08 64.7 107 47.7
Zm00001eb411800 Zea mays HOM05D022290 ORTHO05D005169 4.2e-07 60.5 123 43.9
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 6.1e-06 56.6 98 46.9


User provided reference genes

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