Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p039670 Quercus lobata HOM05D000726 ORTHO05D007554 0.0e+00 2341.6 1261 100.0
Haze_15292 Corylus avellana HOM05D000726 ORTHO05D007554 0.0e+00 1847.0 1265 77.4
Cfa004123 Carpinus fangiana HOM05D000726 ORTHO05D007554 0.0e+00 1811.2 1265 76.0
MD02G1184600 Malus domestica HOM05D000726 ORTHO05D007554 0.0e+00 1577.8 1259 66.8
Manes.13G112300 Manihot esculenta HOM05D000726 ORTHO05D007554 0.0e+00 1550.8 1263 64.4
RcHm_v2.0_Chr2g0138631 Rosa chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1546.6 1263 65.3
FAN14G0573 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1529.6 1261 64.8
FvH4_6g31560 Fragaria vesca HOM05D000726 ORTHO05D007554 0.0e+00 1519.6 1273 63.3
CSS0015479 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1515.4 1269 64.8
FAN05G3645 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1512.3 1271 63.3
Ciclev10024730m.g Citrus clementina HOM05D000726 ORTHO05D007554 0.0e+00 1504.2 1268 63.0
CSS0022432 Camellia sinensis var. sinensis HOM05D000726 ORTHO05D007554 0.0e+00 1495.3 1269 65.2
CANSAT01G3261 Cannabis sativa HOM05D000726 ORTHO05D007554 0.0e+00 1481.5 1267 62.2
TWI09G1290 Tripterygium wilfordii HOM05D000726 ORTHO05D007554 0.0e+00 1479.9 1267 63.3
Potri.007G055400 Populus trichocarpa HOM05D000726 ORTHO05D007554 0.0e+00 1470.3 1268 64.6
Duzib147G0272 Durio zibethinus HOM05D000726 ORTHO05D007554 0.0e+00 1461.8 1145 66.7
Actinidia36435 Actinidia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1457.6 1269 65.9
Atru.chr3.177 Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1449.5 1264 61.9
TAR376G0399 Trochodendron aralioides HOM05D000726 ORTHO05D007554 0.0e+00 1444.5 1271 62.4
Gorai.007G222900 Gossypium raimondii HOM05D000726 ORTHO05D007554 0.0e+00 1432.2 1263 60.3
Gohir.D11G207900 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1430.6 1263 60.5
Phvul.002G011500 Phaseolus vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1429.1 1262 60.3
Glyma.01G193500 Glycine max HOM05D000726 ORTHO05D007554 0.0e+00 1428.3 1274 60.5
Gohir.A11G215400 Gossypium hirsutum HOM05D000726 ORTHO05D007554 0.0e+00 1423.3 1263 60.2
VMungo1215G2083 Vigna mungo HOM05D000726 ORTHO05D007554 0.0e+00 1421.0 1261 59.8
vmacro05404 Vaccinium macrocarpon HOM05D000726 ORTHO05D007554 0.0e+00 1416.4 1285 59.6
arahy.Tifrunner.gnm1.ann1.1ZHU8Z Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1414.4 1268 59.8
FAN02G1686 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1407.5 1194 64.8
Lalb_Chr09g0323571 Lupinus albus HOM05D000726 ORTHO05D007554 0.0e+00 1402.9 1172 62.4
Ca_24700_v3 Cicer arietinum L. HOM05D000726 ORTHO05D007554 0.0e+00 1401.7 1264 60.8
Medtr5g015600 Medicago truncatula HOM05D000726 ORTHO05D007554 0.0e+00 1401.7 1274 58.4
Sed0012994 Sechium edule HOM05D000726 ORTHO05D007554 0.0e+00 1392.9 1265 59.4
Lj2g0006912 Lotus japonicus HOM05D000726 ORTHO05D007554 0.0e+00 1388.6 1265 61.2
