Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 9.7e-94 347.4 271 100.0
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 1.4e-71 273.9 265 87.9
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 3.0e-71 272.7 269 87.0
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 7.5e-70 268.1 275 84.0
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 9.7e-70 267.7 264 87.5
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 1.3e-69 267.3 267 85.4
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 2.7e-67 259.6 273 84.6
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 4.5e-67 258.8 263 86.3
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 4.5e-67 258.8 263 86.3
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 5.9e-67 258.5 265 86.4
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.0e-66 257.7 263 85.9
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.0e-66 257.7 265 84.9
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.3e-66 257.3 263 85.6
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.3e-66 257.3 273 83.5
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.3e-66 257.3 273 84.2
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 1.7e-66 256.9 268 84.7
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 5.0e-66 255.4 265 85.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 8.5e-66 254.6 270 83.7
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 8.5e-66 254.6 273 82.8
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 1.1e-65 254.2 271 82.7
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 1.1e-65 254.2 271 82.7
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 1.5e-65 253.8 265 84.5
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 1.5e-65 253.8 273 83.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 1.9e-65 253.4 275 81.5
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 3.2e-65 252.7 271 82.3
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 5.5e-65 251.9 275 81.1
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 7.2e-65 251.5 265 84.5
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.6e-64 250.4 265 75.1
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.7e-64 249.6 265 84.2
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.7e-64 249.6 265 84.2
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 2.7e-64 249.6 265 83.8
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 2.7e-64 249.6 247 88.7
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.7e-64 248.8 276 81.5
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.4e-63 247.3 271 80.4
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-63 246.9 263 84.0
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 4.0e-63 245.7 275 79.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 5.2e-63 245.4 266 84.2
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 6.8e-63 245.0 273 80.6
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.8e-63 245.0 266 83.1
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.5e-62 243.8 271 82.7
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 3.4e-62 242.7 262 82.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 3.4e-62 242.7 275 80.7
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.4e-62 242.3 264 84.1
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.5e-62 241.5 264 83.7
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 7.5e-62 241.5 264 83.7
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 1.7e-61 240.4 259 83.4
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 6.3e-61 238.4 263 81.7
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 1.8e-60 236.9 273 77.3
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.8e-60 236.9 249 84.7
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 2.4e-60 236.5 263 79.5
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 3.1e-60 236.1 267 82.0
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 4.1e-60 235.7 274 79.6
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 4.1e-60 235.7 263 83.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 7.0e-60 235.0 263 80.6
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 9.1e-60 234.6 277 79.8
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 9.1e-60 234.6 265 80.8
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.2e-59 234.2 269 79.2
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 1.6e-59 233.8 265 80.8
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 1.6e-59 233.8 266 80.5
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 1.6e-59 233.8 266 80.5
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.6e-59 233.8 263 82.1
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 2.0e-59 233.4 273 75.1
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 2.7e-59 233.0 263 76.4
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 7.7e-59 231.5 255 83.1
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 7.7e-59 231.5 263 81.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.7e-59 231.5 257 81.3
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 1.0e-58 231.1 269 80.3
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.3e-58 229.9 276 78.3
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.9e-58 229.6 267 80.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 2.9e-58 229.6 243 86.0
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 3.8e-58 229.2 263 77.9
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 3.8e-58 229.2 263 77.9
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 3.8e-58 229.2 262 80.2
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 1.5e-57 227.3 271 76.8
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.9e-57 226.9 276 78.3
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.2e-57 225.7 269 78.4
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 5.5e-57 225.3 269 79.6
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 9.5e-57 224.6 271 76.4
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 1.2e-56 224.2 273 78.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.2e-56 224.2 264 79.9
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 2.8e-56 223.0 248 83.1
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 3.6e-56 222.6 276 79.7
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 8.0e-56 221.5 250 82.4
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 8.0e-56 221.5 273 77.3
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 8.0e-56 221.5 266 80.1
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 4.0e-55 219.2 269 78.4
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 6.8e-55 218.4 272 76.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 8.9e-55 218.0 270 77.8
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 8.9e-55 218.0 270 77.4
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.2e-54 217.6 252 82.1
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 1.2e-54 217.6 249 81.1
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 2.0e-54 216.9 271 74.2
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 2.0e-54 216.9 276 75.7
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 2.6e-54 216.5 265 78.9
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 7.5e-54 214.9 269 78.1
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 7.5e-54 214.9 267 78.7
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 269 78.1
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 269 78.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 9.8e-54 214.5 249 83.9
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.7e-53 213.8 267 79.8
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 1.7e-53 213.8 267 79.8
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.7e-53 213.8 267 79.8
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 1.7e-53 213.8 267 79.8
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 2.2e-53 213.4 267 79.4
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 2.8e-53 213.0 277 76.9
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 4.9e-53 212.2 263 78.3
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 4.9e-53 212.2 263 77.9
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 4.9e-53 212.2 263 78.3
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 4.9e-53 212.2 263 78.3
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 8.3e-53 211.5 253 82.6
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 2.4e-52 209.9 250 80.4
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.4e-52 209.9 276 52.5
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 3.1e-52 209.5 263 77.6
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 5.4e-52 208.8 264 78.8
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.6e-51 207.2 259 79.9
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 2.7e-51 206.5 248 79.4
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 3.5e-51 206.1 229 86.0
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 4.5e-51 205.7 264 76.5
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 4.5e-51 205.7 273 75.1
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 5.9e-51 205.3 270 77.4
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 2.9e-50 203.0 272 77.2
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 5.0e-50 202.2 265 78.1
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 8.6e-50 201.4 238 84.9
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 1.9e-49 200.3 265 76.6
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 7.3e-49 198.4 264 76.1
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 9.5e-49 198.0 230 86.5
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.8e-48 196.4 273 43.2
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 4.7e-48 195.7 273 73.6
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.4e-47 194.1 267 72.7
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 5.2e-47 192.2 226 85.8
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 8.9e-47 191.4 236 84.3
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 7.5e-46 188.3 266 66.2
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.7e-45 187.2 262 70.2
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 8.3e-45 184.9 226 84.1
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 8.3e-45 184.9 251 74.5
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 4.6e-43 179.1 264 72.3
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 1.0e-42 177.9 259 70.3
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.1e-41 174.5 260 70.0
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.8e-40 169.9 251 71.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 3.1e-39 166.4 220 82.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.0e-38 163.7 248 59.3
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.1e-36 157.9 86 88.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 1.4e-36 157.5 242 76.0
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 2.7e-35 153.3 208 84.6
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 3.6e-32 142.9 100 72.0
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 8.9e-31 138.3 86 79.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 9.9e-30 134.8 218 79.4
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 4.1e-28 129.4 100 67.0
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 5.6e-25 119.0 283 61.5
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.1e-24 117.1 270 62.2
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 6.2e-24 115.5 246 54.9
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 6.8e-23 112.1 87 66.7
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 1.3e-21 107.8 83 62.7
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 2.2e-21 107.1 91 65.9
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 8.4e-21 105.1 80 66.2
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 7.6e-14 82.0 55 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.0e-06 57.4 56 53.6


User provided reference genes

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