Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p041881 Quercus lobata HOM05D005929 ORTHO05D007869 0.0e+00 1161.7 593 100.0
Cfa004003 Carpinus fangiana HOM05D005929 ORTHO05D007869 2.7e-290 1001.5 592 86.7
CiPaw.01G019600 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.3e-263 912.9 592 80.4
CiPaw.02G008900 Carya illinoinensis HOM05D005929 ORTHO05D007869 1.6e-263 912.5 592 80.6
Manes.12G099700 Manihot esculenta HOM05D005929 ORTHO05D007869 6.7e-249 864.0 593 75.4
GSVIVG01022148001 Vitis vinifera HOM05D005929 ORTHO05D007869 4.5e-245 851.3 594 76.1
Prupe.7G135500 Prunus persica HOM05D005929 ORTHO05D007869 1.3e-244 849.7 593 77.4
Dinv39868 Davidia involucrata HOM05D005929 ORTHO05D007869 5.0e-244 847.8 594 77.3
Potri.005G137100 Populus trichocarpa HOM05D005929 ORTHO05D007869 7.2e-243 844.0 593 75.9
MD00G1045200 Malus domestica HOM05D005929 ORTHO05D007869 1.2e-242 843.2 595 75.6
CSS0000081 Camellia sinensis var. sinensis HOM05D005929 ORTHO05D007869 6.7e-241 837.4 594 75.1
MD02G1169700 Malus domestica HOM05D005929 ORTHO05D007869 9.7e-240 833.6 595 75.0
Sabra05G0109600 Salix brachista HOM05D005929 ORTHO05D007869 4.1e-238 828.2 593 74.0
VMungo0251G2155 Vigna mungo HOM05D005929 ORTHO05D007869 2.0e-237 825.9 593 72.8
Phvul.003G244900 Phaseolus vulgaris HOM05D005929 ORTHO05D007869 4.5e-237 824.7 593 72.8
Glyma.17G175900 Glycine max HOM05D005929 ORTHO05D007869 4.2e-235 818.1 592 72.3
TPR.G19031 Trifolium pratense HOM05D005929 ORTHO05D007869 4.2e-235 818.1 593 72.8
Lalb_Chr05g0226621 Lupinus albus HOM05D005929 ORTHO05D007869 8.0e-234 813.9 593 71.2
Ciclev10025029m.g Citrus clementina HOM05D005929 ORTHO05D007869 1.4e-233 813.1 593 73.2
TWI09G0459 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 2.3e-233 812.4 593 73.4
Ca_21176_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 8.8e-233 810.4 592 72.0
TWI53G1997 Tripterygium wilfordii HOM05D005929 ORTHO05D007869 5.7e-232 807.7 593 72.3
Glyma.05G084300 Glycine max HOM05D005929 ORTHO05D007869 9.8e-232 807.0 593 71.7
Lj4g0006502 Lotus japonicus HOM05D005929 ORTHO05D007869 1.7e-231 806.2 593 71.8
Actinidia16503 Actinidia chinensis HOM05D005929 ORTHO05D007869 2.8e-231 805.4 593 73.0
Psat4g087280 Pisum sativum HOM05D005929 ORTHO05D007869 4.8e-231 804.7 591 71.2
CANSAT56G1082 Cannabis sativa HOM05D005929 ORTHO05D007869 2.0e-229 799.3 593 73.2
TAR628G1297 Trochodendron aralioides HOM05D005929 ORTHO05D007869 4.2e-227 791.6 595 71.6
FvH4_1g15790 Fragaria vesca HOM05D005929 ORTHO05D007869 7.2e-227 790.8 593 73.0
ClCG01G016760 Citrullus lanatus HOM05D005929 ORTHO05D007869 1.2e-226 790.0 594 71.9
FAN19G1416 Fragaria x ananassa HOM05D005929 ORTHO05D007869 1.6e-226 789.6 593 72.8
FAN28G0152 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.7e-226 788.1 593 72.7
