Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 4.3e-55 217.6 101 100.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 3.3e-47 191.4 101 86.1
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.4e-45 186.0 101 84.2
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.0e-45 184.5 101 84.2
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.2e-44 183.0 100 84.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.2e-44 183.0 100 83.0
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.2e-44 183.0 98 84.7
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.5e-44 182.6 101 83.2
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.0e-43 179.9 98 83.7
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.0e-43 179.9 98 83.7
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.3e-43 179.5 101 83.2
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.9e-43 177.6 96 83.3
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 4.9e-43 177.6 96 83.3
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 8.4e-43 176.8 100 82.0
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 1.4e-42 176.0 100 82.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.4e-42 176.0 101 80.2
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 1.9e-42 175.6 99 83.8
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.9e-42 175.6 98 83.7
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 4.2e-42 174.5 89 88.8
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 4.2e-42 174.5 98 78.6
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-41 172.6 101 75.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 2.7e-41 171.8 100 81.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 3.5e-41 171.4 101 78.2
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 7.9e-41 170.2 101 77.2
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 7.9e-41 170.2 101 77.2
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.3e-40 169.5 101 77.2
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 1.3e-40 169.5 98 82.7
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.0e-40 168.3 101 76.2
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 3.0e-40 168.3 101 76.2
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 3.0e-40 168.3 102 76.5
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 5.1e-40 167.5 98 77.6
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.1e-40 167.5 98 76.5
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 6.7e-40 167.2 102 76.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 6.7e-40 167.2 100 75.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 8.7e-40 166.8 104 74.0
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.1e-39 166.4 100 78.0
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.5e-39 166.0 97 78.4
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 1.5e-39 166.0 100 77.0
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.9e-39 165.6 98 80.6
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 1.9e-39 165.6 100 78.0
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.7e-39 164.1 98 74.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 7.4e-39 163.7 98 80.6
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 7.4e-39 163.7 101 75.2
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 1.3e-38 162.9 98 78.6
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.1e-38 162.2 104 75.0
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-38 162.2 98 78.6
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.8e-38 161.8 103 74.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 3.7e-38 161.4 100 74.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.7e-38 161.4 101 78.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.3e-38 160.6 101 78.2
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 6.3e-38 160.6 101 78.2
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 6.3e-38 160.6 100 73.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 6.3e-38 160.6 100 75.0
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 8.2e-38 160.2 104 74.0
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 1.1e-37 159.8 98 74.5
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 1.1e-37 159.8 89 83.1
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.4e-37 159.5 98 73.5
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 4.1e-37 157.9 104 74.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 1.5e-36 156.0 103 70.9
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 1.5e-36 156.0 103 71.8
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.6e-36 155.2 99 72.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 3.4e-36 154.8 98 73.5
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 3.4e-36 154.8 100 75.0
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 5.9e-36 154.1 100 75.0
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 7.6e-36 153.7 100 70.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 6.5e-35 150.6 100 71.0
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.5e-35 150.6 95 70.5
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 8.4e-35 150.2 98 70.4
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 8.4e-35 150.2 100 71.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.1e-34 149.8 102 73.5
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.1e-34 149.8 101 71.3
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 1.4e-34 149.4 101 72.3
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.4e-34 149.4 98 69.4
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.5e-34 148.7 102 71.6
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 3.2e-34 148.3 89 79.8
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 9.3e-34 146.7 101 68.3
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 2.1e-33 145.6 98 67.3
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 2.7e-33 145.2 98 67.3
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 3.5e-33 144.8 88 75.0
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 3.5e-33 144.8 98 67.3
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 4.6e-33 144.4 98 67.3
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.6e-33 144.4 101 70.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 6.1e-33 144.1 104 71.2
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 6.1e-33 144.1 98 70.4
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 1.0e-32 143.3 98 67.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.0e-32 143.3 103 66.0
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 1.5e-31 139.4 98 68.4
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 1.5e-31 139.4 98 68.4
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 1.9e-31 139.0 87 78.2
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.9e-31 139.0 91 68.1
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 2.5e-31 138.7 102 67.6
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 5.7e-31 137.5 100 66.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 9.7e-31 136.7 102 66.7
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 1.3e-30 136.3 102 63.7
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.2e-30 135.6 74 78.4
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.8e-30 135.2 102 66.7
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.7e-30 134.8 98 65.3
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 3.7e-30 134.8 98 65.3
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 4.8e-30 134.4 88 68.2
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 4.8e-30 134.4 103 62.1
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 4.8e-30 134.4 89 69.7
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 6.3e-30 134.0 98 61.2
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.1e-29 133.3 101 64.4
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.8e-29 132.5 102 65.7
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 2.4e-29 132.1 98 60.2
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 2.4e-29 132.1 102 65.7
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.4e-29 132.1 104 67.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 4.1e-29 131.3 91 70.3
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 5.3e-29 131.0 89 70.8
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 6.9e-29 130.6 91 69.2
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 126 53.2
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 1.5e-28 129.4 98 65.3
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.5e-28 129.4 89 70.8
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 2.6e-28 128.6 101 64.4
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 2.6e-28 128.6 107 58.9
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.5e-28 127.9 104 63.5
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 5.9e-28 127.5 90 66.7
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.2e-27 125.6 89 70.8
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 3.8e-27 124.8 102 65.7
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.4e-26 122.9 100 64.0
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 100 62.0
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 2.5e-26 122.1 100 62.0
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.5e-26 122.1 89 61.8
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 7.2e-26 120.6 75 73.3
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.6e-25 118.2 91 62.6
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.3e-23 111.3 92 62.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 4.3e-23 111.3 74 74.3
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 2.4e-21 105.5 82 58.5
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.3e-21 104.4 74 75.7
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.0e-20 102.4 91 59.3
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 6.5e-19 97.4 85 57.6
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 8.5e-19 97.1 101 52.5
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 4.2e-18 94.7 50 78.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.2e-18 94.0 75 64.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 1.6e-17 92.8 74 60.8
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 3.0e-16 88.6 74 60.8
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 3.0e-16 88.6 77 61.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 3.9e-16 88.2 76 61.8
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.3e-14 83.2 97 49.5
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 8.2e-14 80.5 108 43.5
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.4e-13 79.7 53 69.8
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 2.4e-13 79.0 77 53.2
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.7e-12 73.9 76 55.3
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.2e-11 72.4 72 52.8
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 8.5e-11 70.5 52 71.2
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 8.5e-11 70.5 52 71.2
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.2e-09 66.6 80 45.0
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 1.6e-09 66.2 78 44.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 3.6e-09 65.1 35 74.3
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 5.2e-08 61.2 59 49.2
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.1e-07 60.1 94 37.2
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 1.1e-07 60.1 35 71.4


User provided reference genes

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