COL.COLO4_11566 Corchorus olitorius HOM05D000726 ORTHO05D007554 0.0e+00 1387.9 1263 59.8
ClCG01G017520 Citrullus lanatus HOM05D000726 ORTHO05D007554 0.0e+00 1387.5 1271 58.6
MELO3C007629.2 Cucumis melo HOM05D000726 ORTHO05D007554 0.0e+00 1377.8 1274 58.9
arahy.Tifrunner.gnm1.ann1.6361M0 Arachis hypogaea HOM05D000726 ORTHO05D007554 0.0e+00 1372.5 1251 59.0
CsaV3_6G044070 Cucumis sativus L. HOM05D000726 ORTHO05D007554 0.0e+00 1366.7 1269 57.9
Atru.BG.105.p Acer truncatum HOM05D000726 ORTHO05D007554 0.0e+00 1348.6 1106 65.2
TPR.G34847 Trifolium pratense HOM05D000726 ORTHO05D007554 0.0e+00 1342.8 1263 57.3
PGR102G1358 Punica granatum HOM05D000726 ORTHO05D007554 0.0e+00 1333.5 1265 57.2
Nn4g25316 Nelumbo nucifera HOM05D000726 ORTHO05D007554 0.0e+00 1325.1 1268 57.4
THA.LOC104819266 Tarenaya hassleriana HOM05D000726 ORTHO05D007554 0.0e+00 1320.4 1264 55.7
Dinv26921 Davidia involucrata HOM05D000726 ORTHO05D007554 0.0e+00 1301.2 1017 69.0
Hund16395 Selenicereus undatus HOM05D000726 ORTHO05D007554 0.0e+00 1294.3 1255 57.8
Nitab4.5_0001417g0030 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1290.4 1270 55.1
Eucgr.H02305 Eucalyptus grandis HOM05D000726 ORTHO05D007554 0.0e+00 1281.2 1269 56.5
FAN09G4729 Fragaria x ananassa HOM05D000726 ORTHO05D007554 0.0e+00 1280.4 1194 61.4
Nitab4.5_0006813g0010 Nicotiana tabacum HOM05D000726 ORTHO05D007554 0.0e+00 1279.6 1288 54.6
CARHR056360 Cardamine hirsuta HOM05D000726 ORTHO05D007554 0.0e+00 1275.4 1273 54.2
PGSC0003DMG400009094 Solanum tuberosum HOM05D000726 ORTHO05D007554 0.0e+00 1271.9 1268 54.5
EL10Ac6g15628 Beta vulgaris HOM05D000726 ORTHO05D007554 0.0e+00 1270.0 1255 56.1
Sp5g19220 Schrenkiella parvula HOM05D000726 ORTHO05D007554 0.0e+00 1268.4 1266 55.3
AL2G19510 Arabidopsis lyrata HOM05D000726 ORTHO05D007554 0.0e+00 1268.1 1264 54.3
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 0.0e+00 1266.5 1099 63.7
Sopen03g007820 Solanum pennellii HOM05D000726 ORTHO05D007554 0.0e+00 1265.4 1269 54.1
Sc03g0002340 Simmondsia chinensis HOM05D000726 ORTHO05D007554 0.0e+00 1262.7 1265 54.5
Solyc03g044020.4 Solanum lycopersicum HOM05D000726 ORTHO05D007554 0.0e+00 1261.1 1269 54.1
Thhalv10023223m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1259.2 1272 53.8
Psat2g171280 Pisum sativum HOM05D000726 ORTHO05D007554 0.0e+00 1255.4 1304 53.6
Aa31LG2G2150 Aethionema arabicum HOM05D000726 ORTHO05D007554 0.0e+00 1253.8 1266 53.5
Cc07_g07020 Coffea canephora HOM05D000726 ORTHO05D007554 0.0e+00 1242.3 1246 57.6
PSO675G6338 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1240.7 1267 56.0
Sabra07G0047700 Salix brachista HOM05D000726 ORTHO05D007554 0.0e+00 1240.7 1187 59.0
PSO541G0636 Papaver somniferum HOM05D000726 ORTHO05D007554 0.0e+00 1240.3 1268 55.8
MSTRG.23676 Avicennia marina HOM05D000726 ORTHO05D007554 0.0e+00 1233.8 1271 54.3
Aqoxy6G02647 Aquilegia oxysepala HOM05D000726 ORTHO05D007554 0.0e+00 1231.1 1266 53.6