Sed0025648 Sechium edule HOM05D005929 ORTHO05D007869 4.7e-226 788.1 595 71.6
CsaV3_6G043190 Cucumis sativus L. HOM05D005929 ORTHO05D007869 2.3e-225 785.8 593 71.5
RcHm_v2.0_Chr2g0105071 Rosa chinensis HOM05D005929 ORTHO05D007869 3.0e-225 785.4 594 72.9
FAN26G1042 Fragaria x ananassa HOM05D005929 ORTHO05D007869 4.0e-225 785.0 593 72.3
FAN23G0057 Fragaria x ananassa HOM05D005929 ORTHO05D007869 6.8e-225 784.3 593 72.0
MELO3C007555.2 Cucumis melo HOM05D005929 ORTHO05D007869 2.6e-224 782.3 594 71.4
Gorai.007G211400 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.3e-223 780.0 593 70.3
Duzib147G0952 Durio zibethinus HOM05D005929 ORTHO05D007869 1.6e-221 773.1 594 70.4
Thecc.01G053700 Theobroma cacao HOM05D005929 ORTHO05D007869 5.9e-221 771.2 593 70.0
Gorai.003G022900 Gossypium raimondii HOM05D005929 ORTHO05D007869 1.7e-220 769.6 593 70.3
MBI06_g04503_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D007869 3.8e-220 768.5 597 70.2
Ca_22183_v3 Cicer arietinum L. HOM05D005929 ORTHO05D007869 5.6e-219 764.6 587 68.8
COL.COLO4_11392 Corchorus olitorius HOM05D005929 ORTHO05D007869 7.3e-219 764.2 597 70.0
Gohir.A02G159200 Gossypium hirsutum HOM05D005929 ORTHO05D007869 2.3e-217 759.2 593 69.6
Gohir.D03G021300 Gossypium hirsutum HOM05D005929 ORTHO05D007869 4.0e-217 758.4 593 69.3
PGR102G2065 Punica granatum HOM05D005929 ORTHO05D007869 1.5e-216 756.5 593 69.8
arahy.Tifrunner.gnm1.ann1.UKY0C7 Arachis hypogaea HOM05D005929 ORTHO05D007869 2.2e-215 752.7 663 62.4
Lj4A143G78 Lonicera japonica HOM05D005929 ORTHO05D007869 3.2e-214 748.8 595 69.4
Nn1g05837 Nelumbo nucifera HOM05D005929 ORTHO05D007869 7.8e-213 744.2 595 69.1
Cpa.g.sc55.172 Carica papaya HOM05D005929 ORTHO05D007869 5.6e-211 738.0 554 71.7
Atru.chr3.351 Acer truncatum HOM05D005929 ORTHO05D007869 7.3e-211 737.6 502 74.9
Gohir.D11G197600 Gossypium hirsutum HOM05D005929 ORTHO05D007869 8.0e-210 734.2 593 67.1
Cc07_g05890 Coffea canephora HOM05D005929 ORTHO05D007869 1.1e-209 733.8 592 66.7
Gohir.A11G190800 Gossypium hirsutum HOM05D005929 ORTHO05D007869 1.4e-209 733.4 593 67.5
Eucgr.H02007 Eucalyptus grandis HOM05D005929 ORTHO05D007869 1.2e-208 730.3 594 66.5
Sc03g0001480 Simmondsia chinensis HOM05D005929 ORTHO05D007869 7.8e-205 717.6 593 66.3
Lalb_Chr09g0333751 Lupinus albus HOM05D005929 ORTHO05D007869 1.6e-202 709.9 537 68.7
Hund13561 Selenicereus undatus HOM05D005929 ORTHO05D007869 8.1e-202 707.6 593 64.4
THA.LOC104821272 Tarenaya hassleriana HOM05D005929 ORTHO05D007869 6.8e-201 704.5 596 65.3
Rhsim08G0101600 Rhododendron simsii HOM05D005929 ORTHO05D007869 2.0e-200 703.0 815 53.4
PSO170G4100 Papaver somniferum HOM05D005929 ORTHO05D007869 1.1e-198 697.2 598 64.7
MSTRG.23760 Avicennia marina HOM05D005929 ORTHO05D007869 4.1e-198 695.3 594 64.3
