Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p040870 Quercus lobata HOM05D006615 ORTHO05D007999 2.5e-114 415.6 231 100.0
Haze_15377 Corylus avellana HOM05D006615 ORTHO05D007999 7.5e-95 350.9 227 86.3
TAR625G0931 Trochodendron aralioides HOM05D006615 ORTHO05D007999 2.5e-90 335.9 224 81.2
Nn5g30349 Nelumbo nucifera HOM05D006615 ORTHO05D007999 5.5e-90 334.7 225 83.1
Atru.chr3.300 Acer truncatum HOM05D006615 ORTHO05D007999 7.2e-90 334.3 228 82.9
Gohir.A12G072600 Gossypium hirsutum HOM05D006615 ORTHO05D007999 2.1e-89 332.8 228 82.5
GSVIVG01022099001 Vitis vinifera HOM05D006615 ORTHO05D007999 4.7e-89 331.6 232 72.0
Duzib147G0216 Durio zibethinus HOM05D006615 ORTHO05D007999 1.0e-88 330.5 232 80.2
MD15G1285700 Malus domestica HOM05D006615 ORTHO05D007999 1.0e-88 330.5 227 81.9
Prupe.7G131100 Prunus persica HOM05D006615 ORTHO05D007999 1.0e-88 330.5 223 84.8
COL.COLO4_11446 Corchorus olitorius HOM05D006615 ORTHO05D007999 1.8e-88 329.7 230 80.9
FAN26G2627 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.8e-88 329.7 226 82.7
FAN28G0965 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.8e-88 329.7 227 83.7
FAN23G1998 Fragaria x ananassa HOM05D006615 ORTHO05D007999 2.3e-88 329.3 227 83.3
FvH4_1g16240 Fragaria vesca HOM05D006615 ORTHO05D007999 4.0e-88 328.6 226 82.3
Gohir.A02G156700 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.0e-88 328.6 210 85.2
Gohir.D12G070500 Gossypium hirsutum HOM05D006615 ORTHO05D007999 4.0e-88 328.6 228 77.2
Gorai.008G077500 Gossypium raimondii HOM05D006615 ORTHO05D007999 4.0e-88 328.6 228 77.2
RcHm_v2.0_Chr2g0105951 Rosa chinensis HOM05D006615 ORTHO05D007999 5.2e-88 328.2 226 81.4
MD02G1174700 Malus domestica HOM05D006615 ORTHO05D007999 2.0e-87 326.2 226 82.7
CSS0020579 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 2.6e-87 325.9 225 78.7
Gorai.003G025500 Gossypium raimondii HOM05D006615 ORTHO05D007999 4.4e-87 325.1 210 84.3
Ciclev10026421m.g Citrus clementina HOM05D006615 ORTHO05D007999 7.5e-87 324.3 226 79.6
Thecc.01G059100 Theobroma cacao HOM05D006615 ORTHO05D007999 9.8e-87 323.9 210 86.2
FAN19G1431 Fragaria x ananassa HOM05D006615 ORTHO05D007999 1.7e-86 323.2 226 81.4
Actinidia12040 Actinidia chinensis HOM05D006615 ORTHO05D007999 3.7e-86 322.0 210 76.7
Gohir.D03G024000 Gossypium hirsutum HOM05D006615 ORTHO05D007999 3.7e-86 322.0 210 83.8
TAR381G0796 Trochodendron aralioides HOM05D006615 ORTHO05D007999 8.3e-86 320.9 225 80.0
Manes.12G104500 Manihot esculenta HOM05D006615 ORTHO05D007999 1.1e-85 320.5 226 80.1
ClCG02G012310 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.8e-85 319.7 223 79.4
Sabra05G0110900 Salix brachista HOM05D006615 ORTHO05D007999 2.4e-85 319.3 224 79.5
Sabra07G0040600 Salix brachista HOM05D006615 ORTHO05D007999 7.0e-85 317.8 224 72.3
CiPaw.01G016200 Carya illinoinensis HOM05D006615 ORTHO05D007999 2.7e-84 315.8 210 73.8
Cpa.g.sc55.125 Carica papaya HOM05D006615 ORTHO05D007999 3.5e-84 315.5 222 72.1
