Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 5.7e-200 700.7 344 100.0
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.9e-175 618.6 344 87.2
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 5.4e-174 614.4 344 87.2
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 3.9e-172 608.2 374 81.3
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 3.6e-162 575.1 344 80.8
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.3e-159 566.6 344 78.5
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 4.1e-158 561.6 344 77.6
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 5.4e-158 561.2 344 77.6
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.6e-157 559.7 344 77.3
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 1.6e-157 559.7 344 77.0
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 4.6e-157 558.1 344 79.7
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.3e-156 555.8 345 77.4
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 1.1e-155 553.5 344 77.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 1.1e-155 553.5 343 77.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.5e-155 552.4 344 76.5
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 3.3e-155 552.0 345 77.1
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 7.3e-155 550.8 348 75.9
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 2.1e-154 549.3 344 75.6
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.1e-154 549.3 348 77.0
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.1e-153 547.0 348 76.7
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 2.4e-153 545.8 348 77.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 7.6e-152 540.8 354 76.3
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 2.2e-151 539.3 354 76.6
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.9e-151 538.9 347 77.2
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 1.1e-150 537.0 347 77.2
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 9.3e-150 533.9 348 75.6
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.7e-149 532.3 348 76.1
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 2.7e-149 532.3 344 74.7
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.7e-149 532.3 345 75.4
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 3.5e-149 531.9 373 70.2
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 3.5e-149 531.9 344 73.5
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 6.0e-149 531.2 345 76.5
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 7.8e-149 530.8 347 75.2
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 5.1e-148 528.1 331 77.3
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 3.3e-147 525.4 343 73.5
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 5.6e-147 524.6 339 74.6
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.6e-146 523.1 343 72.0
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 1.6e-146 523.1 344 71.2
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.6e-146 523.1 344 75.9
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.8e-146 522.3 342 75.4
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 2.8e-146 522.3 346 71.7
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 2.8e-146 522.3 344 70.9
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 6.2e-146 521.2 345 73.3
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 8.1e-146 520.8 344 74.1
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 8.1e-146 520.8 344 73.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 1.4e-145 520.0 344 71.2
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 3.1e-145 518.8 347 71.8
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 3.1e-145 518.8 305 80.3
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 6.9e-145 517.7 344 72.1
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.0e-144 516.2 344 75.0
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 2.0e-144 516.2 349 71.9
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.0e-144 516.2 345 71.0
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.2e-143 512.7 348 71.3
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 4.9e-143 511.5 360 69.4
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 8.4e-143 510.8 344 69.8
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 7.1e-142 507.7 352 71.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 3.5e-141 505.4 315 75.2
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 4.6e-141 505.0 339 74.9
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 6.0e-141 504.6 345 73.0
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 6.0e-141 504.6 345 71.9
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.3e-140 503.4 378 66.1
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.3e-140 502.7 339 72.3
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 3.9e-140 501.9 345 71.9
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 8.7e-140 500.7 346 72.3
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 8.7e-140 500.7 346 72.3
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 8.7e-140 500.7 339 72.6
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 1.1e-139 500.4 303 79.2
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 5.6e-139 498.0 346 72.0
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.1e-137 492.3 343 70.8
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 4.0e-137 491.9 304 78.6
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 3.4e-136 488.8 345 67.0
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 5.8e-136 488.0 344 69.8
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 1.3e-135 486.9 350 70.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.3e-135 486.9 347 70.0
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 2.2e-135 486.1 346 68.5
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 4.2e-134 481.9 305 74.4
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 6.0e-133 478.0 345 68.4
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 1.0e-132 477.2 292 79.5
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.8e-132 476.5 326 70.2
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 7.4e-131 471.1 330 69.4
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 2.8e-130 469.2 332 68.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 4.8e-130 468.4 330 69.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.1e-129 465.7 330 68.8
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 3.1e-129 465.7 330 69.4
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 5.3e-129 464.9 330 68.8
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.7e-127 459.9 299 73.9
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 2.9e-127 459.1 341 65.7
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 3.8e-127 458.8 330 67.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 6.5e-127 458.0 309 72.2
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 1.1e-126 457.2 360 64.2
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 3.2e-126 455.7 284 77.8
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 7.1e-126 454.5 349 63.6
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 1.2e-125 453.8 315 69.8
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 6.0e-125 451.4 342 63.7
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.8e-124 449.9 305 69.2
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 1.1e-123 447.2 278 74.8
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.5e-123 446.0 340 63.5
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 5.7e-123 444.9 285 73.0
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 9.6e-123 444.1 343 63.6
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 2.8e-122 442.6 306 68.6
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 4.8e-122 441.8 307 68.4
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 8.2e-122 441.0 278 75.2
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 1.4e-121 440.3 325 64.6
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 3.4e-120 435.6 329 63.8
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 5.8e-120 434.9 282 74.1
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.7e-119 433.3 342 62.6
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 6.5e-119 431.4 329 63.5
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 6.5e-119 431.4 329 63.5
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.4e-118 430.3 341 62.2
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.9e-118 429.9 312 65.1
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 2.5e-118 429.5 323 63.5
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.7e-117 426.0 348 61.5
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 6.1e-117 424.9 312 64.4
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.7e-115 418.3 310 64.5
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 5.3e-113 411.8 340 62.1
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 6.9e-113 411.4 312 63.1
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 1.0e-111 407.5 333 62.5
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.9e-111 406.0 261 73.2
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.9e-110 403.3 384 56.0
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 2.7e-109 399.4 361 59.0
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 1.8e-108 396.7 330 61.5
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 2.5e-107 392.9 360 57.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 7.4e-107 391.3 282 65.2
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 1.3e-106 390.6 360 57.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 9.1e-105 384.4 344 59.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 5.9e-104 381.7 250 73.6
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.4e-102 377.1 345 58.6
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 1.4e-100 370.5 340 55.6
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.0e-99 366.7 303 56.8
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 3.7e-98 362.5 310 54.8
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 3.2e-94 349.4 302 54.6
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 9.1e-89 331.3 331 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 7.7e-88 328.2 309 53.1
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 3.8e-87 325.9 235 66.0
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 9.4e-86 321.2 335 49.6
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.2e-85 320.9 229 68.6
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 4.4e-83 312.4 281 56.2
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.4e-81 307.4 233 65.7
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 2.9e-79 299.7 212 67.9
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 1.5e-78 297.4 317 54.3
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.6e-77 292.7 163 83.4
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.2e-59 234.6 162 66.0
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.2e-59 234.6 162 66.0
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 3.4e-59 233.0 139 79.9
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 6.4e-50 202.2 112 84.8
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 8.1e-45 185.3 112 77.7
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 5.2e-44 182.6 347 32.9
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.6e-43 178.7 112 77.7
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 1.0e-39 168.3 312 36.5
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 8.9e-36 155.2 164 51.8
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.3e-31 140.6 126 57.1
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.1e-29 134.0 326 28.8
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 4.9e-26 122.9 175 42.3
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 4.2e-25 119.8 86 67.4
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 7.1e-25 119.0 362 30.9
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 2.1e-21 107.5 280 29.3
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 7.1e-17 92.4 105 45.7
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 4.3e-14 83.2 116 44.8


User provided reference genes

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