Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p042177 Quercus lobata HOM05D007434 ORTHO05D009541 3.9e-44 181.0 88 100.0
CiPaw.01G021200 Carya illinoinensis HOM05D007434 ORTHO05D009541 4.0e-25 117.9 92 66.3
CiPaw.02G009300 Carya illinoinensis HOM05D007434 ORTHO05D009541 4.9e-23 110.9 96 62.5
Prupe.7G136000 Prunus persica HOM05D007434 ORTHO05D009541 2.8e-18 95.1 92 55.4
Atru.chr3.394 Acer truncatum HOM05D007434 ORTHO05D009541 1.4e-17 92.8 91 57.1
Ciclev10027106m.g Citrus clementina HOM05D007434 ORTHO05D009541 2.4e-17 92.0 93 58.1
Potri.007G041500 Populus trichocarpa HOM05D007434 ORTHO05D009541 4.1e-17 91.3 93 51.6
Haze_15425 Corylus avellana HOM05D007434 ORTHO05D009541 9.0e-17 90.1 71 63.4
FvH4_1g15740 Fragaria vesca HOM05D007434 ORTHO05D009541 5.9e-16 87.4 101 53.5
FAN23G2206 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.7e-15 85.9 106 50.0
FAN28G0198 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.7e-15 85.9 101 52.5
Glyma.11G057300 Glycine max HOM05D007434 ORTHO05D009541 2.2e-15 85.5 91 52.7
MD15G1281800 Malus domestica HOM05D007434 ORTHO05D009541 5.0e-15 84.3 82 50.0
Sed0015330 Sechium edule HOM05D007434 ORTHO05D009541 5.5e-14 80.9 94 51.1
CsaV3_6G043150 Cucumis sativus L. HOM05D007434 ORTHO05D009541 7.2e-14 80.5 84 53.6
Glyma.01G184900 Glycine max HOM05D007434 ORTHO05D009541 9.4e-14 80.1 90 50.0
ClCG01G016730 Citrullus lanatus HOM05D007434 ORTHO05D009541 1.2e-13 79.7 99 47.5
MELO3C007552.2 Cucumis melo HOM05D007434 ORTHO05D009541 1.2e-13 79.7 84 54.8
Lalb_Chr05g0213231 Lupinus albus HOM05D007434 ORTHO05D009541 1.2e-13 79.7 88 50.0
Phvul.002G020200 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 2.1e-13 79.0 99 49.5
Lj2g0026149 Lotus japonicus HOM05D007434 ORTHO05D009541 4.6e-13 77.8 91 49.5
Manes.13G126300 Manihot esculenta HOM05D007434 ORTHO05D009541 1.8e-12 75.9 85 47.1
Lalb_Chr09g0323081 Lupinus albus HOM05D007434 ORTHO05D009541 3.0e-12 75.1 94 53.2
Atru.chr3.392 Acer truncatum HOM05D007434 ORTHO05D009541 5.1e-12 74.3 88 48.9
Nn1g05850 Nelumbo nucifera HOM05D007434 ORTHO05D009541 5.1e-12 74.3 94 41.5
Medtr5g017710 Medicago truncatula HOM05D007434 ORTHO05D009541 1.5e-11 72.8 92 45.7
TPR.G21269 Trifolium pratense HOM05D007434 ORTHO05D009541 1.5e-11 72.8 90 48.9
Lj4g0021906 Lotus japonicus HOM05D007434 ORTHO05D009541 9.7e-11 70.1 92 46.7
Manes.12G100300 Manihot esculenta HOM05D007434 ORTHO05D009541 4.8e-10 67.8 85 44.7
Oeu050758.1 Olea europaea HOM05D007434 ORTHO05D009541 8.2e-10 67.0 82 42.7
Atru.chr3.395 Acer truncatum HOM05D007434 ORTHO05D013638 1.4e-09 66.2 105 38.1
Sed0003827 Sechium edule HOM05D007434 ORTHO05D009541 2.4e-09 65.5 92 50.0
Ciclev10027212m.g Citrus clementina HOM05D007434 ORTHO05D009541 4.1e-09 64.7 82 46.3
Gohir.D11G197450 Gossypium hirsutum HOM05D007434 ORTHO05D009541 5.3e-09 64.3 90 46.7
Lalb_Chr05g0226641 Lupinus albus HOM05D007434 ORTHO05D009541 5.3e-09 64.3 90 45.6
Manes.12G100200 Manihot esculenta HOM05D007434 ORTHO05D009541 5.3e-09 64.3 92 41.3
Atru.chr3.391 Acer truncatum HOM05D007434 ORTHO05D009541 6.9e-09 63.9 88 44.3
FAN26G1295 Fragaria x ananassa HOM05D007434 ORTHO05D019139 6.9e-09 63.9 94 39.4
Dinv29971 Davidia involucrata HOM05D008581 ORTHO05D009541 9.1e-09 63.5 67 49.3
Nn5g30204 Nelumbo nucifera HOM05D007434 ORTHO05D009541 1.2e-08 63.2 95 37.9
COL.COLO4_11386 Corchorus olitorius HOM05D007434 ORTHO05D009541 1.5e-08 62.8 92 46.7
