Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p040316 Quercus lobata HOM05D000018 ORTHO05D005005 7.7e-100 367.1 176 100.0
QL06p040443 Quercus lobata HOM05D000018 ORTHO05D005005 3.0e-51 205.7 155 68.4
Haze_15365 Corylus avellana HOM05D000018 ORTHO05D005005 1.4e-45 186.8 154 61.7
CiPaw.01G014500 Carya illinoinensis HOM05D000018 ORTHO05D005005 4.1e-45 185.3 154 61.0
Prupe.6G230800 Prunus persica HOM05D000018 ORTHO05D005005 7.3e-42 174.5 158 58.9
Sabra07G0042000 Salix brachista HOM05D000018 ORTHO05D005005 1.6e-41 173.3 156 57.7
Atru.chr3.270 Acer truncatum HOM05D000018 ORTHO05D005005 3.6e-41 172.2 156 58.3
vmacro17965 Vaccinium macrocarpon HOM05D000018 ORTHO05D005005 4.7e-41 171.8 156 58.3
Potri.007G047100 Populus trichocarpa HOM05D000018 ORTHO05D005005 2.3e-40 169.5 156 56.4
Dinv30021 Davidia involucrata HOM05D000018 ORTHO05D005005 3.1e-40 169.1 156 57.7
Rhsim08G0098500 Rhododendron simsii HOM05D000018 ORTHO05D005005 5.2e-40 168.3 156 56.4
Eucgr.I00887 Eucalyptus grandis HOM05D000018 ORTHO05D005005 8.9e-40 167.5 157 56.7
arahy.Tifrunner.gnm1.ann1.S9I11U Arachis hypogaea HOM05D000018 ORTHO05D005005 1.5e-39 166.8 155 56.8
CANSAT25G0456 Cannabis sativa HOM05D000018 ORTHO05D005005 1.5e-39 166.8 155 57.4
CANSAT25G2708 Cannabis sativa HOM05D000018 ORTHO05D005005 1.5e-39 166.8 155 57.4
FAN26G0536 Fragaria x ananassa HOM05D000018 ORTHO05D005005 1.5e-39 166.8 157 58.6
MD02G1177200 Malus domestica HOM05D000018 ORTHO05D005005 1.5e-39 166.8 156 55.1
PGR004G0264 Punica granatum HOM05D000018 ORTHO05D005005 2.0e-39 166.4 157 54.8
Thecc.01G061600 Theobroma cacao HOM05D000018 ORTHO05D005005 2.6e-39 166.0 160 56.2
Gohir.D10G097000 Gossypium hirsutum HOM05D000018 ORTHO05D005005 3.4e-39 165.6 156 55.1
arahy.Tifrunner.gnm1.ann1.2NJ3DY Arachis hypogaea HOM05D000018 ORTHO05D005005 4.4e-39 165.2 155 56.1
ClCG02G008010 Citrullus lanatus HOM05D000018 ORTHO05D005005 4.4e-39 165.2 155 56.8
Hma1.2p1_0017F.1_g011770 Hydrangea macrophylla HOM05D000018 ORTHO05D005005 4.4e-39 165.2 156 55.8
Gohir.A10G091100 Gossypium hirsutum HOM05D000018 ORTHO05D005005 7.5e-39 164.5 156 55.1
FvH4_1g16460 Fragaria vesca HOM05D000018 ORTHO05D005005 1.3e-38 163.7 157 56.7
RcHm_v2.0_Chr2g0106341 Rosa chinensis HOM05D000018 ORTHO05D005005 1.3e-38 163.7 157 56.7
Ciclev10026055m.g Citrus clementina HOM05D000018 ORTHO05D005005 1.7e-38 163.3 155 56.8
Eucgr.I00885 Eucalyptus grandis HOM05D000018 ORTHO05D005005 1.7e-38 163.3 157 55.4
Cc07_g06270 Coffea canephora HOM05D000018 ORTHO05D005005 3.7e-38 162.2 158 53.8
Gorai.011G106500 Gossypium raimondii HOM05D000018 ORTHO05D005005 3.7e-38 162.2 156 54.5
