Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1422.9 696 100.0
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1296.2 696 89.7
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1261.9 675 89.5
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1242.3 697 84.6
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1234.9 697 85.2
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1233.0 697 85.4
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1225.3 697 83.9
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1223.8 697 84.6
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1223.4 694 84.3
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1221.5 697 83.6
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 0.0e+00 1217.2 694 84.1
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1217.2 692 84.2
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1216.4 697 83.2
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 0.0e+00 1215.7 698 83.8
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 0.0e+00 1214.5 694 83.3
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1214.1 696 82.6
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 696 82.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 0.0e+00 1213.7 692 84.0
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 694 83.4
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1210.3 697 84.4
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1209.9 697 83.4
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 699 83.5
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 0.0e+00 1209.1 696 82.5
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 694 83.7
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1208.0 698 82.7
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 0.0e+00 1206.0 696 82.2
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1205.3 694 83.9
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1203.7 697 82.4
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1201.4 697 82.2
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1200.7 696 81.9
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 696 81.5
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1199.5 695 82.3
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 693 83.3
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 697 82.1
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1198.7 695 82.7
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1198.0 695 83.0
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1195.3 696 81.5
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1194.9 697 81.5
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1194.1 695 82.0
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1192.6 694 82.7
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 697 81.9
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1191.4 720 80.7
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 0.0e+00 1188.7 696 81.6
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1187.2 693 81.2
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1184.9 695 80.9
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1182.5 696 81.0
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 0.0e+00 1179.5 695 81.4
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 0.0e+00 1177.2 694 81.8
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 0.0e+00 1175.6 695 80.9
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1174.8 696 80.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 0.0e+00 1174.5 695 81.6
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 0.0e+00 1174.1 695 81.4
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 0.0e+00 1173.7 695 81.6
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 0.0e+00 1172.9 695 81.4
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1171.8 697 79.8
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 0.0e+00 1170.2 696 79.9
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 0.0e+00 1164.8 693 81.7
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 0.0e+00 1157.9 695 80.4
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1157.5 692 81.1
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 697 80.8
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 0.0e+00 1157.1 700 79.4
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1155.6 695 79.4
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 0.0e+00 1154.8 693 80.2
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1153.7 693 79.8
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 694 80.5
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 0.0e+00 1151.0 697 79.3
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 0.0e+00 1146.0 695 79.0
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 0.0e+00 1144.8 694 77.5
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 0.0e+00 1143.6 695 78.1
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 0.0e+00 1138.3 694 77.4
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 0.0e+00 1137.1 695 78.4
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 0.0e+00 1135.2 695 77.1
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1128.6 695 77.6
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 0.0e+00 1126.3 694 76.2
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1125.2 694 77.2
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1123.2 694 76.1
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1122.8 680 79.9
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 0.0e+00 1122.1 747 74.3
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 696 76.6
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1120.9 718 76.6
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 0.0e+00 1120.1 680 79.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 0.0e+00 1118.2 696 76.3
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 0.0e+00 1118.2 697 78.0
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1116.3 697 78.6
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 645 82.2
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 692 78.5
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1112.8 696 77.9
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 0.0e+00 1110.1 718 75.5
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 0.0e+00 1109.0 693 75.5
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 0.0e+00 1098.2 697 75.5
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 740 74.5
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1093.6 612 85.8
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 0.0e+00 1087.0 719 72.5
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 0.0e+00 1085.9 695 78.1
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1079.7 698 76.2
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 0.0e+00 1078.2 698 74.8
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 1.0e-309 1066.2 697 75.2
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 5.4e-306 1053.9 678 74.3
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 8.6e-296 1020.0 584 82.7
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 1.8e-293 1012.3 704 70.9
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 3.2e-290 1001.5 702 69.8
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 3.5e-289 998.0 695 69.9
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.6e-281 972.6 641 74.9
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.6e-278 961.4 539 85.9
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 6.9e-269 930.6 711 68.1
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.9e-255 885.9 581 73.5
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 6.5e-243 844.3 699 60.4
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 4.6e-241 838.2 538 75.8
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.9e-228 794.7 471 82.2
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.3e-223 778.9 701 56.6
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.3e-223 778.9 701 56.6
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 1.3e-222 776.9 697 55.8
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 4.8e-222 775.0 703 56.5
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.2e-219 766.1 704 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 1.3e-214 750.4 710 55.1
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.8e-195 685.6 386 84.7
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 2.0e-159 567.0 719 44.5
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 1.3e-147 527.7 375 69.6
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 2.5e-141 506.9 504 55.6
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.6e-111 407.1 770 36.4
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 3.6e-108 396.7 248 76.6
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.3e-102 378.3 814 33.2
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.3e-99 367.5 278 64.7
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 1.3e-97 361.7 323 58.2
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 2.3e-78 297.7 251 63.7
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 6.6e-78 296.2 247 61.9
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 8.0e-76 289.3 179 77.7
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 2.4e-72 277.7 184 75.0
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 1.3e-65 255.4 165 72.7
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 6.0e-63 246.5 235 55.3
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.5e-61 241.9 610 30.8
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 2.3e-46 191.4 127 71.7
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 9.9e-42 176.0 138 68.1
Dinv33584 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-40 172.6 96 86.5
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 1.5e-37 162.2 216 45.4
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 1.4e-35 155.6 93 79.6
Sabra07G0015100 Salix brachista HOM05D005163 ORTHO05D006462 6.0e-31 140.2 75 88.0
vmacro17731 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 2.3e-30 138.3 76 85.5
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 1.3e-25 122.5 84 66.7
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 8.2e-20 103.2 86 58.1
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 5.5e-16 90.5 87 51.7
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 2.4e-11 75.1 49 73.5
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 2.0e-10 72.0 49 67.3


User provided reference genes

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