vmacro05309 Vaccinium macrocarpon HOM05D006615 ORTHO05D007999 3.5e-84 315.5 224 78.6
Aqoxy5G01194 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 4.5e-84 315.1 223 70.9
CsaV3_2G016460 Cucumis sativus L. HOM05D006615 ORTHO05D007999 1.0e-83 313.9 227 76.2
CSS0005072 Camellia sinensis var. sinensis HOM05D006615 ORTHO05D007999 1.7e-83 313.2 225 69.8
Cfa004036 Carpinus fangiana HOM05D006615 ORTHO05D007999 2.3e-83 312.8 207 84.5
Potri.005G140000 Populus trichocarpa HOM05D006615 ORTHO05D007999 2.3e-83 312.8 224 78.6
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 2.3e-83 312.8 224 79.5
MELO3C020856.2 Cucumis melo HOM05D006615 ORTHO05D007999 6.5e-83 311.2 236 74.2
HanXRQChr09g0263661 Helianthus annuus HOM05D006615 ORTHO05D007999 6.5e-83 311.2 226 77.4
Lalb_Chr16g0378591 Lupinus albus HOM05D006615 ORTHO05D007999 9.5e-82 307.4 207 84.1
Cc07_g06140 Coffea canephora HOM05D006615 ORTHO05D007999 6.1e-81 304.7 223 76.7
Ah.03g145470 Amaranthus hybridus HOM05D006615 ORTHO05D007999 8.0e-81 304.3 208 71.2
AUR62001910 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.3e-80 302.8 219 68.5
THA.LOC104821250 Tarenaya hassleriana HOM05D006615 ORTHO05D007999 4.0e-80 302.0 210 81.9
C07p24600 Brassica napus HOM05D006615 ORTHO05D007999 6.8e-80 301.2 210 80.0
BolC7t42980H Brassica oleracea HOM05D006615 ORTHO05D007999 6.8e-80 301.2 210 80.0
CDE02G1946 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 6.8e-80 301.2 234 72.2
PSO170G0414 Papaver somniferum HOM05D006615 ORTHO05D007999 6.8e-80 301.2 230 65.7
TPR.G26907 Trifolium pratense HOM05D006615 ORTHO05D007999 1.5e-79 300.1 207 73.4
AUR62003898 Chenopodium quinoa HOM05D006615 ORTHO05D007999 2.0e-79 299.7 219 67.6
Lj4C151G8 Lonicera japonica HOM05D006615 ORTHO05D007999 2.0e-79 299.7 211 76.8
Glyma.11G054300 Glycine max HOM05D006615 ORTHO05D007999 2.6e-79 299.3 210 81.4
Sed0009491 Sechium edule HOM05D006615 ORTHO05D007999 2.6e-79 299.3 223 73.5
Dinv26838 Davidia involucrata HOM05D000573 ORTHO05D000425 3.4e-79 298.9 165 87.3
BraA07t29407Z Brassica rapa HOM05D006615 ORTHO05D007999 4.4e-79 298.5 210 79.5
Peaxi162Scf00549g00014 Petunia axillaris HOM05D006615 ORTHO05D007999 4.4e-79 298.5 213 78.9
Sopen02g037800 Solanum pennellii HOM05D006615 ORTHO05D007999 4.4e-79 298.5 209 80.9
MSTRG.2870 Avicennia marina HOM05D006615 ORTHO05D007999 5.7e-79 298.1 224 70.5
Medtr5g016890 Medicago truncatula HOM05D006615 ORTHO05D007999 5.7e-79 298.1 207 80.2
AL8G44220 Arabidopsis lyrata HOM05D006615 ORTHO05D007999 7.5e-79 297.7 215 78.6
CAN.G370.40 Capsicum annuum HOM05D006615 ORTHO05D007999 7.5e-79 297.7 209 80.4
Lsat_1_v5_gn_4_164980 Lactuca sativa HOM05D006615 ORTHO05D007999 7.5e-79 297.7 222 75.2
Lj2g0018871 Lotus japonicus HOM05D006615 ORTHO05D007999 7.5e-79 297.7 205 82.9
PSO210G0040 Papaver somniferum HOM05D006615 ORTHO05D007999 7.5e-79 297.7 230 65.2
Hund16348 Selenicereus undatus HOM05D006615 ORTHO05D007999 7.5e-79 297.7 272 59.2