CAN.G278.12 Capsicum annuum HOM05D000726 ORTHO05D007554 0.0e+00 1229.5 1270 52.8
Peaxi162Scf00118g01929 Petunia axillaris HOM05D000726 ORTHO05D007554 0.0e+00 1229.5 1282 52.9
AT1G64960 Arabidopsis thaliana HOM05D000726 ORTHO05D007554 0.0e+00 1228.4 1266 53.3
Thhalv10000018m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1224.5 1263 52.7
Lj7A95G20 Lonicera japonica HOM05D000726 ORTHO05D007554 0.0e+00 1223.0 1269 57.9
Migut.H00354 Erythranthe guttata HOM05D000726 ORTHO05D007554 0.0e+00 1221.5 1271 53.9
Ah.03g140460 Amaranthus hybridus HOM05D000726 ORTHO05D007554 0.0e+00 1213.4 1251 55.2
Prupe.6G221900 Prunus persica HOM05D000726 ORTHO05D007554 0.0e+00 1213.0 933 69.6
C06p38860 Brassica napus HOM05D000726 ORTHO05D007554 0.0e+00 1206.4 1274 53.8
BolC6t38979H Brassica oleracea HOM05D000726 ORTHO05D007554 0.0e+00 1202.6 1275 54.4
AUR62003999 Chenopodium quinoa HOM05D000726 ORTHO05D007554 0.0e+00 1198.0 1252 53.7
BcaB03g15339 Brassica carinata HOM05D000726 ORTHO05D007554 0.0e+00 1182.2 1275 52.7
SHI31766 Sapria himalayana HOM05D000726 ORTHO05D007554 0.0e+00 1164.1 1279 52.2
BraA07t30892Z Brassica rapa HOM05D000726 ORTHO05D007554 0.0e+00 1160.2 1163 54.9
HanXRQChr12g0373111 Helianthus annuus HOM05D000726 ORTHO05D007554 0.0e+00 1158.7 1262 51.0
DCAR_010826 Daucus carota HOM05D000726 ORTHO05D007554 0.0e+00 1156.0 1253 52.6
SGA_v2.0_scaffold15G07449 Striga asiatica HOM05D000726 ORTHO05D007554 0.0e+00 1145.6 1323 50.3
Thecc.01G071800 Theobroma cacao HOM05D000726 ORTHO05D007554 0.0e+00 1120.9 948 63.2
Lsat_1_v5_gn_4_160781 Lactuca sativa HOM05D000726 ORTHO05D007554 0.0e+00 1120.1 1266 50.0
ECA232G2303 Erigeron canadensis HOM05D000726 ORTHO05D007554 0.0e+00 1117.1 1270 50.2
Carub.0002s1010 Capsella rubella HOM05D000726 ORTHO05D007554 0.0e+00 1095.5 1053 55.9
Thhalv10006613m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 0.0e+00 1093.2 1156 52.2
Cpa.g.sc6.26 Carica papaya HOM05D000726 ORTHO05D007554 0.0e+00 1083.2 879 64.8
Thhalv10001287m.g Eutrema salsugineum HOM05D000726 ORTHO05D007554 6.0e-311 1071.2 1265 48.2
AUR62040247 Chenopodium quinoa HOM05D000726 ORTHO05D007554 1.4e-288 996.9 982 55.8
A07p32680 Brassica napus HOM05D000726 ORTHO05D007554 8.6e-262 907.9 769 61.1
GSVIVG01000124001 Vitis vinifera HOM05D000726 ORTHO05D007554 1.0e-254 884.4 1044 50.3
SalBow3G2688 Salvia bowleyana HOM05D000726 ORTHO05D007554 4.3e-237 825.9 909 50.4
Zm00001eb051460 Zea mays HOM05D000726 ORTHO05D007554 1.3e-233 814.3 1142 43.0
CDE04G3158 Ceratophyllum demersum HOM05D000726 ORTHO05D007554 9.3e-232 808.1 1251 41.2
ATR0208G028 Amborella trichopoda HOM05D000726 ORTHO05D007554 7.9e-231 805.1 839 51.4
unitig_0.g505 Utricularia gibba HOM05D000726 ORTHO05D007554 3.2e-224 783.1 1300 38.8
Os03g0616500 Oryza sativa ssp. japonica HOM05D000726 ORTHO05D007554 2.0e-186 657.5 805 45.0
SEGI_06920 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 1.7e-177 627.9 920 40.8
