Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p034730 Quercus lobata HOM05D000028 ORTHO05D337224 1.2e-68 263.1 131 100.0
QL06p034720 Quercus lobata HOM05D000028 ORTHO05D000701 4.3e-15 85.1 143 39.9
QL06p034736 Quercus lobata HOM05D000028 ORTHO05D000701 4.8e-14 81.6 181 33.7
Nn5g29161 Nelumbo nucifera HOM05D000028 ORTHO05D000701 2.3e-08 62.8 202 28.2
GSVIVG01018850001 Vitis vinifera HOM05D000028 ORTHO05D000701 2.3e-08 62.8 172 28.5
Nn1g05977 Nelumbo nucifera HOM05D000028 ORTHO05D000701 3.0e-08 62.4 180 28.3
TAR068G0007 Trochodendron aralioides HOM05D000028 ORTHO05D000701 5.1e-08 61.6 181 28.2
Peaxi162Scf00656g00026 Petunia axillaris HOM05D000028 ORTHO05D000701 6.7e-08 61.2 51 58.8
Actinidia29802 Actinidia chinensis HOM05D000028 ORTHO05D000701 8.7e-08 60.8 181 28.7
Eucgr.F01611 Eucalyptus grandis HOM05D000028 ORTHO05D000701 8.7e-08 60.8 184 27.2
RcHm_v2.0_Chr2g0100231 Rosa chinensis HOM05D000028 ORTHO05D000701 8.7e-08 60.8 138 33.3
Atru.chr13.378 Acer truncatum HOM05D000028 ORTHO05D000701 1.1e-07 60.5 169 29.0
CDE04G1650 Ceratophyllum demersum HOM05D000028 ORTHO05D000701 1.1e-07 60.5 185 28.1
Thecc.08G035900 Theobroma cacao HOM05D000028 ORTHO05D000701 1.1e-07 60.5 169 29.6
CAN.G851.24 Capsicum annuum HOM05D000028 ORTHO05D000701 1.5e-07 60.1 180 27.8
Potri.005G233600 Populus trichocarpa HOM05D000028 ORTHO05D000701 1.5e-07 60.1 169 29.0
TAR376G0380 Trochodendron aralioides HOM05D000028 ORTHO05D000701 1.5e-07 60.1 181 27.6
Ciclev10001438m.g Citrus clementina HOM05D000028 ORTHO05D000701 1.9e-07 59.7 175 28.0
Duzib041G0360 Durio zibethinus HOM05D000028 ORTHO05D000701 1.9e-07 59.7 169 28.4
GSVIVG01009805001 Vitis vinifera HOM05D000028 ORTHO05D000701 1.9e-07 59.7 181 27.1
PSO541G0688 Papaver somniferum HOM05D000028 ORTHO05D000701 2.5e-07 59.3 181 28.2
PSO675G0139 Papaver somniferum HOM05D000028 ORTHO05D000701 2.5e-07 59.3 181 28.2
Potri.002G029100 Populus trichocarpa HOM05D000028 ORTHO05D000701 2.5e-07 59.3 169 28.4
HanXRQChr09g0269451 Helianthus annuus HOM05D000028 ORTHO05D000701 3.3e-07 58.9 184 28.3
Sed0017551 Sechium edule HOM05D000028 ORTHO05D000701 3.3e-07 58.9 38 76.3
arahy.Tifrunner.gnm1.ann1.6JCP40 Arachis hypogaea HOM05D000028 ORTHO05D000701 4.3e-07 58.5 135 32.6
arahy.Tifrunner.gnm1.ann1.SFYR1S Arachis hypogaea HOM05D000028 ORTHO05D000701 4.3e-07 58.5 135 32.6
Duzib116G0228 Durio zibethinus HOM05D000028 ORTHO05D000701 4.3e-07 58.5 169 28.4
Gohir.A01G113600 Gossypium hirsutum HOM05D000028 ORTHO05D000701 4.3e-07 58.5 169 28.4
Phvul.001G010100 Phaseolus vulgaris HOM05D000028 ORTHO05D000701 4.3e-07 58.5 38 76.3
Hund17206 Selenicereus undatus HOM05D000028 ORTHO05D000701 4.3e-07 58.5 159 29.6
VMungo0647G1768 Vigna mungo HOM05D000028 ORTHO05D000701 4.3e-07 58.5 38 76.3
Aqoxy5G01517 Aquilegia oxysepala HOM05D000028 ORTHO05D000701 5.7e-07 58.2 179 26.8
arahy.Tifrunner.gnm1.ann1.ZA1VNW Arachis hypogaea HOM05D000028 ORTHO05D000701 5.7e-07 58.2 171 29.2
C06p03330 Brassica napus HOM05D000028 ORTHO05D000701 5.7e-07 58.2 98 36.7
CANSAT25G2945 Cannabis sativa HOM05D000028 ORTHO05D000701 5.7e-07 58.2 173 27.7
COL.COLO4_26218 Corchorus olitorius HOM05D000028 ORTHO05D000701 5.7e-07 58.2 185 27.0
ECA246G1760 Erigeron canadensis HOM05D000028 ORTHO05D000701 5.7e-07 58.2 39 71.8
Gohir.A05G189000 Gossypium hirsutum HOM05D000028 ORTHO05D000701 5.7e-07 58.2 169 29.0
Gohir.D01G101400 Gossypium hirsutum HOM05D000028 ORTHO05D000701 5.7e-07 58.2 136 32.4
Gohir.D05G192300 Gossypium hirsutum HOM05D000028 ORTHO05D000701 5.7e-07 58.2 169 29.0
Gorai.002G125900 Gossypium raimondii HOM05D000028 ORTHO05D000701 5.7e-07 58.2 136 32.4
Gorai.009G197500 Gossypium raimondii HOM05D000028 ORTHO05D000701 5.7e-07 58.2 169 29.0
Manes.18G018800 Manihot esculenta HOM05D000028 ORTHO05D000701 5.7e-07 58.2 170 28.2
Solyc04g080940.4 Solanum lycopersicum HOM05D000028 ORTHO05D000701 5.7e-07 58.2 181 27.6
Sopen04g034550 Solanum pennellii HOM05D000028 ORTHO05D000701 5.7e-07 58.2 181 27.6
CiPaw.07G155100 Carya illinoinensis HOM05D000028 ORTHO05D000701 7.4e-07 57.8 183 27.3
Duzib093G0199 Durio zibethinus HOM05D000028 ORTHO05D000701 7.4e-07 57.8 169 28.4
Migut.C00781 Erythranthe guttata HOM05D000028 ORTHO05D000701 7.4e-07 57.8 184 27.2
Lalb_Chr23g0266371 Lupinus albus HOM05D000028 ORTHO05D000701 7.4e-07 57.8 47 66.0
