Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p036987 Quercus lobata HOM05D002370 ORTHO05D003878 2.9e-103 378.6 199 100.0
QL05p028983 Quercus lobata HOM05D002370 ORTHO05D003878 2.5e-46 189.5 118 84.7
COL.COLO4_32473 Corchorus olitorius HOM05D002370 ORTHO05D003878 8.0e-45 184.5 155 68.4
Duzib132G1084 Durio zibethinus HOM05D002370 ORTHO05D003878 1.8e-44 183.3 111 84.7
Thecc.02G120900 Theobroma cacao HOM05D002370 ORTHO05D003878 1.8e-44 183.3 155 67.7
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 5.2e-44 181.8 113 83.2
CiPaw.06G163300 Carya illinoinensis HOM05D002370 ORTHO05D003878 6.7e-44 181.4 155 69.0
FAN20G2522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 6.7e-44 181.4 155 69.0
FAN24G1227 Fragaria x ananassa HOM05D002370 ORTHO05D003878 6.7e-44 181.4 155 69.0
Gohir.D12G018800 Gossypium hirsutum HOM05D002370 ORTHO05D003878 6.7e-44 181.4 155 67.1
Gorai.008G019100 Gossypium raimondii HOM05D002370 ORTHO05D003878 6.7e-44 181.4 155 67.1
Manes.07G052660 Manihot esculenta HOM05D002370 ORTHO05D003878 8.8e-44 181.0 155 67.1
Actinidia02446 Actinidia chinensis HOM05D002370 ORTHO05D003878 1.2e-43 180.6 110 84.5
Haze_10318 Corylus avellana HOM05D002370 ORTHO05D003878 1.2e-43 180.6 111 84.7
ClCG02G007160 Citrullus lanatus HOM05D002370 ORTHO05D003878 2.0e-43 179.9 155 66.5
Gohir.A12G018200 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.0e-43 179.9 155 66.5
Gohir.D01G009100 Gossypium hirsutum HOM05D002370 ORTHO05D003878 2.0e-43 179.9 155 67.1
Gorai.002G011200 Gossypium raimondii HOM05D002370 ORTHO05D003878 2.0e-43 179.9 155 67.1
Sabra09G0065200 Salix brachista HOM05D002370 ORTHO05D003878 2.0e-43 179.9 155 67.1
CSS0026275 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 67.7
MELO3C018533.2 Cucumis melo HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 66.5
CsaV3_7G007670 Cucumis sativus L. HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 66.5
FvH4_2g03080 Fragaria vesca HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 68.4
FAN27G1380 Fragaria x ananassa HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 68.4
Prupe.8G151300 Prunus persica HOM05D002370 ORTHO05D003878 2.6e-43 179.5 155 67.1
MD00G1031100 Malus domestica HOM05D002370 ORTHO05D003878 3.3e-43 179.1 155 67.1
MD05G1107800 Malus domestica HOM05D002370 ORTHO05D003878 3.3e-43 179.1 155 67.1
MD10G1112000 Malus domestica HOM05D002370 ORTHO05D003878 3.3e-43 179.1 155 67.1
Potri.001G289200 Populus trichocarpa HOM05D002370 ORTHO05D003878 3.3e-43 179.1 155 67.1
FAN15G3522 Fragaria x ananassa HOM05D002370 ORTHO05D003878 5.7e-43 178.3 155 67.7
Ciclev10027661m.g Citrus clementina HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 67.7
Cc02_g20160 Coffea canephora HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 66.5
Migut.B00477 Erythranthe guttata HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 66.5
Potri.009G084500 Populus trichocarpa HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 67.7
