Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p041440 Quercus lobata HOM05D004996 ORTHO05D005844 8.2e-169 597.0 316 100.0
Cfa004020 Carpinus fangiana HOM05D004996 ORTHO05D005844 4.5e-127 458.4 279 80.6
Haze_16997 Corylus avellana HOM05D004996 ORTHO05D005844 4.7e-124 448.4 271 80.8
Haze_16999 Corylus avellana HOM05D004996 ORTHO05D005844 1.2e-122 443.7 278 78.4
CiPaw.02G008500 Carya illinoinensis HOM05D004996 ORTHO05D005844 1.3e-118 430.3 278 76.3
Prupe.7G133700 Prunus persica HOM05D004996 ORTHO05D005844 2.5e-117 426.0 282 73.8
COL.COLO4_11407 Corchorus olitorius HOM05D004996 ORTHO05D005844 3.1e-115 419.1 267 73.4
TWI73G1146 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 1.2e-114 417.2 281 73.3
MD15G1283600 Malus domestica HOM05D004996 ORTHO05D005844 9.8e-114 414.1 282 72.3
Duzib147G0592 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-113 413.7 267 72.3
Duzib187G0496 Durio zibethinus HOM05D004996 ORTHO05D005844 1.3e-113 413.7 267 72.3
Thecc.01G055400 Theobroma cacao HOM05D004996 ORTHO05D005844 3.7e-113 412.1 267 72.7
Potri.007G043600 Populus trichocarpa HOM05D004996 ORTHO05D005844 7.8e-111 404.4 281 69.4
Sabra07G0038500 Salix brachista HOM05D004996 ORTHO05D005844 1.3e-110 403.7 281 69.4
RcHm_v2.0_Chr1g0334851 Rosa chinensis HOM05D004996 ORTHO05D005844 2.1e-108 396.4 271 73.1
GSVIVG01022135001 Vitis vinifera HOM05D004996 ORTHO05D005844 2.8e-108 396.0 270 71.5
Nitab4.5_0001064g0040 Nicotiana tabacum HOM05D004996 ORTHO05D005844 6.2e-108 394.8 317 63.1
VMungo0647G1648 Vigna mungo HOM05D004996 ORTHO05D005844 1.1e-107 394.0 281 68.0
Rhsim08G0100700 Rhododendron simsii HOM05D004996 ORTHO05D005844 3.1e-107 392.5 288 69.1
FvH4_7g06480 Fragaria vesca HOM05D004996 ORTHO05D005844 1.2e-106 390.6 271 72.7
Medtr5g096150 Medicago truncatula HOM05D004996 ORTHO05D005844 1.2e-106 390.6 281 66.5
LjContig00272g0020566 Lotus japonicus HOM05D004996 ORTHO05D005844 2.0e-106 389.8 279 68.5
Glyma.14G012500 Glycine max HOM05D004996 ORTHO05D005844 2.6e-106 389.4 278 68.0
FAN06G0805 Fragaria x ananassa HOM05D004996 ORTHO05D005844 3.4e-106 389.0 271 72.7
Glyma.02G301700 Glycine max HOM05D004996 ORTHO05D005844 3.4e-106 389.0 278 68.7
Gohir.D11G198600 Gossypium hirsutum HOM05D004996 ORTHO05D005844 3.4e-106 389.0 271 67.9
Manes.13G124600 Manihot esculenta HOM05D004996 ORTHO05D005844 4.4e-106 388.7 282 67.7
LjContig00272g0002438 Lotus japonicus HOM05D004996 ORTHO05D005844 5.8e-106 388.3 279 68.5
Ciclev10026041m.g Citrus clementina HOM05D004996 ORTHO05D005844 7.5e-106 387.9 284 68.7
Phvul.008G280200 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 1.3e-105 387.1 275 68.0
Lj7A69G43 Lonicera japonica HOM05D004996 ORTHO05D005844 2.2e-105 386.3 270 70.4
Nitab4.5_0000033g0420 Nicotiana tabacum HOM05D004996 ORTHO05D005844 2.2e-105 386.3 277 67.9
PGSC0003DMG400018987 Solanum tuberosum HOM05D004996 ORTHO05D005844 3.7e-105 385.6 268 69.4
FAN10G3007 Fragaria x ananassa HOM05D004996 ORTHO05D005844 4.9e-105 385.2 271 70.8
Gorai.007G212700 Gossypium raimondii HOM05D004996 ORTHO05D005844 1.9e-104 383.3 265 69.1
Gohir.A11G192100 Gossypium hirsutum HOM05D004996 ORTHO05D005844 7.1e-104 381.3 265 68.3
Solyc03g044470.4 Solanum lycopersicum HOM05D004996 ORTHO05D005844 2.1e-103 379.8 279 65.6