PGR031G3826 Punica granatum HOM05D000028 ORTHO05D000701 7.4e-07 57.8 161 29.2
VMungo1309G0491 Vigna mungo HOM05D000028 ORTHO05D000701 7.4e-07 57.8 60 56.7
Cpa.g.sc518.1 Carica papaya HOM05D000028 ORTHO05D000701 9.7e-07 57.4 136 31.6
BcaC06g34689 Brassica carinata HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
C07p25590 Brassica napus HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
BolC7t43079H Brassica oleracea HOM05D002539 ORTHO05D002876 1.3e-06 57.0 39 66.7
BraA07t29482Z Brassica rapa HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
Carub.0005s1974 Capsella rubella HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
Eucgr.F01847 Eucalyptus grandis HOM05D000028 ORTHO05D000701 1.3e-06 57.0 37 73.0
Thhalv10004431m.g Eutrema salsugineum HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
Lj5g0014957 Lotus japonicus HOM05D000028 ORTHO05D000701 1.3e-06 57.0 37 75.7
Manes.05G153500 Manihot esculenta HOM05D000028 ORTHO05D000701 1.3e-06 57.0 170 27.6
Sp2g30380 Schrenkiella parvula HOM05D000028 ORTHO05D000701 1.3e-06 57.0 141 30.5
SGA_v2.0_scaffold11G05853 Striga asiatica HOM05D000028 ORTHO05D000701 1.3e-06 57.0 44 68.2
THA.LOC104821311 Tarenaya hassleriana HOM05D000028 ORTHO05D000701 1.3e-06 57.0 39 66.7
MSTRG.22320 Avicennia marina HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
MSTRG.25206 Avicennia marina HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
Hma1.2p1_1394F.1_g280440 Hydrangea macrophylla HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
Lj1g0017269 Lotus japonicus HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
MD08G1022400 Malus domestica HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
MD15G1019700 Malus domestica HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
PGR083G1746 Punica granatum HOM05D000028 ORTHO05D000701 1.6e-06 56.6 37 75.7
Sc02g0005410 Simmondsia chinensis HOM05D000028 ORTHO05D000701 1.6e-06 56.6 136 30.9
ECA232G4269 Erigeron canadensis HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
FvH4_2g38920 Fragaria vesca HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
FAN15G2350 Fragaria x ananassa HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
FAN20G0106 Fragaria x ananassa HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
FAN27G1785 Fragaria x ananassa HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
Glyma.14G216200 Glycine max HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 75.7
Lsat_1_v5_gn_4_116980 Lactuca sativa HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
Prupe.1G371800 Prunus persica HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
Hund26877 Selenicereus undatus HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
TWI36G0133 Tripterygium wilfordii HOM05D000028 ORTHO05D000701 2.2e-06 56.2 172 27.3
vmacro04317 Vaccinium macrocarpon HOM05D000028 ORTHO05D000701 2.2e-06 56.2 37 73.0
Actinidia22503 Actinidia chinensis HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
AT3G53210 Arabidopsis thaliana HOM05D000028 ORTHO05D000701 2.8e-06 55.8 39 66.7
CSS0014004 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
CSS0029088 Camellia sinensis var. sinensis HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
Cfa013894 Carpinus fangiana HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
ClCG08G014630 Citrullus lanatus HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
Eucgr.I00346 Eucalyptus grandis HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 70.3
FvH4_1g12390 Fragaria vesca HOM05D000028 ORTHO05D000701 2.8e-06 55.8 38 68.4
Gohir.A06G006500 Gossypium hirsutum HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
Gohir.D06G002400 Gossypium hirsutum HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
Gorai.010G006900 Gossypium raimondii HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
QL02p010476 Quercus lobata HOM05D000028 ORTHO05D000701 2.8e-06 55.8 97 38.1
RcHm_v2.0_Chr2g0100241 Rosa chinensis HOM05D000028 ORTHO05D000701 2.8e-06 55.8 38 68.4
Sed0010570 Sechium edule HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
THA.LOC104809330 Tarenaya hassleriana HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
THA.LOC104811403 Tarenaya hassleriana HOM05D000028 ORTHO05D000701 2.8e-06 55.8 37 73.0