PSO210G3061 Papaver somniferum HOM05D005929 ORTHO05D007869 4.1e-198 695.3 596 64.6
EL10Ac6g15157 Beta vulgaris HOM05D005929 ORTHO05D007869 9.2e-198 694.1 594 64.8
DCAR_010904 Daucus carota HOM05D005929 ORTHO05D007869 2.8e-194 682.6 593 64.2
vmacro17944 Vaccinium macrocarpon HOM05D005929 ORTHO05D007869 3.8e-191 672.2 772 53.2
SGA_v2.0_scaffold15G07274 Striga asiatica HOM05D005929 ORTHO05D007869 6.0e-189 664.8 598 61.2
PGSC0003DMG400015776 Solanum tuberosum HOM05D005929 ORTHO05D007869 3.9e-188 662.1 593 62.2
Migut.H00446 Erythranthe guttata HOM05D005929 ORTHO05D007869 6.6e-188 661.4 597 60.5
Oeu039068.2 Olea europaea HOM05D005929 ORTHO05D007869 1.5e-187 660.2 627 60.4
Nitab4.5_0010605g0010 Nicotiana tabacum HOM05D005929 ORTHO05D007869 1.9e-187 659.8 602 61.1
Peaxi162Scf00964g00160 Petunia axillaris HOM05D005929 ORTHO05D007869 2.5e-187 659.4 600 61.7
HanXRQChr15g0490721 Helianthus annuus HOM05D005929 ORTHO05D007869 7.3e-187 657.9 595 61.7
Sopen02g035300 Solanum pennellii HOM05D005929 ORTHO05D007869 9.6e-187 657.5 593 62.1
Solyc02g090650.4 Solanum lycopersicum HOM05D005929 ORTHO05D007869 3.1e-185 652.5 590 62.0
ECA232G2456 Erigeron canadensis HOM05D005929 ORTHO05D007869 5.2e-185 651.7 596 62.1
Aa31LG1G15360 Aethionema arabicum HOM05D005929 ORTHO05D007869 3.4e-184 649.0 630 58.4
CAN.G836.71 Capsicum annuum HOM05D005929 ORTHO05D007869 1.7e-183 646.7 593 61.0
Lsat_1_v5_gn_4_168021 Lactuca sativa HOM05D005929 ORTHO05D007869 5.4e-182 641.7 587 62.2
AUR62001947 Chenopodium quinoa HOM05D005929 ORTHO05D007869 7.1e-182 641.3 591 60.9
AUR62003860 Chenopodium quinoa HOM05D005929 ORTHO05D007869 1.0e-180 637.5 591 60.7
ATR0100G001 Amborella trichopoda HOM05D005929 ORTHO05D007869 3.9e-180 635.6 598 58.9
Thhalv10003742m.g Eutrema salsugineum HOM05D005929 ORTHO05D007869 2.5e-179 632.9 598 59.5
Sp2g29870 Schrenkiella parvula HOM05D005929 ORTHO05D007869 1.1e-177 627.5 598 59.0
Nitab4.5_0000310g0090 Nicotiana tabacum HOM05D005929 ORTHO05D007869 5.8e-176 621.7 604 59.1
Aqoxy5G01270 Aquilegia oxysepala HOM05D005929 ORTHO05D007869 9.9e-176 620.9 567 62.3
AL8G44640 Arabidopsis lyrata HOM05D005929 ORTHO05D007869 9.3e-174 614.4 597 59.1
Carub.0008s2770 Capsella rubella HOM05D005929 ORTHO05D007869 3.9e-172 609.0 598 58.7
BraA07t29438Z Brassica rapa HOM05D005929 ORTHO05D007869 1.9e-171 606.7 598 57.9
HPP92_009382 Vanilla planifolia HOM05D005929 ORTHO05D007869 9.6e-171 604.4 593 58.2
C07p24970 Brassica napus HOM05D005929 ORTHO05D007869 2.1e-170 603.2 597 57.6
BcaC06g34750 Brassica carinata HOM05D005929 ORTHO05D007869 2.8e-170 602.8 598 57.9
A07p17110 Brassica napus HOM05D005929 ORTHO05D007869 1.8e-169 600.1 599 57.6
CARHR280890 Cardamine hirsuta HOM05D005929 ORTHO05D007869 1.5e-168 597.0 600 57.3