Hma1.2p1_0200F.1_g085840 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.7e-103 379.4 272 69.5
Hma1.2p1_2839F.1_g329295 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.7e-103 379.4 272 69.5
LjContig00081g0020523 Lotus japonicus HOM05D004996 ORTHO05D005844 2.7e-103 379.4 282 66.7
Eucgr.I00930 Eucalyptus grandis HOM05D004996 ORTHO05D005844 3.5e-103 379.0 269 67.3
Sopen03g008630 Solanum pennellii HOM05D004996 ORTHO05D005844 4.6e-103 378.6 279 65.2
CAN.G11.7 Capsicum annuum HOM05D004996 ORTHO05D005844 1.3e-102 377.1 267 66.7
Phvul.008G280300 Phaseolus vulgaris HOM05D004996 ORTHO05D005844 3.0e-102 375.9 275 65.5
Lalb_Chr17g0348991 Lupinus albus HOM05D004996 ORTHO05D005844 8.6e-102 374.4 269 67.7
Actinidia16491 Actinidia chinensis HOM05D004996 ORTHO05D005844 4.3e-101 372.1 266 67.3
Ca_05570_v3 Cicer arietinum L. HOM05D004996 ORTHO05D005844 1.2e-100 370.5 272 64.0
Lsat_1_v5_gn_2_84140 Lactuca sativa HOM05D004996 ORTHO05D005844 2.8e-100 369.4 270 69.3
Peaxi162Scf00685g00059 Petunia axillaris HOM05D004996 ORTHO05D005844 6.2e-100 368.2 277 65.3
Psat2g006800 Pisum sativum HOM05D004996 ORTHO05D005844 1.4e-99 367.1 281 61.9
MSTRG.23749 Avicennia marina HOM05D004996 ORTHO05D005844 5.2e-99 365.2 266 66.5
FAN01G0777 Fragaria x ananassa HOM05D004996 ORTHO05D005844 2.0e-98 363.2 284 65.1
arahy.Tifrunner.gnm1.ann1.X0LXK2 Arachis hypogaea HOM05D004996 ORTHO05D005844 3.4e-98 362.5 276 63.0
Cc03_g11370 Coffea canephora HOM05D004996 ORTHO05D005844 5.8e-98 361.7 270 65.6
DCAR_021441 Daucus carota HOM05D004996 ORTHO05D005844 2.9e-97 359.4 275 65.1
HanXRQChr14g0442821 Helianthus annuus HOM05D004996 ORTHO05D005844 2.9e-97 359.4 266 68.4
Cpa.g.sc55.151 Carica papaya HOM05D004996 ORTHO05D005844 3.2e-96 355.9 266 66.2
ECA238G3150 Erigeron canadensis HOM05D004996 ORTHO05D005844 1.6e-95 353.6 270 66.7
Oeu004826.1 Olea europaea HOM05D004996 ORTHO05D005844 1.6e-95 353.6 267 63.7
TAR376G0493 Trochodendron aralioides HOM05D004996 ORTHO05D005844 2.1e-95 353.2 266 65.8
PGR004G2460 Punica granatum HOM05D004996 ORTHO05D005844 2.7e-95 352.8 273 63.0
Sc07g0000030 Simmondsia chinensis HOM05D004996 ORTHO05D005844 3.5e-95 352.4 266 66.5
Sed0024126 Sechium edule HOM05D004996 ORTHO05D005844 1.0e-94 350.9 268 61.2
TPR.G36603 Trifolium pratense HOM05D004996 ORTHO05D005844 1.7e-94 350.1 270 61.9
vmacro17952 Vaccinium macrocarpon HOM05D004996 ORTHO05D005844 3.9e-94 349.0 272 64.3
CsaV3_2G016730 Cucumis sativus L. HOM05D004996 ORTHO05D005844 5.1e-94 348.6 268 61.2
CANSAT01G2652 Cannabis sativa HOM05D004996 ORTHO05D005844 1.5e-93 347.1 273 63.7
ClCG02G012610 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.3e-93 345.5 268 60.1
MELO3C020912.2 Cucumis melo HOM05D004996 ORTHO05D005844 4.3e-93 345.5 268 61.2
SalBow6G7153 Salvia bowleyana HOM05D004996 ORTHO05D005844 2.8e-92 342.8 271 62.7
Migut.H00434 Erythranthe guttata HOM05D004996 ORTHO05D005844 3.6e-92 342.4 267 62.5
CANSAT11G1602 Cannabis sativa HOM05D004996 ORTHO05D005844 1.1e-91 340.9 272 62.5
CANSAT11G2671 Cannabis sativa HOM05D004996 ORTHO05D005844 2.4e-91 339.7 272 62.1
Nn7g36483 Nelumbo nucifera HOM05D004996 ORTHO05D005844 4.4e-90 335.5 268 61.6
CARHR245500 Cardamine hirsuta HOM05D004996 ORTHO05D005844 2.9e-89 332.8 283 59.4