Solyc02g093220.3 Solanum lycopersicum HOM05D006615 ORTHO05D007999 7.5e-79 297.7 209 80.4
PGSC0003DMG400004030 Solanum tuberosum HOM05D006615 ORTHO05D007999 7.5e-79 297.7 209 80.4
BcaB02g09933 Brassica carinata HOM05D006615 ORTHO05D007999 9.8e-79 297.4 210 79.5
Carub.0008s2737 Capsella rubella HOM05D006615 ORTHO05D007999 9.8e-79 297.4 210 80.0
CDE04G2757 Ceratophyllum demersum HOM05D006615 ORTHO05D007999 9.8e-79 297.4 223 74.4
Psat2g167840 Pisum sativum HOM05D006615 ORTHO05D007999 9.8e-79 297.4 207 72.9
Migut.H00418 Erythranthe guttata HOM05D006615 ORTHO05D007999 1.3e-78 297.0 224 75.0
A07p16820 Brassica napus HOM05D006615 ORTHO05D007999 1.7e-78 296.6 210 79.0
Thhalv10004869m.g Eutrema salsugineum HOM05D006615 ORTHO05D007999 2.2e-78 296.2 210 78.6
Sp2g29550 Schrenkiella parvula HOM05D006615 ORTHO05D007999 3.7e-78 295.4 210 79.0
Sc03g0001700 Simmondsia chinensis HOM05D006615 ORTHO05D007999 3.7e-78 295.4 214 67.8
AT5G67140 Arabidopsis thaliana HOM05D006615 ORTHO05D007999 6.3e-78 294.7 215 78.6
MELO3C020857.2 Cucumis melo HOM05D006615 ORTHO05D007999 8.3e-78 294.3 216 76.4
Glyma.01G187800 Glycine max HOM05D006615 ORTHO05D007999 2.4e-77 292.7 216 79.2
arahy.Tifrunner.gnm1.ann1.XJ9ES7 Arachis hypogaea HOM05D006615 ORTHO05D007999 3.1e-77 292.4 207 81.6
Nitab4.5_0002694g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 5.4e-77 291.6 213 77.0
Oeu014828.1 Olea europaea HOM05D006615 ORTHO05D007999 5.4e-77 291.6 224 72.3
Oeu049899.1 Olea europaea HOM05D006615 ORTHO05D007999 5.4e-77 291.6 213 76.5
Phvul.002G017400 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 5.4e-77 291.6 210 79.0
TWI09G1033 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 5.4e-77 291.6 217 67.3
CARHR280510 Cardamine hirsuta HOM05D006615 ORTHO05D007999 7.0e-77 291.2 210 78.1
Hma1.2p1_0670F.1_g200450 Hydrangea macrophylla HOM05D006615 ORTHO05D007999 7.0e-77 291.2 225 67.1
CsaV3_2G016470 Cucumis sativus L. HOM05D006615 ORTHO05D007999 2.0e-76 289.7 216 75.5
arahy.Tifrunner.gnm1.ann1.8K3JW9 Arachis hypogaea HOM05D006615 ORTHO05D007999 2.7e-76 289.3 207 81.2
VMungo1215G1750 Vigna mungo HOM05D006615 ORTHO05D007999 1.0e-75 287.3 210 80.0
Atru.chr3.288 Acer truncatum HOM05D006615 ORTHO05D007999 1.7e-75 286.6 201 81.1
ATR0800G077 Amborella trichopoda HOM05D006615 ORTHO05D007999 1.7e-75 286.6 225 74.7
Aa31LG1G15650 Aethionema arabicum HOM05D006615 ORTHO05D007999 2.3e-75 286.2 210 76.2
Nitab4.5_0002765g0020 Nicotiana tabacum HOM05D006615 ORTHO05D007999 2.3e-75 286.2 213 77.0
HPP92_026439 Vanilla planifolia HOM05D006615 ORTHO05D007999 1.5e-74 283.5 207 78.3
DCAR_010880 Daucus carota HOM05D006615 ORTHO05D007999 2.1e-73 279.6 223 72.2
Lalb_Chr05g0213321 Lupinus albus HOM05D006615 ORTHO05D007999 2.1e-73 279.6 207 68.1
ECA232G2507 Erigeron canadensis HOM05D002761 ORTHO05D003351 8.0e-73 277.7 165 78.8
Eucgr.H01687 Eucalyptus grandis HOM05D006615 ORTHO05D007999 2.2e-70 269.6 208 63.0