MELO3C024783.2 Cucumis melo HOM05D000018 ORTHO05D005005 6.4e-38 161.4 155 55.5
Peaxi162Scf00549g00224 Petunia axillaris HOM05D000018 ORTHO05D005005 6.4e-38 161.4 155 52.9
Thecc.01G061500 Theobroma cacao HOM05D000018 ORTHO05D005005 6.4e-38 161.4 156 54.5
GSVIVG01022069001 Vitis vinifera HOM05D000018 ORTHO05D005005 6.4e-38 161.4 155 54.8
CsaV3_2G035650 Cucumis sativus L. HOM05D000018 ORTHO05D005005 1.4e-37 160.2 155 54.8
TWI09G0523 Tripterygium wilfordii HOM05D000018 ORTHO05D005005 1.4e-37 160.2 155 54.8
CAN.G370.30 Capsicum annuum HOM05D000018 ORTHO05D005005 1.9e-37 159.8 156 53.2
Glyma.17G169100 Glycine max HOM05D000018 ORTHO05D005005 2.4e-37 159.5 154 55.2
Nitab4.5_0001603g0090 Nicotiana tabacum HOM05D000018 ORTHO05D005005 3.2e-37 159.1 155 54.2
VMungo0251G1013 Vigna mungo HOM05D000018 ORTHO05D005005 3.2e-37 159.1 154 55.2
Carub.0005s1653 Capsella rubella HOM05D000018 ORTHO05D005005 5.4e-37 158.3 154 55.8
SGA_v2.0_scaffold15G07351 Striga asiatica HOM05D000018 ORTHO05D005005 5.4e-37 158.3 158 52.5
TAR381G1021 Trochodendron aralioides HOM05D000018 ORTHO05D005005 7.1e-37 157.9 157 54.1
AL5G30340 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 9.2e-37 157.5 154 55.8
MSTRG.23724 Avicennia marina HOM05D000018 ORTHO05D005005 9.2e-37 157.5 158 51.9
Nitab4.5_0000929g0050 Nicotiana tabacum HOM05D000018 ORTHO05D005005 9.2e-37 157.5 155 53.5
Oeu014804.1 Olea europaea HOM05D000018 ORTHO05D005005 1.2e-36 157.1 156 51.3
CARHR159540 Cardamine hirsuta HOM05D000018 ORTHO05D005005 2.7e-36 156.0 154 55.2
AT3G50210 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 3.5e-36 155.6 154 55.2
Lj4g0011269 Lotus japonicus HOM05D000018 ORTHO05D005005 3.5e-36 155.6 154 54.5
PGSC0003DMG401024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 3.5e-36 155.6 156 52.6
Solyc02g093080.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 4.6e-36 155.2 156 53.8
CANSAT25G3128 Cannabis sativa HOM05D000018 ORTHO05D005005 1.0e-35 154.1 154 54.5
CANSAT25G3356 Cannabis sativa HOM05D000018 ORTHO05D005005 1.0e-35 154.1 154 54.5
Thhalv10010533m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 1.0e-35 154.1 154 53.9
Manes.13G119900 Manihot esculenta HOM05D000018 ORTHO05D005005 1.3e-35 153.7 171 49.7
Nn5g30378 Nelumbo nucifera HOM05D000018 ORTHO05D005005 1.7e-35 153.3 156 53.8
THA.LOC104821246 Tarenaya hassleriana HOM05D000018 ORTHO05D005005 1.7e-35 153.3 155 54.8
Ca_22132_v3 Cicer arietinum L. HOM05D000018 ORTHO05D005005 2.3e-35 152.9 153 55.6
Lalb_Chr05g0226231 Lupinus albus HOM05D000018 ORTHO05D005005 2.3e-35 152.9 154 52.6