Ah.02g120540 Amaranthus hybridus HOM05D004996 ORTHO05D005844 4.9e-89 332.0 268 59.0
AUR62003879 Chenopodium quinoa HOM05D004996 ORTHO05D005844 3.2e-88 329.3 266 59.8
Thhalv10025731m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.3e-88 327.8 284 58.1
EL10Ac6g15748 Beta vulgaris HOM05D004996 ORTHO05D005844 2.3e-86 323.2 276 57.2
THA.LOC104807582 Tarenaya hassleriana HOM05D004996 ORTHO05D005844 6.6e-86 321.6 270 60.0
Sp7g34760 Schrenkiella parvula HOM05D004996 ORTHO05D005844 1.5e-85 320.5 273 58.2
AL7G13770 Arabidopsis lyrata HOM05D004996 ORTHO05D005844 2.5e-85 319.7 282 57.1
Aa31LG6G13970 Aethionema arabicum HOM05D004996 ORTHO05D005844 5.6e-85 318.5 273 58.2
A01p01870 Brassica napus HOM05D004996 ORTHO05D005844 5.6e-85 318.5 271 59.0
Aqoxy5G01233 Aquilegia oxysepala HOM05D004996 ORTHO05D005844 7.3e-85 318.2 266 58.3
C01p02010 Brassica napus HOM05D004996 ORTHO05D005844 7.3e-85 318.2 281 57.3
Thhalv10027846m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 9.6e-85 317.8 284 56.0
BraA01t00176Z Brassica rapa HOM05D004996 ORTHO05D005844 2.1e-84 316.6 270 58.9
Thhalv10027845m.g Eutrema salsugineum HOM05D004996 ORTHO05D005844 4.8e-84 315.5 284 56.3
AT4G37000 Arabidopsis thaliana HOM05D004996 ORTHO05D005844 6.2e-84 315.1 282 56.7
Carub.0007s0320 Capsella rubella HOM05D004996 ORTHO05D005844 6.2e-84 315.1 275 57.5
PSO210G5017 Papaver somniferum HOM05D004996 ORTHO05D005844 9.0e-83 311.2 269 56.5
Atru.chr3.335 Acer truncatum HOM05D004996 ORTHO05D005844 4.4e-82 308.9 235 64.3
PSO170G3325 Papaver somniferum HOM05D004996 ORTHO05D005844 1.3e-81 307.4 269 56.5
QL06p041448 Quercus lobata HOM05D004996 ORTHO05D005844 8.4e-81 304.7 272 55.1
Hund13551 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.9e-80 303.5 270 56.7
SGA_v2.0_scaffold15G07296 Striga asiatica HOM05D004996 ORTHO05D005844 7.1e-80 301.6 268 57.1
BolC1t00195H Brassica oleracea HOM05D004996 ORTHO05D005844 1.2e-79 300.8 313 50.2
Dinv29984 Davidia involucrata HOM05D004996 ORTHO05D005844 2.1e-79 300.1 201 73.6
unitig_736.g22663 Utricularia gibba HOM05D004996 ORTHO05D005844 8.7e-78 294.7 267 55.1
TPR.G36604 Trifolium pratense HOM05D004996 ORTHO05D005844 1.5e-77 293.9 203 67.5
TWI53G0428 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 3.3e-77 292.7 272 53.7
Cfa004018 Carpinus fangiana HOM05D004996 ORTHO05D005844 5.6e-77 292.0 270 54.4
CDE02G2298 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.8e-76 289.7 269 52.4
Haze_15405 Corylus avellana HOM05D004996 ORTHO05D005844 2.8e-76 289.7 274 54.7
BcaNung02518 Brassica carinata HOM05D004996 ORTHO05D005844 4.8e-76 288.9 271 53.9
Hma1.2p1_0200F.1_g085860 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.0e-75 285.8 203 69.0
Hma1.2p1_2839F.1_g329298 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 4.0e-75 285.8 203 69.0
CSS0031276 Camellia sinensis var. sinensis HOM05D004996 ORTHO05D005844 1.5e-74 283.9 198 71.2
ClCG02G012600 Citrullus lanatus HOM05D004996 ORTHO05D005844 4.5e-74 282.3 268 50.7
CDE02G3886 Ceratophyllum demersum HOM05D004996 ORTHO05D005844 2.2e-73 280.0 269 49.8
Ciclev10026248m.g Citrus clementina HOM05D004996 ORTHO05D005844 2.2e-73 280.0 266 54.1
CiPaw.01G018500 Carya illinoinensis HOM05D004996 ORTHO05D005844 8.4e-73 278.1 276 53.6
