Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 0.0e+00 1301.6 660 100.0
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 8.4e-309 1063.1 649 83.4
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 2.1e-299 1031.9 658 79.5
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 6.3e-296 1020.4 658 78.9
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.6e-278 961.8 666 74.9
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.4e-273 943.7 662 73.6
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 2.2e-269 932.2 649 74.1
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 2.7e-267 925.2 656 73.2
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 1.4e-266 922.9 652 74.2
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 6.7e-266 920.6 663 72.2
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 7.5e-265 917.1 662 72.2
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 7.0e-263 910.6 651 72.7
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 2.6e-257 892.1 660 69.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 2.2e-256 889.0 647 72.2
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 7.7e-254 880.6 652 69.8
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 3.8e-253 878.2 626 72.8
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 5.0e-253 877.9 665 70.1
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 2.7e-251 872.1 644 71.0
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 3.6e-251 871.7 648 68.5
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 1.2e-249 866.7 668 68.9
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 3.7e-248 861.7 663 69.4
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 4.9e-248 861.3 643 69.7
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 8.3e-248 860.5 656 67.7
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 1.1e-247 860.1 652 69.5
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 3.5e-246 855.1 656 67.1
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 2.3e-245 852.4 678 67.0
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 5.0e-245 851.3 642 68.2
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 5.6e-244 847.8 652 66.9
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.9e-242 840.5 663 67.4
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 4.4e-241 838.2 653 67.8
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 1.7e-240 836.3 653 67.7
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 2.9e-240 835.5 649 68.3
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.9e-240 834.7 665 65.9
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 8.3e-240 833.9 661 67.3
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 1.4e-239 833.2 638 68.2
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 5.4e-239 831.2 657 67.3
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 5.4e-239 831.2 657 67.3
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 5.4e-239 831.2 646 66.4
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 7.0e-239 830.9 655 66.9
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 9.2e-239 830.5 653 66.6
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 3.9e-237 825.1 662 65.6
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 8.6e-237 823.9 650 66.3
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 3.3e-236 822.0 648 67.0
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 9.5e-236 820.5 647 65.1
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 2.8e-235 818.9 657 66.1
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 6.2e-235 817.8 656 66.2
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 2.0e-233 812.8 655 65.8
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 5.8e-233 811.2 645 65.6
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 3.7e-232 808.5 661 65.4
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.4e-231 805.8 659 63.1
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 9.2e-231 803.9 708 61.4
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 2.7e-230 802.4 663 64.6
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 8.6e-229 797.3 660 63.3
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 9.5e-228 793.9 646 63.8
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 2.1e-227 792.7 658 62.3
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.4e-226 790.0 657 63.2
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 2.3e-226 789.3 660 63.0
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 2.0e-225 786.2 653 63.4
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 2.5e-220 769.2 662 62.8
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.6e-219 765.4 652 61.7
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.4e-218 763.5 651 61.4
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 3.1e-218 762.3 653 61.3
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 4.0e-218 761.9 652 61.3
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 8.9e-218 760.8 666 61.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 2.0e-217 759.6 609 65.8
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 2.6e-217 759.2 674 60.7
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 5.8e-217 758.1 655 61.5
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.9e-216 755.7 658 61.2
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 4.9e-216 755.0 681 60.2
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 7.1e-215 751.1 654 60.2
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 7.1e-215 751.1 656 61.3
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 1.2e-214 750.4 651 61.8
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 4.6e-214 748.4 664 59.9
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 6.0e-214 748.0 645 61.6
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-212 743.0 654 60.2
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.3e-212 741.9 645 61.4
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 7.3e-212 741.1 647 61.2
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 2.8e-211 739.2 645 60.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.6e-206 721.8 588 65.3
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 8.7e-205 717.6 494 73.1
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 4.8e-203 711.8 565 66.5
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.8e-202 709.9 537 67.2
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 9.0e-202 707.6 648 57.6
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 7.6e-201 704.5 526 70.5
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 1.6e-198 696.8 656 58.7
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.8e-197 693.3 655 59.1
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 5.5e-191 671.8 685 54.7
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 1.9e-183 646.7 493 66.3
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 4.6e-182 642.1 688 53.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 3.7e-179 632.5 500 63.8
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 4.8e-179 632.1 537 63.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 9.0e-178 627.9 650 53.7
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 6.3e-171 605.1 696 49.7
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 1.2e-169 600.9 655 50.7
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-168 597.0 600 56.2
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 9.1e-162 574.7 490 64.9
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 8.5e-160 568.2 540 57.8
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.3e-141 506.9 526 56.1
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.1e-138 498.0 646 44.6
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 1.3e-136 491.1 439 62.2
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 7.0e-122 442.2 696 40.2
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 1.2e-121 441.4 749 38.5
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 1.4e-117 427.9 288 78.8
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 2.7e-113 413.7 284 71.8
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.8e-109 401.0 385 60.5
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.5e-103 380.6 595 40.7
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.2e-100 371.7 335 62.1
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.1e-98 365.2 337 59.1
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 3.9e-96 356.7 292 67.8
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 3.4e-92 343.6 654 35.8
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 9.9e-92 342.0 286 66.8
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.4e-84 317.0 433 48.5
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 3.2e-82 310.5 488 40.4
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.7e-70 270.4 328 50.0
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 9.3e-66 255.8 206 67.0
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.7e-64 249.6 176 69.3
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 9.7e-63 245.7 385 43.4
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 7.7e-60 236.1 382 42.1
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 7.2e-58 229.6 149 75.8
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 5.3e-53 213.4 195 58.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 6.5e-51 206.5 155 65.2
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 4.4e-39 167.2 116 65.5
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 2.2e-38 164.9 332 32.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.5e-34 151.4 684 29.2
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 2.3e-32 144.8 181 48.1
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.9e-19 101.3 124 50.0
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 2.5e-18 98.2 58 87.9
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 2.0e-15 88.6 63 69.8
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 2.6e-15 88.2 93 51.6
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 3.4e-15 87.8 57 71.9
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 5.7e-15 87.0 63 69.8
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 4.9e-14 84.0 162 38.3
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 8.3e-14 83.2 112 45.5
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 1.1e-13 82.8 92 51.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 2.7e-12 78.2 55 67.3
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 3.9e-11 74.3 112 42.9
GSVIVG01036155001 Vitis vinifera HOM05D005709 ORTHO05D006306 3.4e-07 61.2 56 50.0
GSVIVG01030468001 Vitis vinifera HOM05D000074 ORTHO05D001793 3.7e-06 57.8 55 60.0


User provided reference genes

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