Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p035944 Quercus lobata HOM05D005482 ORTHO05D006502 0.0e+00 1166.4 601 100.0
Cfa006872 Carpinus fangiana HOM05D005482 ORTHO05D006502 3.6e-266 921.4 616 78.4
CiPaw.08G141000 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.8e-250 868.6 612 76.1
CiPaw.07G046300 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.4e-238 829.7 564 78.4
Thecc.01G089100 Theobroma cacao HOM05D005482 ORTHO05D006502 2.4e-230 802.4 608 69.6
Dinv36943 Davidia involucrata HOM05D005482 ORTHO05D006502 8.1e-226 787.3 616 69.3
MD01G1040900 Malus domestica HOM05D005482 ORTHO05D006502 5.4e-222 774.6 611 68.6
Prupe.6G203300 Prunus persica HOM05D005482 ORTHO05D006502 4.6e-221 771.5 617 67.3
Gorai.008G093000 Gossypium raimondii HOM05D005482 ORTHO05D006502 1.0e-220 770.4 607 67.5
Gohir.D12G079700 Gossypium hirsutum HOM05D005482 ORTHO05D006502 2.3e-220 769.2 607 67.4
Gohir.A12G084900 Gossypium hirsutum HOM05D005482 ORTHO05D006502 8.7e-220 767.3 607 66.9
MD15G1310400 Malus domestica HOM05D005482 ORTHO05D006502 1.9e-214 749.6 618 65.2
COL.COLO4_27370 Corchorus olitorius HOM05D005482 ORTHO05D006502 1.2e-213 746.9 611 65.0
Haze_03890 Corylus avellana HOM05D005482 ORTHO05D006502 5.6e-211 738.0 474 80.2
Duzib264G1263 Durio zibethinus HOM05D005482 ORTHO05D006502 9.6e-211 737.3 610 65.6
CSS0020800 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 1.1e-209 733.8 642 63.7
Sed0012268 Sechium edule HOM05D005482 ORTHO05D006502 1.8e-209 733.0 614 64.0
TAR625G0934 Trochodendron aralioides HOM05D005482 ORTHO05D006502 1.5e-208 729.9 608 64.1
Manes.12G125300 Manihot esculenta HOM05D005482 ORTHO05D006502 5.5e-206 721.5 609 63.7
TWI74G1080 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 9.3e-206 720.7 605 65.5
Hma1.2p1_0369F.1_g137400 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 2.1e-205 719.5 607 64.1
FAN28G0477 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.7e-205 719.2 614 63.7
FvH4_1g19490 Fragaria vesca HOM05D005482 ORTHO05D006502 4.6e-205 718.4 610 64.3
FAN23G0007 Fragaria x ananassa HOM05D005482 ORTHO05D006502 1.0e-204 717.2 610 64.3
FAN19G3176 Fragaria x ananassa HOM05D005482 ORTHO05D006502 5.1e-204 714.9 610 64.1
TWI77G0993 Tripterygium wilfordii HOM05D005482 ORTHO05D006502 5.7e-203 711.4 605 64.5
CANSAT01G3178 Cannabis sativa HOM05D005482 ORTHO05D006502 1.9e-198 696.4 677 57.9
Nitab4.5_0000128g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 7.2e-198 694.5 610 61.8
Nitab4.5_0007769g0050 Nicotiana tabacum HOM05D005482 ORTHO05D006502 4.3e-195 685.3 607 61.4
RcHm_v2.0_Chr2g0110941 Rosa chinensis HOM05D005482 ORTHO05D006502 6.9e-193 677.9 579 63.7
vmacro18548 Vaccinium macrocarpon HOM05D005482 ORTHO05D006502 1.2e-192 677.2 628 61.3
Dinv13587 Davidia involucrata HOM05D005482 ORTHO05D006502 5.0e-191 671.8 505 70.5
CsaV3_6G044940 Cucumis sativus L. HOM05D005482 ORTHO05D006502 6.5e-191 671.4 621 59.4
Cc07_g13970 Coffea canephora HOM05D005482 ORTHO05D006502 2.5e-190 669.5 618 60.7