RcHm_v2.0_Chr6g0247951 Rosa chinensis HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 66.5
Sed0018886 Sechium edule HOM05D002370 ORTHO05D003878 7.5e-43 177.9 155 66.5
TAR625G0640 Trochodendron aralioides HOM05D002370 ORTHO05D003878 1.7e-42 176.8 155 65.2
BolC5t32146H Brassica oleracea HOM05D002370 ORTHO05D003878 2.8e-42 176.0 161 64.6
CiPaw.05G021600 Carya illinoinensis HOM05D002370 ORTHO05D003878 2.8e-42 176.0 155 67.1
Lj5C222G6 Lonicera japonica HOM05D002370 ORTHO05D003878 3.7e-42 175.6 155 66.5
Nitab4.5_0000772g0070 Nicotiana tabacum HOM05D002370 ORTHO05D003878 3.7e-42 175.6 111 82.0
Nitab4.5_0010974g0020 Nicotiana tabacum HOM05D002370 ORTHO05D003878 3.7e-42 175.6 111 82.0
Aqoxy6G01518 Aquilegia oxysepala HOM05D002370 ORTHO05D003878 4.8e-42 175.3 110 79.1
Atru.chr4.144 Acer truncatum HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 67.1
Atru.chr4.155 Acer truncatum HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 67.1
AT1G50030 Arabidopsis thaliana HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 64.5
CARHR040140 Cardamine hirsuta HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 64.5
Thhalv10011174m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 64.5
PSO675G4735 Papaver somniferum HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 63.2
Sp1g36890 Schrenkiella parvula HOM05D002370 ORTHO05D003878 6.3e-42 174.9 155 64.5
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 8.2e-42 174.5 155 65.2
AL1G57600 Arabidopsis lyrata HOM05D002370 ORTHO05D003878 8.2e-42 174.5 155 63.9
BolC6t35612H Brassica oleracea HOM05D002370 ORTHO05D003878 8.2e-42 174.5 155 64.5
BraA06t23548Z Brassica rapa HOM05D002370 ORTHO05D003878 8.2e-42 174.5 155 64.5
CAN.G606.78 Capsicum annuum HOM05D002370 ORTHO05D003878 1.1e-41 174.1 155 64.5
PGSC0003DMG401025733 Solanum tuberosum HOM05D002370 ORTHO05D003878 1.1e-41 174.1 155 64.5
CSS0028039 Camellia sinensis var. sinensis HOM05D002370 ORTHO05D003878 1.4e-41 173.7 155 65.2
Carub.0001s3921 Capsella rubella HOM05D002370 ORTHO05D003878 1.4e-41 173.7 155 63.9
Hma1.2p1_0661F.1_g197980 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 1.4e-41 173.7 155 66.5
Rhsim11G0149700 Rhododendron simsii HOM05D002370 ORTHO05D003878 1.4e-41 173.7 184 58.2
SGA_v2.0_scaffold32G12979 Striga asiatica HOM05D002370 ORTHO05D003878 1.4e-41 173.7 155 65.8
BcaC05g27452 Brassica carinata HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
BcaC08g43183 Brassica carinata HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
A05p20360 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
A06p03390 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
C05p34110 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
C06p04900 Brassica napus HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
BraA05t20943Z Brassica rapa HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 63.9
