Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 4503.4 2498 100.0
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 3389.7 2520 77.6
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 3187.5 2522 73.8
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2917.5 2547 68.0
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2788.4 2559 65.7
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2767.3 2555 64.8
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2759.6 2523 65.8
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2706.4 2523 65.3
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2681.0 2566 64.5
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2670.6 2573 64.2
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2667.1 2520 64.4
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2660.2 2523 63.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2653.6 2564 64.0
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2644.8 2452 65.5
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2643.6 2573 63.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2628.2 2533 64.2
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2625.1 2523 63.4
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2618.6 2524 64.3
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2586.6 2526 62.6
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2575.0 2526 62.6
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2566.6 2535 62.3
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2555.0 2526 63.6
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2526.9 2532 64.0
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 2513.0 2529 63.1
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2482.6 2517 62.4
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2473.7 2547 61.6
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2464.5 2570 60.2
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 2462.6 1877 76.7
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2437.1 2527 60.4
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2436.8 2530 60.7
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2425.2 2530 60.6
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2406.3 2518 60.6
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2389.8 2528 60.4
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2373.2 2520 60.4
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2368.2 2545 60.6
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 2363.2 2512 60.4
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2348.5 2519 59.3
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2346.2 2533 59.5
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2332.4 2546 60.2
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 2331.2 2530 60.3
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2300.4 2547 57.5
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2254.9 2536 58.1
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2252.6 2567 57.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 2252.6 2531 57.6
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 2246.1 2533 57.0
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 2243.0 2508 58.1
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2235.3 2209 63.0
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 2222.6 2548 57.1
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 2212.6 2512 57.7
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 2203.3 2556 55.7
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 2201.0 2514 57.4
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 2153.6 2587 56.0
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 2135.5 2038 64.9
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 2128.2 2326 59.7
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2123.6 2525 56.1
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 2123.2 2605 53.1
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 2112.8 2566 55.4
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2112.8 2519 54.8
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 2107.8 2507 56.1
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 2094.3 2532 55.3
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 2060.4 2536 53.2
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 2058.1 2540 53.5
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 2058.1 2515 55.6
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 2041.5 2536 52.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 2035.4 2534 55.1
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 2031.5 2656 51.7
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 2031.1 2551 55.1
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 2020.0 2523 53.1
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 2017.7 2523 53.1
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 2017.7 2521 53.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1972.6 2528 53.6
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1969.1 2535 52.8
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1948.3 2548 52.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1927.5 2397 53.5
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1901.7 2551 52.8
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1893.6 2542 51.4
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1809.3 2440 51.6
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1805.8 2446 49.3
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1800.4 2392 50.5
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1764.6 2535 50.9
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1747.6 2515 49.2
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1700.3 2521 50.2
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1697.2 2521 49.2
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1632.5 2641 45.7
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1617.8 2524 46.2
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1582.4 2563 45.8
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1577.0 2637 45.4
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1527.3 2568 45.6
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1482.2 2566 45.4
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1464.5 2530 46.5
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1445.6 2534 45.8
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1441.8 2522 45.6
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1406.7 2525 45.5
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1398.6 2468 45.1
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1379.4 2644 43.6
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 0.0e+00 1379.0 1713 56.0
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1370.9 2516 44.4
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1370.5 2475 44.2
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1322.8 2551 43.2
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1299.6 1293 61.6
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1262.7 2434 42.2
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1253.4 1752 49.4
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1246.1 2426 42.3
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 0.0e+00 1140.2 986 67.3
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 0.0e+00 1118.6 1047 65.4
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 0.0e+00 1091.3 1024 67.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 2.6e-286 990.3 2543 37.8
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 6.3e-280 969.1 2458 39.1
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.8e-266 924.5 2744 36.4
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 8.5e-253 879.0 2453 37.7
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 2.1e-251 874.4 2455 37.6
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 2.1e-251 874.4 2455 37.6
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.8e-250 871.3 2453 37.7
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 3.3e-249 867.1 2484 37.3
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 9.1e-247 859.0 725 68.0
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 2.0e-241 841.3 971 55.4
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.6e-235 820.5 952 57.8
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 5.6e-228 796.6 578 78.5
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.4e-209 733.8 2580 33.3
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.9e-196 691.8 1973 37.5
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.6e-190 672.2 1853 34.1
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 4.3e-164 584.3 1831 35.2
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 3.0e-157 561.6 515 61.4
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-146 526.6 1326 38.3
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 2.7e-142 511.9 447 62.4
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 2.6e-140 505.4 670 53.9
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 4.1e-138 498.0 791 43.7
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 3.2e-135 488.4 949 40.6
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 2.0e-105 389.4 1246 33.4
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 1.6e-102 379.8 2850 28.3
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 5.8e-92 344.7 2860 29.0
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 1.1e-90 340.5 988 33.1
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.8e-85 323.2 298 58.4
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 8.7e-80 304.3 1037 35.2
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 4.2e-74 285.4 515 42.9
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 6.4e-67 261.5 264 59.8
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 2.7e-65 256.1 264 59.1
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 2.8e-62 246.1 224 61.2
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 6.2e-62 245.0 449 39.2
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.1e-61 242.7 2830 27.1
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 5.8e-60 238.4 566 37.6
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 9.6e-55 221.1 2821 26.6
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 7.9e-49 201.4 2455 25.8
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 8.7e-48 198.0 556 34.0
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 1.3e-46 194.1 312 42.3
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 1.7e-38 167.2 187 57.2
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-36 161.0 168 59.5
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-36 161.0 299 41.1
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 3.6e-25 122.9 317 34.1
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 8.0e-25 121.7 265 39.6
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 1.8e-21 110.5 2193 26.8
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 1.5e-18 100.9 154 46.8
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.2e-15 91.3 227 36.1
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 9.8e-15 88.2 127 44.9
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 3.7e-14 86.3 74 62.2
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 4.8e-14 85.9 124 46.0
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 3.1e-13 83.2 71 63.4
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 1.0e-11 78.2 85 54.1
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.6e-09 70.9 79 53.2
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.2e-07 64.7 96 45.8
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 2.6e-07 63.5 185 31.4


User provided reference genes

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