FAN28G0171 Fragaria x ananassa HOM05D007434 ORTHO05D009541 1.5e-08 62.8 94 38.3
Manes.13G126400 Manihot esculenta HOM05D007434 ORTHO05D009541 1.5e-08 62.8 96 39.6
Potri.007G041400 Populus trichocarpa HOM05D007434 ORTHO05D009541 1.5e-08 62.8 87 41.4
COL.COLO4_11385 Corchorus olitorius HOM05D007434 ORTHO05D009541 2.6e-08 62.0 83 42.2
Lalb_Chr09g0333721 Lupinus albus HOM05D007434 ORTHO05D009541 2.6e-08 62.0 94 44.7
Actinidia12058 Actinidia chinensis HOM05D007434 ORTHO05D009541 4.5e-08 61.2 61 52.5
Glyma.17G176700 Glycine max HOM05D007434 ORTHO05D009541 4.5e-08 61.2 84 45.2
Nn1g05851 Nelumbo nucifera HOM05D007434 ORTHO05D009541 4.5e-08 61.2 88 40.9
Lj2g0001941 Lotus japonicus HOM05D007434 ORTHO05D009541 1.0e-07 60.1 99 38.4
Cpa.g.sc55.176 Carica papaya HOM05D007434 ORTHO05D009541 1.7e-07 59.3 85 44.7
DCAR_010906 Daucus carota HOM05D007434 ORTHO05D009541 1.7e-07 59.3 91 44.0
arahy.Tifrunner.gnm1.ann1.T0173K Arachis hypogaea HOM05D007434 ORTHO05D009541 2.2e-07 58.9 87 43.7
Gohir.A11G190650 Gossypium hirsutum HOM05D007434 ORTHO05D009541 2.2e-07 58.9 82 47.6
Lalb_Chr05g0213221 Lupinus albus HOM05D007434 ORTHO05D009541 2.2e-07 58.9 91 41.8
BolC2t12536H Brassica oleracea HOM05D012520 ORTHO05D013638 2.9e-07 58.5 81 42.0
Glyma.05G083900 Glycine max HOM05D007434 ORTHO05D009541 3.8e-07 58.2 80 43.8
QL06p042201 Quercus lobata HOM05D007434 ORTHO05D009541 3.8e-07 58.2 90 42.2
Glyma.05G084000 Glycine max HOM05D007434 ORTHO05D009541 5.0e-07 57.8 85 43.5
Sabra07G0037300 Salix brachista HOM05D008581 ORTHO05D009966 5.0e-07 57.8 108 39.8
TPR.G19007 Trifolium pratense HOM05D007434 ORTHO05D009541 5.0e-07 57.8 82 42.7
BcaC03g18397 Brassica carinata HOM05D012520 ORTHO05D013638 6.5e-07 57.4 79 41.8
CiPaw.01G021300 Carya illinoinensis HOM05D007434 ORTHO05D009541 6.5e-07 57.4 85 42.4
Glyma.17G176500 Glycine max HOM05D007434 ORTHO05D009541 8.5e-07 57.0 80 42.5
Lj4g0023681 Lotus japonicus HOM05D007434 ORTHO05D009541 8.5e-07 57.0 93 39.8
FvH4_1g15720 Fragaria vesca HOM05D007434 ORTHO05D009541 1.4e-06 56.2 84 40.5
Thecc.01G053200 Theobroma cacao HOM05D007434 ORTHO05D009541 1.4e-06 56.2 85 37.6
Phvul.003G245500 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 1.9e-06 55.8 86 40.7
Migut.H00450 Erythranthe guttata HOM05D018578 ORTHO05D020597 2.5e-06 55.5 85 40.0
Prupe.7G135900 Prunus persica HOM05D007434 ORTHO05D019139 2.5e-06 55.5 88 42.0
Prupe.7G136100 Prunus persica HOM05D007434 ORTHO05D013638 2.5e-06 55.5 97 39.2
HPP92_004110 Vanilla planifolia HOM05D037097 ORTHO05D049318 2.5e-06 55.5 88 40.9
Aqoxy6G01381 Aquilegia oxysepala HOM05D007434 ORTHO05D009541 3.2e-06 55.1 76 42.1
Gohir.A02G159900 Gossypium hirsutum HOM05D007434 ORTHO05D009541 3.2e-06 55.1 89 44.9
Gohir.D03G020700 Gossypium hirsutum HOM05D007434 ORTHO05D009541 3.2e-06 55.1 89 44.9
Gorai.003G021800 Gossypium raimondii HOM05D007434 ORTHO05D009541 3.2e-06 55.1 89 44.9
Phvul.003G245601 Phaseolus vulgaris HOM05D007434 ORTHO05D009541 3.2e-06 55.1 80 40.0
A02p44350 Brassica napus HOM05D012520 ORTHO05D013638 7.2e-06 53.9 74 41.9
BraA02t09352Z Brassica rapa HOM05D012520 ORTHO05D013638 7.2e-06 53.9 74 41.9
CSS0004315 Camellia sinensis var. sinensis HOM05D035102 ORTHO05D016155 7.2e-06 53.9 89 36.0
Cpa.g.sc55.177 Carica papaya HOM05D007434 ORTHO05D009541 7.2e-06 53.9 107 30.8
QL06p042046 Quercus lobata HOM05D008581 ORTHO05D009966 7.2e-06 53.9 103 37.9


User provided reference genes

Program Settings