Mapoly0045s0033 Marchantia polymorpha HOM05D000726 ORTHO05D007554 9.5e-176 622.1 998 39.6
CiPaw.01G005300 Carya illinoinensis HOM05D000726 ORTHO05D007554 2.8e-175 620.5 457 71.3
SMO364G0657 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 1.1e-171 608.6 742 45.4
HPP92_014039 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.8e-166 589.3 569 54.8
AagrBONN_evm.TU.Sc2ySwM_117.495 Anthoceros agrestis HOM05D000726 ORTHO05D007554 3.3e-160 570.5 736 44.6
CiPaw.01G005400 Carya illinoinensis HOM05D000726 ORTHO05D007554 4.7e-159 566.6 427 78.5
HPP92_028352 Vanilla planifolia HOM05D000726 ORTHO05D007554 2.4e-147 527.7 637 45.1
SEGI_38739 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.1e-122 444.9 649 42.1
Oeu003558.1 Olea europaea HOM05D000726 ORTHO05D007554 2.4e-102 378.3 367 57.2
Cpa.g.sc6.25 Carica papaya HOM05D000726 ORTHO05D007554 3.4e-101 374.4 384 52.9
Sabra16G0084600 Salix brachista HOM05D000726 ORTHO05D007554 1.0e-100 372.9 359 58.5
Sabra11G0026400 Salix brachista HOM05D000726 ORTHO05D007554 1.1e-99 369.4 352 59.7
Sabra11G0056500 Salix brachista HOM05D000726 ORTHO05D007554 3.6e-98 364.4 348 59.2
Glyma.11G048432 Glycine max HOM05D000726 ORTHO05D007554 7.9e-98 363.2 236 78.0
HPP92_014040 Vanilla planifolia HOM05D000726 ORTHO05D007554 6.7e-97 360.1 669 34.8
Glyma.11G048366 Glycine max HOM05D000726 ORTHO05D007554 2.6e-85 321.6 398 47.5
PRCOL_00006071 Prasinoderma coloniale HOM05D000726 ORTHO05D007554 7.7e-85 320.1 487 36.3
Cre06.g262800 Chlamydomonas reinhardtii HOM05D000726 ORTHO05D007554 2.4e-70 271.9 496 34.5
RcHm_v2.0_Chr2g0138441 Rosa chinensis HOM05D000726 ORTHO05D007554 9.1e-70 270.0 376 45.5
CBR_g29418 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-61 242.3 350 36.9
Nn1g04578 Nelumbo nucifera HOM05D000726 ORTHO05D007554 5.4e-54 217.6 312 42.9
Glyma.08G243550 Glycine max HOM05D000726 ORTHO05D025659 1.6e-50 206.1 169 59.2
SEGI_24863 Sequoiadendron giganteum HOM05D000726 ORTHO05D007554 2.4e-46 192.2 312 36.2
ATR0208G027 Amborella trichopoda HOM05D000726 ORTHO05D007554 4.7e-34 151.4 334 35.6
Nn1g04577 Nelumbo nucifera HOM05D000726 ORTHO05D007554 6.6e-28 131.0 131 53.4
Psat3g174600 Pisum sativum HOM05D000726 ORTHO05D025659 4.3e-27 128.3 137 48.9
Psat0s3193g0080 Pisum sativum HOM05D000726 ORTHO05D025659 2.1e-26 125.9 121 50.4
Psat3g172760 Pisum sativum HOM05D000726 ORTHO05D025659 9.0e-25 120.6 121 49.6
Psat3g174680 Pisum sativum HOM05D000726 ORTHO05D025659 1.3e-23 116.7 121 48.8
Lj7C94G0 Lonicera japonica HOM05D000726 ORTHO05D007554 2.9e-23 115.5 203 38.4
SEGI_23696 Sequoiadendron giganteum HOM05D000726 ORTHO05D000001 1.4e-22 113.2 406 27.8
SMO364G0092 Selaginella moellendorffii HOM05D000726 ORTHO05D007554 2.7e-13 82.4 298 26.2
Lsat_1_v5_gn_2_113660 Lactuca sativa HOM05D000726 ORTHO05D007554 3.5e-13 82.0 61 65.6
Zm00001eb060820 Zea mays HOM05D000726 ORTHO05D007554 2.5e-11 75.9 154 31.8


User provided reference genes

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