Atru.chr3.269 Acer truncatum HOM05D000018 ORTHO05D005005 3.0e-35 152.5 157 51.6
HanXRQChr15g0473621 Helianthus annuus HOM05D000018 ORTHO05D005005 3.0e-35 152.5 156 53.8
Sed0024839 Sechium edule HOM05D000018 ORTHO05D005005 3.0e-35 152.5 155 53.5
Actinidia03802 Actinidia chinensis HOM05D000018 ORTHO05D005005 3.9e-35 152.1 156 52.6
BcaB01g00633 Brassica carinata HOM05D000018 ORTHO05D005005 5.1e-35 151.8 173 48.6
Phvul.003G241200 Phaseolus vulgaris HOM05D000018 ORTHO05D005005 6.6e-35 151.4 158 53.2
SalBow1G4046 Salvia bowleyana HOM05D000018 ORTHO05D005005 6.6e-35 151.4 158 50.6
PSO170G4200 Papaver somniferum HOM05D000018 ORTHO05D005005 8.6e-35 151.0 156 51.9
Sopen02g037650 Solanum pennellii HOM05D000018 ORTHO05D005005 8.6e-35 151.0 156 51.9
Migut.H00408 Erythranthe guttata HOM05D000018 ORTHO05D005005 1.1e-34 150.6 155 49.7
PSO210G4274 Papaver somniferum HOM05D000018 ORTHO05D005005 1.5e-34 150.2 156 51.3
Gorai.003G026400 Gossypium raimondii HOM05D000018 ORTHO05D005005 1.9e-34 149.8 156 52.6
ECA246G3867 Erigeron canadensis HOM05D000018 ORTHO05D005005 2.5e-34 149.4 156 50.6
AUR62003920 Chenopodium quinoa HOM05D000018 ORTHO05D005005 4.3e-34 148.7 160 50.6
Sopen02g037640 Solanum pennellii HOM05D000018 ORTHO05D005005 4.3e-34 148.7 155 51.0
Psat4g085080 Pisum sativum HOM05D000018 ORTHO05D005005 5.6e-34 148.3 153 52.3
Solyc02g093070.3 Solanum lycopersicum HOM05D000018 ORTHO05D005005 5.6e-34 148.3 155 51.6
Aqoxy5G01174 Aquilegia oxysepala HOM05D000018 ORTHO05D005005 9.5e-34 147.5 156 51.3
Lsat_1_v5_gn_3_90240 Lactuca sativa HOM05D000018 ORTHO05D005005 9.5e-34 147.5 157 52.9
BcaC07g39481 Brassica carinata HOM05D000018 ORTHO05D005005 1.2e-33 147.1 154 51.9
A09p43270 Brassica napus HOM05D000018 ORTHO05D005005 1.2e-33 147.1 154 50.6
C08p25260 Brassica napus HOM05D000018 ORTHO05D005005 1.2e-33 147.1 154 51.9
BolC8t50148H Brassica oleracea HOM05D000018 ORTHO05D005005 1.2e-33 147.1 154 51.9
BraA09t39797Z Brassica rapa HOM05D000018 ORTHO05D005005 1.2e-33 147.1 154 50.6
Gohir.A02G155800 Gossypium hirsutum HOM05D000018 ORTHO05D005005 2.1e-33 146.4 156 51.9
Sp5g11950 Schrenkiella parvula HOM05D000018 ORTHO05D005005 2.1e-33 146.4 154 51.3
Aa31LG4G18500 Aethionema arabicum HOM05D000018 ORTHO05D005005 2.4e-32 142.9 156 53.2
HPP92_015821 Vanilla planifolia HOM05D000018 ORTHO05D005005 4.0e-32 142.1 155 51.0
PGSC0003DMG402024988 Solanum tuberosum HOM05D000018 ORTHO05D005005 5.2e-32 141.7 155 50.3
Thhalv10010531m.g Eutrema salsugineum HOM05D000018 ORTHO05D005005 8.9e-32 141.0 152 51.3