Solyc01g106770.4 Solanum lycopersicum HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 64.5
Sopen01g049080 Solanum pennellii HOM05D002370 ORTHO05D003878 1.8e-41 173.3 155 64.5
Oeu028915.2 Olea europaea HOM05D002370 ORTHO05D003878 2.4e-41 172.9 113 78.8
PSO541G1630 Papaver somniferum HOM05D002370 ORTHO05D003878 2.4e-41 172.9 155 62.6
SGA_v2.0_scaffold519G52682 Striga asiatica HOM05D002370 ORTHO05D003878 2.4e-41 172.9 155 62.6
BcaB07g33455 Brassica carinata HOM05D002370 ORTHO05D003878 4.1e-41 172.2 155 63.9
Oeu025303.1 Olea europaea HOM05D002370 ORTHO05D003878 4.1e-41 172.2 110 79.1
DCAR_003604 Daucus carota HOM05D002370 ORTHO05D003878 5.3e-41 171.8 155 65.8
ECA232G2594 Erigeron canadensis HOM05D002370 ORTHO05D003878 5.3e-41 171.8 156 67.3
Lsat_1_v5_gn_4_143680 Lactuca sativa HOM05D002370 ORTHO05D003878 7.0e-41 171.4 156 66.7
EL10Ac9g22169 Beta vulgaris HOM05D002370 ORTHO05D003878 1.2e-40 170.6 155 63.2
BcaB02g11126 Brassica carinata HOM05D002370 ORTHO05D003878 1.2e-40 170.6 155 62.6
HanXRQChr04g0107281 Helianthus annuus HOM05D002370 ORTHO05D003878 1.2e-40 170.6 156 66.7
HanXRQChr04g0107251 Helianthus annuus HOM05D002370 ORTHO05D003878 2.7e-40 169.5 156 66.7
Nn5g30713 Nelumbo nucifera HOM05D002370 ORTHO05D003878 3.5e-40 169.1 155 63.9
Peaxi162Scf00016g03243 Petunia axillaris HOM05D002370 ORTHO05D003878 3.5e-40 169.1 110 80.9
TWI59G1328 Tripterygium wilfordii HOM05D002370 ORTHO05D003878 4.5e-40 168.7 155 63.9
vmacro01937 Vaccinium macrocarpon HOM05D002370 ORTHO05D003878 4.5e-40 168.7 155 63.9
GSVIVG01037040001 Vitis vinifera HOM05D002370 ORTHO05D003878 5.9e-40 168.3 155 63.9
SalBow6G1889 Salvia bowleyana HOM05D002370 ORTHO05D003878 7.7e-40 167.9 164 62.2
THA.LOC104826500 Tarenaya hassleriana HOM05D002370 ORTHO05D003878 1.0e-39 167.5 111 77.5
PSO675G3080 Papaver somniferum HOM05D002370 ORTHO05D003878 1.7e-39 166.8 155 61.3
AUR62030874 Chenopodium quinoa HOM05D002370 ORTHO05D003878 2.2e-39 166.4 155 63.2
Os05g0235300 Oryza sativa ssp. japonica HOM05D002370 ORTHO05D003878 2.9e-39 166.0 155 60.0
Eucgr.I02503 Eucalyptus grandis HOM05D002370 ORTHO05D003878 3.8e-39 165.6 155 61.9
Hma1.2p1_1051F.1_g252210 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 3.8e-39 165.6 155 63.2
Medtr5g005380 Medicago truncatula HOM05D002370 ORTHO05D003878 3.8e-39 165.6 155 63.9
AUR62027030 Chenopodium quinoa HOM05D002370 ORTHO05D003878 5.0e-39 165.2 155 62.6
Psat4g229000 Pisum sativum HOM05D002370 ORTHO05D003878 6.5e-39 164.9 155 63.9
MSTRG.16667 Avicennia marina HOM05D002370 ORTHO05D003878 8.5e-39 164.5 155 60.6
Dinv09531 Davidia involucrata HOM05D002370 ORTHO05D003878 8.5e-39 164.5 155 63.2
VMungo1215G1081 Vigna mungo HOM05D002370 ORTHO05D003878 1.1e-38 164.1 155 63.9
ATR0753G079 Amborella trichopoda HOM05D002370 ORTHO05D003878 1.5e-38 163.7 110 76.4
DCAR_021938 Daucus carota HOM05D002370 ORTHO05D003878 1.5e-38 163.7 180 56.7
Lalb_Chr16g0376321 Lupinus albus HOM05D002370 ORTHO05D003878 1.9e-38 163.3 155 63.2