Potri.007G043700 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-72 277.7 275 52.4
CsaV3_2G016720 Cucumis sativus L. HOM05D004996 ORTHO05D005844 9.3e-72 274.6 270 50.7
MELO3C020913.2 Cucumis melo HOM05D004996 ORTHO05D005844 2.7e-71 273.1 269 49.4
Sed0020584 Sechium edule HOM05D004996 ORTHO05D005844 1.1e-69 267.7 271 49.4
Sabra07G0038400 Salix brachista HOM05D004996 ORTHO05D005844 2.5e-69 266.5 270 53.0
Ah.06g186350 Amaranthus hybridus HOM05D004996 ORTHO05D005844 3.1e-67 259.6 264 49.6
TWI09G1278 Tripterygium wilfordii HOM05D004996 ORTHO05D005844 9.0e-67 258.1 252 52.0
HPP92_028287 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.0e-66 256.9 269 48.7
ATR0009G017 Amborella trichopoda HOM05D004996 ORTHO05D005844 2.3e-62 243.4 262 50.0
Potri.007G043500 Populus trichocarpa HOM05D004996 ORTHO05D005844 1.1e-61 241.1 239 51.9
Atru.chr3.332 Acer truncatum HOM05D004996 ORTHO05D005844 5.3e-59 232.3 175 68.0
Os10g0389200 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 6.9e-59 231.9 264 45.5
Hund13537 Selenicereus undatus HOM05D004996 ORTHO05D005844 2.0e-58 230.3 267 46.1
Zm00001eb027950 Zea mays HOM05D004996 ORTHO05D005844 6.5e-57 225.3 244 47.5
HanXRQChr14g0442841 Helianthus annuus HOM05D004996 ORTHO05D005844 1.1e-51 208.0 178 57.9
Hund13538 Selenicereus undatus HOM05D004996 ORTHO05D005844 1.8e-51 207.2 271 42.8
AUR62001931 Chenopodium quinoa HOM05D004996 ORTHO05D005844 6.9e-51 205.3 174 56.3
Pp3c15_3570 Physcomitrium patens HOM05D004996 ORTHO05D005844 1.5e-50 204.1 261 41.4
AagrBONN_evm.TU.Sc2ySwM_368.2728 Anthoceros agrestis HOM05D004996 ORTHO05D005844 7.7e-50 201.8 262 42.7
SMO348G0076 Selaginella moellendorffii HOM05D004996 ORTHO05D005844 5.0e-49 199.1 261 39.8
Mapoly0002s0316 Marchantia polymorpha HOM05D004996 ORTHO05D005844 8.5e-49 198.4 263 42.2
AagrBONN_evm.TU.Sc2ySwM_340.386 Anthoceros agrestis HOM05D004996 ORTHO05D005844 2.1e-47 193.7 263 39.2
Mapoly0007s0155 Marchantia polymorpha HOM05D004996 ORTHO05D005844 1.0e-46 191.4 284 39.1
Os10g0389300 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 2.6e-34 150.2 206 39.8
Dinv39853 Davidia involucrata HOM05D004996 ORTHO05D005844 1.5e-32 144.4 98 70.4
Atru.chr3.333 Acer truncatum HOM05D004996 ORTHO05D005844 3.6e-23 113.2 93 51.6
TPR.G22736 Trifolium pratense HOM05D004996 ORTHO05D005844 3.6e-23 113.2 100 54.0
HPP92_019276 Vanilla planifolia HOM05D004996 ORTHO05D005844 2.3e-22 110.5 120 45.8
Os10g0389100 Oryza sativa ssp. japonica HOM05D004996 ORTHO05D005844 4.4e-21 106.3 207 32.4
Hma1.2p1_0200F.1_g085850 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.8e-20 103.6 66 74.2
Hma1.2p1_2839F.1_g329297 Hydrangea macrophylla HOM05D004996 ORTHO05D005844 2.8e-20 103.6 66 74.2
Mapoly0002s0315 Marchantia polymorpha HOM05D004996 ORTHO05D005844 2.7e-18 97.1 129 41.9
TPR.G22585 Trifolium pratense HOM05D004996 ORTHO05D005844 6.5e-17 92.4 75 58.7
CBR_g39811 Chara braunii HOM05D004996 ORTHO05D005844 5.7e-13 79.3 287 24.7
CBR_g39812 Chara braunii HOM05D004996 ORTHO05D005844 2.8e-12 77.0 196 30.1
CBR_g39828 Chara braunii HOM05D001539 ORTHO05D008140 1.6e-10 71.2 239 27.2


User provided reference genes

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