Os09g0245500 Oryza sativa ssp. japonica HOM05D000018 ORTHO05D005005 5.8e-31 138.3 158 50.6
Cpa.g.sc55.109 Carica papaya HOM05D000018 ORTHO05D005005 7.6e-31 137.9 149 51.0
BcaB01g00689 Brassica carinata HOM05D000018 ORTHO05D005005 9.9e-31 137.5 152 50.7
BcaC07g39426 Brassica carinata HOM05D000018 ORTHO05D005005 1.7e-30 136.7 152 50.0
C08p24650 Brassica napus HOM05D000018 ORTHO05D005005 1.7e-30 136.7 152 50.0
BolC8t50080H Brassica oleracea HOM05D000018 ORTHO05D005005 1.7e-30 136.7 152 50.0
AUR62038233 Chenopodium quinoa HOM05D000018 ORTHO05D005005 2.9e-30 136.0 149 51.7
Thecc.01G061400 Theobroma cacao HOM05D000018 ORTHO05D005005 4.9e-30 135.2 157 47.1
CARHR158650 Cardamine hirsuta HOM05D000018 ORTHO05D005005 8.4e-30 134.4 152 50.7
QL06p040449 Quercus lobata HOM05D000018 ORTHO05D005005 1.1e-29 134.0 166 49.4
ATR0724G007 Amborella trichopoda HOM05D000018 ORTHO05D005005 1.9e-29 133.3 156 46.8
A06p18070 Brassica napus HOM05D000018 ORTHO05D005005 1.9e-29 133.3 152 49.3
BraA06t24897Z Brassica rapa HOM05D000018 ORTHO05D005005 1.9e-29 133.3 152 49.3
FAN28G0683 Fragaria x ananassa HOM05D000018 ORTHO05D005005 2.4e-29 132.9 154 48.1
unitig_736.g22392 Utricularia gibba HOM05D000018 ORTHO05D005005 2.4e-29 132.9 159 46.5
A01p24610 Brassica napus HOM05D000018 ORTHO05D005005 3.2e-29 132.5 152 49.3
BraA01t02372Z Brassica rapa HOM05D000018 ORTHO05D005005 3.2e-29 132.5 152 49.3
AT3G49630 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 5.4e-29 131.7 152 50.0
CSS0027842 Camellia sinensis var. sinensis HOM05D000018 ORTHO05D005005 5.4e-29 131.7 114 58.8
Atru.chr3.273 Acer truncatum HOM05D000018 ORTHO05D005005 9.2e-29 131.0 158 45.6
AL5G29480 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 1.2e-28 130.6 152 47.4
AL8G22460 Arabidopsis lyrata HOM05D000018 ORTHO05D005005 1.2e-28 130.6 152 47.4
AT3G49620 Arabidopsis thaliana HOM05D000018 ORTHO05D005005 2.1e-28 129.8 152 47.4
SEGI_14288 Sequoiadendron giganteum HOM05D000018 ORTHO05D005005 6.0e-28 128.3 175 43.4
TPR.G14588 Trifolium pratense HOM05D000018 ORTHO05D005005 6.0e-28 128.3 141 51.8
Carub.0005s1595 Capsella rubella HOM05D000018 ORTHO05D005005 7.8e-28 127.9 151 47.7
Duzib147G1136 Durio zibethinus HOM05D000018 ORTHO05D005005 1.3e-27 127.1 163 46.0
Lj4C155T10 Lonicera japonica HOM05D000018 ORTHO05D005005 6.6e-27 124.8 155 45.2
Carub.0005s1596 Capsella rubella HOM05D000018 ORTHO05D005005 1.5e-26 123.6 152 46.7
COL.COLO4_11462 Corchorus olitorius HOM05D000018 ORTHO05D005005 2.5e-26 122.9 155 43.9
SalBow1G7116 Salvia bowleyana HOM05D000018 ORTHO05D005005 2.5e-26 122.9 158 43.0