Potri.007G011800 Populus trichocarpa HOM05D005482 ORTHO05D006502 9.4e-190 667.5 602 60.3
Eucgr.H02447 Eucalyptus grandis HOM05D005482 ORTHO05D006502 8.8e-188 661.0 632 59.0
CSS0030560 Camellia sinensis var. sinensis HOM05D005482 ORTHO05D006502 4.4e-187 658.7 558 65.4
Cpa.g.sc55.13 Carica papaya HOM05D005482 ORTHO05D006502 2.8e-186 656.0 618 59.9
FAN26G3253 Fragaria x ananassa HOM05D005482 ORTHO05D006502 2.4e-185 652.9 579 62.3
ClCG01G018310 Citrullus lanatus HOM05D005482 ORTHO05D006502 3.1e-185 652.5 619 59.8
PGSC0003DMG400014586 Solanum tuberosum HOM05D005482 ORTHO05D006502 5.3e-185 651.7 623 57.8
THA.LOC104798625 Tarenaya hassleriana HOM05D005482 ORTHO05D006502 1.3e-183 647.1 614 61.2
CAN.G581.10 Capsicum annuum HOM05D005482 ORTHO05D006502 1.1e-182 644.0 610 58.9
Lj2A532G30 Lonicera japonica HOM05D005482 ORTHO05D006502 7.2e-182 641.3 602 58.3
Solyc05g051370.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 2.0e-179 633.3 706 52.0
Nn1g05603 Nelumbo nucifera HOM05D005482 ORTHO05D006502 3.3e-179 632.5 608 57.1
Rhsim08G0017200 Rhododendron simsii HOM05D005482 ORTHO05D006502 5.7e-179 631.7 620 58.2
Peaxi162Scf01142g00001 Petunia axillaris HOM05D005482 ORTHO05D006502 9.7e-179 630.9 613 58.4
Sabra07G0009200 Salix brachista HOM05D005482 ORTHO05D006502 1.7e-178 630.2 618 57.0
Sopen05g029760 Solanum pennellii HOM05D005482 ORTHO05D006502 2.2e-178 629.8 706 52.3
MBI16_g31257_MAGBIO Magnolia biondii HOM05D005482 ORTHO05D006502 1.8e-177 626.7 619 59.0
MSTRG.23386 Avicennia marina HOM05D005482 ORTHO05D006502 5.3e-177 625.2 617 57.2
MELO3C007709.2 Cucumis melo HOM05D005482 ORTHO05D006502 2.6e-176 622.9 578 59.7
SGA_v2.0_scaffold108G30927 Striga asiatica HOM05D005482 ORTHO05D006502 2.6e-176 622.9 636 54.9
Atru.chr3.678 Acer truncatum HOM05D005482 ORTHO05D006502 2.9e-175 619.4 620 57.4
PGR102G1704 Punica granatum HOM05D005482 ORTHO05D006502 6.5e-175 618.2 607 56.7
Atru.chr3.724 Acer truncatum HOM05D005482 ORTHO05D006502 1.5e-174 617.1 620 57.3
CARHR279520 Cardamine hirsuta HOM05D005482 ORTHO05D006502 4.2e-174 615.5 619 57.8
PSO210G6830 Papaver somniferum HOM05D005482 ORTHO05D006502 2.6e-171 606.3 618 55.3
DCAR_003442 Daucus carota HOM05D005482 ORTHO05D006502 9.7e-171 604.4 612 55.2
PSO170G0154 Papaver somniferum HOM05D005482 ORTHO05D006502 2.8e-170 602.8 632 53.8
Sc03g0000430 Simmondsia chinensis HOM05D005482 ORTHO05D006502 8.2e-170 601.3 608 56.7
Lalb_Chr16g0381591 Lupinus albus HOM05D005482 ORTHO05D006502 2.4e-169 599.7 608 56.1
Thhalv10003865m.g Eutrema salsugineum HOM05D005482 ORTHO05D006502 3.1e-169 599.4 615 56.6
arahy.Tifrunner.gnm1.ann1.52LQAS Arachis hypogaea HOM05D005482 ORTHO05D006502 7.0e-169 598.2 672 51.8
arahy.Tifrunner.gnm1.ann1.HVQN9F Arachis hypogaea HOM05D005482 ORTHO05D006502 7.0e-169 598.2 672 51.8
Carub.0008s2640 Capsella rubella HOM05D005482 ORTHO05D006502 7.0e-169 598.2 621 56.4
Aa31LG3G16620 Aethionema arabicum HOM05D005482 ORTHO05D006502 1.6e-168 597.0 622 56.8