EL10Ac1g00570 Beta vulgaris HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 70.3
BcaB02g10042 Brassica carinata HOM05D000028 ORTHO05D000701 3.7e-06 55.5 39 64.1
AUR62014449 Chenopodium quinoa HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 70.3
AUR62034548 Chenopodium quinoa HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 70.3
MELO3C003783.2 Cucumis melo HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
CsaV3_3G045560 Cucumis sativus L. HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
DCAR_013841 Daucus carota HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
Psat0s2738g0120 Pisum sativum HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
Sabra05G0180200 Salix brachista HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
Sed0011621 Sechium edule HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
unitig_578.g16083 Utricularia gibba HOM05D000028 ORTHO05D000701 3.7e-06 55.5 37 73.0
HPP92_020828 Vanilla planifolia HOM05D000028 ORTHO05D000701 3.7e-06 55.5 36 75.0
Zm00001eb209660 Zea mays HOM05D000028 ORTHO05D000701 3.7e-06 55.5 39 69.2
MSTRG.1238 Avicennia marina HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Ca_02067_v3 Cicer arietinum L. HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Dinv31802 Davidia involucrata HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Dinv39473 Davidia involucrata HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Glyma.04G027800 Glycine max HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Glyma.06G028000 Glycine max HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Glyma.17G254700 Glycine max HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Medtr1g023180 Medicago truncatula HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Phvul.009G013400 Phaseolus vulgaris HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Psat0s2477g0040 Pisum sativum HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 70.3
RcHm_v2.0_Chr6g0302011 Rosa chinensis HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
TPR.G12490 Trifolium pratense HOM05D000028 ORTHO05D000701 4.8e-06 55.1 37 73.0
Actinidia37986 Actinidia chinensis HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 73.0
AL2G35480 Arabidopsis lyrata HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
AT1G75500 Arabidopsis thaliana HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
CARHR068900 Cardamine hirsuta HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
CiPaw.08G061700 Carya illinoinensis HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
Duzib187G1850 Durio zibethinus HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
Migut.N03120 Erythranthe guttata HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
Thhalv10018690m.g Eutrema salsugineum HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
HanXRQChr05g0149441 Helianthus annuus HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
Lalb_Chr22g0354491 Lupinus albus HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 73.0
PSO170G4668 Papaver somniferum HOM05D000028 ORTHO05D000701 6.3e-06 54.7 178 27.0
Sp5g30630 Schrenkiella parvula HOM05D000028 ORTHO05D000701 6.3e-06 54.7 37 70.3
Aa31LG4G5740 Aethionema arabicum HOM05D000028 ORTHO05D000701 8.2e-06 54.3 37 70.3
Ah.05g172110 Amaranthus hybridus HOM05D000028 ORTHO05D000701 8.2e-06 54.3 38 65.8
AL5G34090 Arabidopsis lyrata HOM05D000028 ORTHO05D000701 8.2e-06 54.3 39 66.7
A07p17620 Brassica napus HOM05D000028 ORTHO05D000701 8.2e-06 54.3 37 67.6
Carub.0002s2236 Capsella rubella HOM05D000028 ORTHO05D000701 8.2e-06 54.3 37 70.3
MELO3C010979.2 Cucumis melo HOM05D000028 ORTHO05D000701 8.2e-06 54.3 37 70.3
CsaV3_2G029170 Cucumis sativus L. HOM05D000028 ORTHO05D000701 8.2e-06 54.3 37 70.3
Lsat_1_v5_gn_5_26901 Lactuca sativa HOM05D000028 ORTHO05D000701 8.2e-06 54.3 35 74.3
Lalb_Chr11g0062121 Lupinus albus HOM05D000028 ORTHO05D000701 8.2e-06 54.3 59 55.9
Psat0s2928g0080 Pisum sativum HOM05D000028 ORTHO05D000701 8.2e-06 54.3 36 72.2
PGSC0003DMG400003759 Solanum tuberosum HOM05D000028 ORTHO05D000701 8.2e-06 54.3 191 26.2
unitig_26.g10035 Utricularia gibba HOM05D003484 ORTHO05D004152 8.2e-06 54.3 37 73.0


User provided reference genes

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