SMO347G0618 Selaginella moellendorffii HOM05D000018 ORTHO05D005005 2.5e-26 122.9 159 42.8
Mapoly0011s0097 Marchantia polymorpha HOM05D000018 ORTHO05D005005 6.2e-25 118.2 161 39.8
AagrBONN_evm.TU.Sc2ySwM_117.288 Anthoceros agrestis HOM05D000018 ORTHO05D005005 1.8e-24 116.7 158 42.4
Sc03g0001770 Simmondsia chinensis HOM05D000018 ORTHO05D005005 5.2e-24 115.2 156 41.7
EL10Ac6g15706 Beta vulgaris HOM05D000018 ORTHO05D005005 4.4e-23 112.1 164 39.0
CAN.G225.15 Capsicum annuum HOM05D000070 ORTHO05D005005 4.4e-23 112.1 159 41.5
Zm00001eb418230 Zea mays HOM05D000018 ORTHO05D005005 9.9e-23 110.9 160 41.9
Gohir.D03G024875 Gossypium hirsutum HOM05D000018 ORTHO05D005005 1.1e-21 107.5 113 51.3
Pp3c21_1290 Physcomitrium patens HOM05D000018 ORTHO05D005005 1.1e-21 107.5 153 40.5
BcaB05g23136 Brassica carinata HOM05D000018 ORTHO05D005005 4.2e-21 105.5 155 42.6
CDE02G2246 Ceratophyllum demersum HOM05D000018 ORTHO05D005005 4.6e-20 102.1 125 47.2
AagrBONN_evm.TU.Sc2ySwM_344.2288 Anthoceros agrestis HOM05D000018 ORTHO05D005005 1.6e-17 93.6 107 45.8
Nitab4.5_0000070g0220 Nicotiana tabacum HOM05D000018 ORTHO05D005005 9.9e-15 84.3 74 54.1
Zm00001eb226150 Zea mays HOM05D000018 ORTHO05D005005 1.3e-14 84.0 157 36.9
MD15G1287100 Malus domestica HOM05D000018 ORTHO05D005005 8.4e-14 81.3 163 37.4
CARHR158660 Cardamine hirsuta HOM05D000018 ORTHO05D005005 3.2e-13 79.3 85 49.4
Hma1.2p1_0670F.1_g200370 Hydrangea macrophylla HOM05D000018 ORTHO05D005005 6.0e-12 75.1 107 42.1
AUR62038234 Chenopodium quinoa HOM05D000018 ORTHO05D005005 7.9e-12 74.7 73 49.3
HPP92_015812 Vanilla planifolia HOM05D000018 ORTHO05D005005 7.9e-12 74.7 73 50.7
MBI16_g26807_MAGBIO Magnolia biondii HOM05D000018 ORTHO05D005005 1.5e-10 70.5 77 50.6
CAN.G26.26 Capsicum annuum HOM05D000018 ORTHO05D005005 2.5e-10 69.7 81 45.7
Sp5g12480 Schrenkiella parvula HOM05D000018 ORTHO05D005005 5.6e-10 68.6 71 50.7
Cc07_g06300 Coffea canephora HOM05D000018 ORTHO05D005005 1.3e-09 67.4 63 52.4
COL.COLO4_11463 Corchorus olitorius HOM05D000018 ORTHO05D005005 1.1e-08 64.3 74 47.3
FAN19G2018 Fragaria x ananassa HOM05D000018 ORTHO05D005005 2.4e-08 63.2 101 39.6
ATR0057G089 Amborella trichopoda HOM05D001438 ORTHO05D001336 1.5e-07 60.5 129 32.6
Cre10.g466700 Chlamydomonas reinhardtii HOM05D001438 ORTHO05D001336 2.0e-07 60.1 110 33.6
Lalb_Chr22g0352581 Lupinus albus HOM05D001438 ORTHO05D001336 2.0e-07 60.1 156 31.4
FAN28G2794 Fragaria x ananassa HOM05D001438 ORTHO05D001336 2.6e-07 59.7 137 31.4
FvH4_1g06010 Fragaria vesca HOM05D001438 ORTHO05D001336 3.4e-07 59.3 137 29.9
FAN19G2069 Fragaria x ananassa HOM05D001438 ORTHO05D001336 3.4e-07 59.3 137 29.9