Oeu017456.1 Olea europaea HOM05D006615 ORTHO05D007999 1.1e-69 267.3 224 69.6
CANSAT01G0297 Cannabis sativa HOM05D006615 ORTHO05D007999 3.6e-65 252.3 227 61.7
SEGI_10636 Sequoiadendron giganteum HOM05D006615 ORTHO05D007999 5.8e-63 245.0 204 66.2
Actinidia36482 Actinidia chinensis HOM05D006615 ORTHO05D007999 1.7e-62 243.4 200 65.5
Os06g0166000 Oryza sativa ssp. japonica HOM05D006615 ORTHO05D007999 3.7e-62 242.3 208 57.7
Zm00001eb375600 Zea mays HOM05D006615 ORTHO05D007999 1.2e-60 237.3 208 57.7
SGA_v2.0_scaffold15G07326 Striga asiatica HOM05D006615 ORTHO05D007999 6.2e-57 224.9 224 64.7
unitig_748.g8604 Utricularia gibba HOM05D002191 ORTHO05D007999 2.1e-49 199.9 164 60.4
Aqoxy6G01271 Aquilegia oxysepala HOM05D006615 ORTHO05D007999 3.6e-49 199.1 225 60.4
Pp3c7_15700 Physcomitrium patens HOM05D006615 ORTHO05D007999 1.4e-48 197.2 160 58.1
Mapoly0005s0095 Marchantia polymorpha HOM05D006615 ORTHO05D007999 2.9e-46 189.5 171 53.8
AagrBONN_evm.TU.Sc2ySwM_344.5234 Anthoceros agrestis HOM05D006615 ORTHO05D007999 4.6e-44 182.2 218 52.8
TWI73G1298 Tripterygium wilfordii HOM05D006615 ORTHO05D007999 4.3e-42 175.6 134 64.2
Potri.007G045601 Populus trichocarpa HOM05D006615 ORTHO05D007999 4.6e-36 155.6 97 80.4
SMO164G0246 Selaginella moellendorffii HOM05D006615 ORTHO05D007999 7.8e-36 154.8 163 47.2
MSTRG.3434 Avicennia marina HOM05D006615 ORTHO05D007999 6.0e-20 102.1 91 78.0
ClCG02G012330 Citrullus lanatus HOM05D006615 ORTHO05D007999 1.1e-18 97.8 81 59.3
Phvul.008G146300 Phaseolus vulgaris HOM05D006615 ORTHO05D007999 4.6e-12 75.9 45 73.3
Aqoxy4G02446 Aquilegia oxysepala HOM05D001818 ORTHO05D001780 4.1e-08 62.8 71 36.6
EL10Ac6g15726 Beta vulgaris HOM05D006615 ORTHO05D007999 1.2e-07 61.2 93 41.9
BcaC07g42481 Brassica carinata HOM05D000710 ORTHO05D000336 1.5e-07 60.8 161 28.6
FAN23G0561 Fragaria x ananassa HOM05D000710 ORTHO05D000336 1.0e-06 58.2 165 27.9
FvH4_1g14800 Fragaria vesca HOM05D000710 ORTHO05D000336 1.3e-06 57.8 167 29.3
Thhalv10009631m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 1.7e-06 57.4 164 27.4
Thhalv10023830m.g Eutrema salsugineum HOM05D000710 ORTHO05D000336 2.2e-06 57.0 154 27.9
FAN19G1902 Fragaria x ananassa HOM05D000710 ORTHO05D000336 2.2e-06 57.0 165 28.5
FAN20G2926 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.8e-06 56.2 108 34.3
FAN15G1401 Fragaria x ananassa HOM05D002813 ORTHO05D003203 6.5e-06 55.5 107 33.6
Phvul.003G097600 Phaseolus vulgaris HOM05D002762 ORTHO05D004643 6.5e-06 55.5 105 33.3
RcHm_v2.0_Chr3g0487451 Rosa chinensis HOM05D032618 ORTHO05D007999 6.5e-06 55.5 54 50.0
Sc03g0001840 Simmondsia chinensis HOM05D001905 ORTHO05D001820 6.5e-06 55.5 158 28.5
Carub.0006s3338 Capsella rubella HOM05D000710 ORTHO05D000336 8.5e-06 55.1 160 30.0
FvH4_2g32511 Fragaria vesca HOM05D002813 ORTHO05D003203 8.5e-06 55.1 75 36.0
FAN24G2117 Fragaria x ananassa HOM05D002813 ORTHO05D003203 8.5e-06 55.1 75 36.0


User provided reference genes

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