Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 7.9e-180 633.6 316 100.0
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 4.9e-97 358.6 319 60.8
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.2e-96 355.9 319 60.5
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 1.2e-95 354.0 320 60.0
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 4.6e-95 352.1 196 87.2
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 1.7e-94 350.1 194 87.6
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.3e-94 349.7 319 60.5
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 3.0e-94 349.4 197 86.3
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 3.9e-94 349.0 194 86.6
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 5.1e-94 348.6 319 60.8
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.6e-94 348.2 197 85.8
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 8.6e-94 347.8 197 85.3
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.3e-93 345.9 319 59.2
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 3.3e-93 345.9 319 59.2
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 3.3e-93 345.9 197 85.3
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 5.6e-93 345.1 198 85.9
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 7.3e-93 344.7 198 85.4
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 7.3e-93 344.7 319 58.6
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 2.8e-92 342.8 196 85.7
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.8e-92 342.8 319 59.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 2.8e-92 342.8 319 59.6
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.8e-92 342.8 319 58.6
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 2.8e-92 342.8 319 59.6
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-91 339.0 194 83.0
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 5.2e-91 338.6 319 59.2
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 5.2e-91 338.6 319 59.2
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 5.2e-91 338.6 319 57.7
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 8.9e-91 337.8 319 59.9
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 2.0e-90 336.7 194 84.5
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 3.4e-90 335.9 196 83.7
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 3.4e-90 335.9 319 58.6
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.4e-90 335.5 194 82.5
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 7.6e-90 334.7 319 58.3
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 9.9e-90 334.3 319 57.7
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 6.4e-89 331.6 316 56.6
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 8.4e-89 331.3 320 56.9
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.4e-89 331.3 337 55.8
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.1e-88 330.9 195 82.1
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.4e-88 330.5 320 56.6
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 1.4e-88 330.5 195 82.6
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 2.4e-88 329.7 201 81.6
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 3.2e-88 329.3 320 56.2
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 4.2e-88 328.9 195 81.0
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 7.1e-88 328.2 318 57.5
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.2e-87 327.4 196 83.2
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.6e-87 327.0 194 81.4
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.1e-87 326.6 319 58.6
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 2.1e-87 326.6 196 81.1
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 4.6e-87 325.5 192 81.8
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 6.0e-87 325.1 194 81.4
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 7.8e-87 324.7 196 81.6
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.7e-86 323.6 319 56.4
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 2.3e-86 323.2 194 81.4
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 2.3e-86 323.2 194 80.4
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 3.0e-86 322.8 196 81.1
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 3.0e-86 322.8 319 56.1
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.9e-86 322.4 319 55.5
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 1.1e-85 320.9 195 80.0
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 1.5e-85 320.5 195 79.5
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 1.5e-85 320.5 196 80.6
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.9e-85 320.1 196 79.1
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 5.6e-85 318.5 195 79.5
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 5.6e-85 318.5 193 80.8
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.3e-85 318.2 319 55.5
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 2.1e-84 316.6 319 54.5
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.1e-84 316.6 195 79.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 3.6e-84 315.8 195 78.5
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 3.6e-84 315.8 195 79.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 3.6e-84 315.8 319 54.5
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 4.8e-84 315.5 319 54.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 4.8e-84 315.5 200 78.5
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 6.2e-84 315.1 319 53.9
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 1.1e-83 314.3 319 54.2
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.1e-83 314.3 195 78.5
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 5.3e-83 312.0 195 76.9
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 6.9e-83 311.6 318 54.1
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 9.0e-83 311.2 295 58.0
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 8.4e-81 304.7 197 75.1
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 1.1e-80 304.3 196 78.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 1.9e-80 303.5 205 75.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 9.3e-80 301.2 195 74.9
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 9.3e-80 301.2 196 76.0
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 1.2e-79 300.8 195 75.4
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.2e-79 300.8 196 76.5
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-79 300.4 196 75.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 1.6e-79 300.4 195 75.9
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-79 300.4 195 75.9
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 1.6e-79 300.4 196 75.0
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.6e-79 298.9 365 51.2
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 6.0e-79 298.5 196 76.5
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 6.0e-79 298.5 196 76.5
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 1.0e-78 297.7 187 77.5
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-78 297.7 196 75.5
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 2.3e-78 296.6 195 74.9
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 2.3e-78 296.6 319 53.0
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 3.0e-78 296.2 195 75.4
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 3.9e-78 295.8 197 74.6
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 5.1e-78 295.4 195 74.4
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.5e-77 293.9 320 51.9
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.9e-77 293.5 320 51.9
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.1e-76 290.0 203 71.4
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.2e-74 284.3 183 76.0
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 4.5e-74 282.3 391 49.4
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 1.3e-73 280.8 217 66.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.8e-73 279.3 195 71.3
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 3.8e-73 279.3 195 71.3
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 4.9e-73 278.9 354 50.3
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 8.4e-73 278.1 184 75.0
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 1.6e-71 273.9 178 77.0
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 3.5e-71 272.7 196 67.9
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 7.9e-71 271.6 320 49.4
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.8e-70 270.4 169 79.9
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 7.4e-69 265.0 196 64.8
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 2.1e-68 263.5 196 65.8
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 2.1e-68 263.5 196 65.8
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-68 263.5 196 65.8
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 2.1e-68 263.5 231 63.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 8.1e-68 261.5 320 49.1
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 8.4e-65 251.5 196 63.3
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 9.3e-64 248.1 194 63.9
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 1.6e-63 247.3 194 62.9
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 7.9e-63 245.0 262 54.2
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 2.3e-62 243.4 196 63.3
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 1.1e-61 241.1 195 59.5
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 7.4e-61 238.4 194 60.3
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.6e-60 237.3 201 58.2
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 4.8e-60 235.7 169 71.0
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 9.7e-53 211.5 257 49.4
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 1.1e-51 208.0 193 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.4e-51 207.6 196 54.1
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 4.5e-50 202.6 169 58.6
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 2.2e-49 200.3 182 58.2
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 8.5e-49 198.4 170 62.9
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 3.7e-44 183.0 93 91.4
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 1.4e-43 181.0 153 58.8
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.9e-40 170.6 142 62.0
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 4.4e-37 159.5 192 45.3
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 2.4e-35 153.7 139 59.0
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 9.1e-35 151.8 100 77.0
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 1.7e-33 147.5 195 39.5
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 6.5e-33 145.6 84 84.5
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 2.5e-32 143.7 245 36.3
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 4.4e-29 132.9 84 71.4
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-25 121.7 138 48.6
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 4.0e-22 109.8 192 35.9
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 5.2e-22 109.4 91 59.3
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 8.3e-20 102.1 74 74.3
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 2.7e-10 70.5 135 37.8
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 1.1e-08 65.1 194 27.3


User provided reference genes

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