AT5G65540 Arabidopsis thaliana HOM05D005482 ORTHO05D006502 1.6e-168 597.0 624 56.1
Sp2g28640 Schrenkiella parvula HOM05D005482 ORTHO05D006502 2.7e-168 596.3 622 55.9
AL8G43140 Arabidopsis lyrata HOM05D005482 ORTHO05D006502 1.9e-166 590.1 619 55.6
HanXRQChr12g0368991 Helianthus annuus HOM05D005482 ORTHO05D006502 9.4e-166 587.8 626 54.2
Aqoxy5G01366 Aquilegia oxysepala HOM05D005482 ORTHO05D006502 4.7e-165 585.5 635 54.2
Sabra15G0071300 Salix brachista HOM05D005482 ORTHO05D006502 3.7e-162 575.9 597 55.6
Ciclev10025202m.g Citrus clementina HOM05D005482 ORTHO05D006502 2.0e-160 570.1 640 53.0
Oeu042113.2 Olea europaea HOM05D005482 ORTHO05D006502 7.7e-160 568.2 625 53.3
Migut.H02285 Erythranthe guttata HOM05D005482 ORTHO05D006502 6.1e-157 558.5 638 52.2
EL10Ac6g15187 Beta vulgaris HOM05D005482 ORTHO05D006502 3.4e-155 552.7 603 53.2
Hund16521 Selenicereus undatus HOM05D005482 ORTHO05D006502 5.7e-155 552.0 602 52.7
C03p60440 Brassica napus HOM05D005482 ORTHO05D006502 9.8e-155 551.2 619 52.8
BolC3t18305H Brassica oleracea HOM05D005482 ORTHO05D006502 9.8e-155 551.2 619 52.8
A06p32390 Brassica napus HOM05D005482 ORTHO05D006502 1.6e-152 543.9 626 51.8
AUR62017985 Chenopodium quinoa HOM05D005482 ORTHO05D006502 1.6e-152 543.9 606 52.0
BraA06t26164Z Brassica rapa HOM05D005482 ORTHO05D006502 3.5e-152 542.7 626 51.8
Psat3g169840 Pisum sativum HOM05D005482 ORTHO05D006502 8.0e-149 531.6 608 52.1
Ah.03g139850 Amaranthus hybridus HOM05D005482 ORTHO05D006502 1.8e-148 530.4 602 51.5
Lsat_1_v5_gn_3_62981 Lactuca sativa HOM05D005482 ORTHO05D006502 4.0e-148 529.3 623 50.6
Lj2g0006088 Lotus japonicus HOM05D005482 ORTHO05D006502 4.6e-144 515.8 641 48.2
VMungo1215G0139 Vigna mungo HOM05D005482 ORTHO05D006502 2.5e-142 510.0 612 51.6
Glyma.09G200000 Glycine max HOM05D005482 ORTHO05D006502 3.3e-142 509.6 631 50.9
Ca_25228_v3 Cicer arietinum L. HOM05D005482 ORTHO05D006502 1.2e-141 507.7 610 51.1
Glyma.01G021600 Glycine max HOM05D005482 ORTHO05D006502 8.0e-141 505.0 616 50.6
SalBow3G1020 Salvia bowleyana HOM05D005482 ORTHO05D006502 2.6e-139 500.0 572 53.3
Actinidia24562 Actinidia chinensis HOM05D005482 ORTHO05D006502 1.6e-136 490.7 412 64.1
Phvul.002G145800 Phaseolus vulgaris HOM05D005482 ORTHO05D006502 2.0e-136 490.3 611 51.7
Medtr5g031750 Medicago truncatula HOM05D005482 ORTHO05D006502 9.5e-126 454.9 608 49.0
ECA246G0291 Erigeron canadensis HOM05D005482 ORTHO05D006502 1.1e-124 451.4 454 55.3
HPP92_017563 Vanilla planifolia HOM05D005482 ORTHO05D006502 5.8e-123 445.7 609 47.8
BcaC01g02786 Brassica carinata HOM05D005482 ORTHO05D006502 2.5e-118 430.3 650 45.5
Oeu017109.1 Olea europaea HOM05D005482 ORTHO05D006502 1.9e-110 404.1 414 54.8
unitig_736.g22591 Utricularia gibba HOM05D005482 ORTHO05D006502 4.3e-110 402.9 577 45.4
Hma1.2p1_0369F.1_g137390 Hydrangea macrophylla HOM05D005482 ORTHO05D006502 4.8e-109 399.4 357 59.7
Os03g0802300 Oryza sativa ssp. japonica HOM05D005482 ORTHO05D006502 4.8e-93 346.3 539 42.1