BolC7t43027H Brassica oleracea HOM05D005929 ORTHO05D007869 3.2e-166 589.3 622 55.6
Duzib264G1189 Durio zibethinus HOM05D005929 ORTHO05D007869 1.3e-164 583.9 481 66.5
BcaB02g09988 Brassica carinata HOM05D005929 ORTHO05D007869 8.7e-164 581.3 598 56.5
Haze_15421 Corylus avellana HOM05D005929 ORTHO05D007869 2.5e-163 579.7 464 69.6
unitig_899.g14965 Utricularia gibba HOM05D005929 ORTHO05D007869 6.9e-161 571.6 623 53.3
Os10g0382300 Oryza sativa ssp. japonica HOM05D005929 ORTHO05D007869 4.9e-159 565.5 600 54.0
Zm00001eb223840 Zea mays HOM05D005929 ORTHO05D007869 6.5e-159 565.1 593 55.1
Hma1.2p1_0200F.1_g086000 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 7.1e-158 561.6 454 69.8
Ah.03g144730 Amaranthus hybridus HOM05D005929 ORTHO05D007869 4.5e-128 462.6 456 56.1
AT5G66810 Arabidopsis thaliana HOM05D005929 ORTHO05D007869 5.5e-110 402.5 389 57.8
Pp3c4_14260 Physcomitrium patens HOM05D005929 ORTHO05D007869 5.9e-104 382.5 643 40.4
Mapoly0148s0013 Marchantia polymorpha HOM05D005929 ORTHO05D007869 2.9e-103 380.2 666 39.2
CDE10G0504 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 1.7e-90 337.8 448 49.1
SMO116G0373 Selaginella moellendorffii HOM05D005929 ORTHO05D007869 2.3e-84 317.4 590 36.1
Hma1.2p1_0200F.1_g086010 Hydrangea macrophylla HOM05D005929 ORTHO05D007869 4.0e-84 316.6 313 61.3
SEGI_10908 Sequoiadendron giganteum HOM05D005929 ORTHO05D000002 5.8e-83 312.8 452 45.1
QL06p041946 Quercus lobata HOM05D005929 ORTHO05D007869 1.1e-68 265.4 143 94.4
Dinv29975 Davidia involucrata HOM05D005929 ORTHO05D007869 1.3e-66 258.5 369 47.2
SalBow1G6022 Salvia bowleyana HOM05D005929 ORTHO05D007869 2.6e-59 234.2 158 74.1
PSO782G4943 Papaver somniferum HOM05D005929 ORTHO05D007869 9.9e-59 232.3 182 68.1
RcHm_v2.0_Chr7g0235891 Rosa chinensis HOM05D005929 ORTHO05D007869 8.4e-58 229.2 212 59.9
DCAR_001419 Daucus carota HOM05D005929 ORTHO05D007869 1.6e-56 224.9 290 49.7
CDE10G0678 Ceratophyllum demersum HOM05D005929 ORTHO05D007869 5.1e-55 219.9 144 75.0
PSO339G4212 Papaver somniferum HOM05D005929 ORTHO05D007869 5.3e-44 183.3 156 59.6
MD15G1282100 Malus domestica HOM05D005929 ORTHO05D007869 5.5e-41 173.3 97 90.7
MD15G1282000 Malus domestica HOM05D005929 ORTHO05D007869 1.1e-36 159.1 106 84.0
Lsat_1_v5_gn_2_14601 Lactuca sativa HOM05D005929 ORTHO05D029973 2.5e-25 121.3 154 48.7
MBI08_g05057_MAGBIO Magnolia biondii HOM05D005929 ORTHO05D029973 9.1e-20 102.8 114 51.8
CAN.G363.39 Capsicum annuum HOM05D005929 ORTHO05D007869 3.0e-07 61.2 118 35.6
Lsat_1_v5_gn_2_40080 Lactuca sativa HOM05D005929 ORTHO05D029973 4.0e-07 60.8 119 37.8
Gorai.009G171100 Gossypium raimondii HOM05D003178 ORTHO05D003636 2.6e-06 58.2 157 26.1


User provided reference genes

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