Potri.018G086800 Populus trichocarpa HOM05D001438 ORTHO05D001336 3.4e-07 59.3 158 31.0
MCO13G174 Micromonas commoda HOM05D001438 ORTHO05D005005 4.5e-07 58.9 128 32.0
PRCOL_00004353 Prasinoderma coloniale HOM05D000018 ORTHO05D005005 4.5e-07 58.9 161 31.1
Sabra18G0075100 Salix brachista HOM05D001438 ORTHO05D001336 4.5e-07 58.9 157 31.2
Thhalv10001822m.g Eutrema salsugineum HOM05D001438 ORTHO05D001336 5.8e-07 58.5 149 30.2
FAN26G0035 Fragaria x ananassa HOM05D001438 ORTHO05D001336 5.8e-07 58.5 137 29.9
FAN26G3409 Fragaria x ananassa HOM05D001438 ORTHO05D001336 5.8e-07 58.5 137 29.9
AT1G35190 Arabidopsis thaliana HOM05D001438 ORTHO05D001336 1.3e-06 57.4 149 29.5
Zm00001eb051400 Zea mays HOM05D000018 ORTHO05D001172 1.3e-06 57.4 131 29.0
Cc04_g12880 Coffea canephora HOM05D000018 ORTHO05D001440 1.7e-06 57.0 150 29.3
Duzib068G0243 Durio zibethinus HOM05D001438 ORTHO05D001336 1.7e-06 57.0 131 30.5
MD02G1064900 Malus domestica HOM05D001438 ORTHO05D001336 1.7e-06 57.0 136 32.4
EL10Ac8g18391 Beta vulgaris HOM05D001438 ORTHO05D001336 2.2e-06 56.6 156 28.2
Manes.03G026000 Manihot esculenta HOM05D001438 ORTHO05D001336 2.2e-06 56.6 156 31.4
Dinv30203 Davidia involucrata HOM05D000018 ORTHO05D001440 3.8e-06 55.8 161 27.3
PGR142G3394 Punica granatum HOM05D001438 ORTHO05D001336 3.8e-06 55.8 109 33.0
Hund13905 Selenicereus undatus HOM05D000018 ORTHO05D005005 3.8e-06 55.8 26 88.5
AL1G49900 Arabidopsis lyrata HOM05D001438 ORTHO05D001336 4.9e-06 55.5 149 28.9
Ciclev10027361m.g Citrus clementina HOM05D000018 ORTHO05D001440 4.9e-06 55.5 137 29.9
Mapoly0148s0017 Marchantia polymorpha HOM05D001438 ORTHO05D001336 4.9e-06 55.5 131 32.1
Prupe.7G221000 Prunus persica HOM05D001438 ORTHO05D001336 4.9e-06 55.5 137 30.7
TPR.G21385 Trifolium pratense HOM05D001438 ORTHO05D001336 4.9e-06 55.5 135 27.4
ATR0705G181 Amborella trichopoda HOM05D001438 ORTHO05D001336 6.4e-06 55.1 135 29.6
CARHR287270 Cardamine hirsuta HOM05D001438 ORTHO05D001336 6.4e-06 55.1 143 30.1
GSVIVG01017178001 Vitis vinifera HOM05D000018 ORTHO05D001440 6.4e-06 55.1 168 26.8
Carub.0001s3285 Capsella rubella HOM05D001438 ORTHO05D001336 8.4e-06 54.7 143 30.1
Ciclev10008880m.g Citrus clementina HOM05D001438 ORTHO05D001336 8.4e-06 54.7 134 26.9
Manes.16G109800 Manihot esculenta HOM05D001438 ORTHO05D001336 8.4e-06 54.7 157 31.2
Nitab4.5_0000012g0020 Nicotiana tabacum HOM05D001438 ORTHO05D001336 8.4e-06 54.7 137 31.4
Oeu034203.1 Olea europaea HOM05D000018 ORTHO05D001440 8.4e-06 54.7 136 33.8


User provided reference genes

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