GSVIVG01002523001 Vitis vinifera HOM05D005482 ORTHO05D006502 2.2e-90 337.4 299 61.9
Zm00001eb061260 Zea mays HOM05D005482 ORTHO05D006502 3.2e-89 333.6 527 41.9
GSVIVG01002660001 Vitis vinifera HOM05D005482 ORTHO05D006502 8.7e-87 325.5 233 73.0
TPR.G36831 Trifolium pratense HOM05D005482 ORTHO05D006502 6.3e-69 266.2 459 39.9
ATR0767G089 Amborella trichopoda HOM05D005482 ORTHO05D006502 3.2e-57 227.3 277 45.1
TPR.G7258 Trifolium pratense HOM05D005482 ORTHO05D006502 9.7e-54 215.7 277 48.4
TAR381G1343 Trochodendron aralioides HOM05D005482 ORTHO05D006502 3.7e-53 213.8 277 50.5
Pp3c20_16050 Physcomitrium patens HOM05D005482 ORTHO05D006502 1.1e-49 202.2 635 29.0
Solyc11g016980.3 Solanum lycopersicum HOM05D005482 ORTHO05D006502 1.2e-46 192.2 175 60.0
Haze_03887 Corylus avellana HOM05D005482 ORTHO05D006502 9.8e-46 189.1 139 73.4
Actinidia28819 Actinidia chinensis HOM05D000138 ORTHO05D000078 7.5e-38 162.9 499 31.5
CiPaw.10G105100 Carya illinoinensis HOM05D005482 ORTHO05D006502 1.7e-37 161.8 113 70.8
CiPaw.01G172300 Carya illinoinensis HOM05D005482 ORTHO05D006502 3.7e-37 160.6 168 56.0
CDE07G0659 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 2.4e-36 157.9 197 46.7
BolC3t18285H Brassica oleracea HOM05D005482 ORTHO05D006502 1.6e-35 155.2 175 53.1
Oeu017110.1 Olea europaea HOM05D005482 ORTHO05D006502 2.5e-33 147.9 149 55.0
Solyc01g056590.2 Solanum lycopersicum HOM05D005482 ORTHO05D006502 5.2e-31 140.2 127 59.8
ECA246G4867 Erigeron canadensis HOM05D005482 ORTHO05D006502 6.8e-31 139.8 138 57.2
C03p60240 Brassica napus HOM05D005482 ORTHO05D006502 1.5e-30 138.7 189 47.1
SMO203G0252 Selaginella moellendorffii HOM05D005482 ORTHO05D006502 7.5e-30 136.3 557 26.6
CDE07G2034 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 4.9e-29 133.7 100 69.0
AagrBONN_evm.TU.Sc2ySwM_117.475 Anthoceros agrestis HOM05D005482 ORTHO05D006502 1.1e-28 132.5 600 26.5
RcHm_v2.0_Chr2g0110871 Rosa chinensis HOM05D005482 ORTHO05D006502 1.9e-28 131.7 109 63.3
Mapoly0105s0033 Marchantia polymorpha HOM05D005482 ORTHO05D006502 5.4e-28 130.2 587 24.4
BcaC01g02797 Brassica carinata HOM05D005482 ORTHO05D006502 1.3e-26 125.6 135 51.9
CiPaw.03G215800 Carya illinoinensis HOM05D005482 ORTHO05D006502 2.3e-23 114.8 75 72.0
TAR375G0200 Trochodendron aralioides HOM05D005482 ORTHO05D006502 2.9e-21 107.8 93 65.6
CDE07G1566 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 3.9e-18 97.4 159 45.9
HanXRQChr04g0112001 Helianthus annuus HOM05D005482 ORTHO05D006502 4.0e-15 87.4 75 68.0
Sabra15G0079600 Salix brachista HOM05D005482 ORTHO05D006502 2.0e-14 85.1 78 57.7
BcaB04g20020 Brassica carinata HOM05D005482 ORTHO05D006502 3.4e-14 84.3 67 56.7
CDE07G1819 Ceratophyllum demersum HOM05D005482 ORTHO05D006502 9.9e-14 82.8 80 47.5
ATR0767G001 Amborella trichopoda HOM05D005482 ORTHO05D006502 1.3e-13 82.4 149 40.9
Solyc02g062815.1 Solanum lycopersicum HOM05D005482 ORTHO05D006502 3.3e-09 67.8 49 63.3


User provided reference genes

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