PSO732G0082 Papaver somniferum HOM05D002370 ORTHO05D003878 1.9e-38 163.3 155 60.6
Lj1g0008728 Lotus japonicus HOM05D002370 ORTHO05D003878 2.5e-38 162.9 155 63.2
Phvul.002G049900 Phaseolus vulgaris HOM05D002370 ORTHO05D003878 2.5e-38 162.9 155 63.2
Glyma.11G002600 Glycine max HOM05D002370 ORTHO05D003878 3.2e-38 162.5 155 62.6
arahy.Tifrunner.gnm1.ann1.3J1H0B Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-38 161.8 111 76.6
arahy.Tifrunner.gnm1.ann1.NYP183 Arachis hypogaea HOM05D002370 ORTHO05D003878 5.5e-38 161.8 111 76.6
TPR.G8301 Trifolium pratense HOM05D002370 ORTHO05D003878 5.5e-38 161.8 155 62.6
Glyma.01G241300 Glycine max HOM05D002370 ORTHO05D003878 9.4e-38 161.0 155 62.6
SHI03324 Sapria himalayana HOM05D002370 ORTHO05D003878 9.4e-38 161.0 156 59.0
TAR381G0773 Trochodendron aralioides HOM05D002370 ORTHO05D003878 9.4e-38 161.0 155 61.9
Lalb_Chr05g0210831 Lupinus albus HOM05D002370 ORTHO05D003878 1.2e-37 160.6 155 62.6
Sc18g0007320 Simmondsia chinensis HOM05D002370 ORTHO05D003878 1.2e-37 160.6 110 76.4
Zm00001eb285840 Zea mays HOM05D002370 ORTHO05D003878 1.2e-37 160.6 155 56.1
Ca_24363_v3 Cicer arietinum L. HOM05D002370 ORTHO05D003878 2.7e-37 159.5 155 62.6
PGR142G4285 Punica granatum HOM05D002370 ORTHO05D003878 6.1e-37 158.3 155 60.0
SEGI_12344 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 1.0e-36 157.5 110 73.6
HPP92_016412 Vanilla planifolia HOM05D002370 ORTHO05D003878 1.8e-36 156.8 155 57.4
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 3.0e-36 156.0 110 72.7
CDE06G0012 Ceratophyllum demersum HOM05D002370 ORTHO05D003878 4.4e-35 152.1 155 59.4
Mapoly0047s0119 Marchantia polymorpha HOM05D002370 ORTHO05D003878 3.5e-32 142.5 124 62.9
Pp3c6_4910 Physcomitrium patens HOM05D002370 ORTHO05D003878 2.6e-27 126.3 118 57.6
SMO147G0225 Selaginella moellendorffii HOM05D002370 ORTHO05D003878 1.7e-26 123.6 110 60.0
AagrBONN_evm.TU.Sc2ySwM_228.5412 Anthoceros agrestis HOM05D002370 ORTHO05D003878 4.1e-25 119.0 110 56.4
unitig_60.g25464 Utricularia gibba HOM05D002370 ORTHO05D003878 1.1e-22 110.9 77 77.9
Hma1.2p1_1758F.1_g301190 Hydrangea macrophylla HOM05D002370 ORTHO05D003878 4.3e-22 109.0 119 57.1
Lsat_1_v5_gn_4_117661 Lactuca sativa HOM05D000964 ORTHO05D001488 5.7e-19 98.6 77 71.4
Thhalv10012207m.g Eutrema salsugineum HOM05D002370 ORTHO05D003878 5.4e-17 92.0 155 43.2
CBR_g23926 Chara braunii HOM05D002370 ORTHO05D003878 5.2e-12 75.5 118 40.7
PRCOL_00002418 Prasinoderma coloniale HOM05D002370 ORTHO05D003878 5.8e-11 72.0 181 31.5
Gohir.A01G009500 Gossypium hirsutum HOM05D002370 ORTHO05D003878 6.4e-10 68.6 39 89.7
MCO06G142 Micromonas commoda HOM05D002370 ORTHO05D003878 6.4e-10 68.6 121 36.4
Cre09.g400553 Chlamydomonas reinhardtii HOM05D002370 ORTHO05D003878 1.0e-07 61.2 193 29.0
Lsat_1_v5_gn_7_60880 Lactuca sativa HOM05D002313 ORTHO05D229995 4.3e-06 55.8 39 71.8
PGSC0003DMG400004177 Solanum tuberosum HOM05D002370 ORTHO05D003878 7.3e-06 55.1 32 87.5


User provided reference genes

Program Settings