Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p034135 Quercus lobata HOM05D006503 ORTHO05D008116 8.9e-142 507.7 433 100.0
CiPaw.15G110400 Carya illinoinensis HOM05D006503 ORTHO05D008116 2.4e-30 137.5 185 69.2
QL04p096113 Quercus lobata HOM05D006503 ORTHO05D008116 8.1e-26 122.5 184 67.4
QL04p096294 Quercus lobata HOM05D006503 ORTHO05D008116 4.0e-25 120.2 89 68.5
CSS0000010 Camellia sinensis var. sinensis HOM05D006503 ORTHO05D008116 3.5e-21 107.1 179 61.5
Sed0013522 Sechium edule HOM05D006503 ORTHO05D008116 2.8e-18 97.4 179 58.1
Rhsim04G0102600 Rhododendron simsii HOM05D006503 ORTHO05D008116 1.1e-17 95.5 179 58.1
Actinidia38544 Actinidia chinensis HOM05D006503 ORTHO05D008116 2.4e-17 94.4 192 56.2
Cfa017777 Carpinus fangiana HOM05D006503 ORTHO05D008116 1.2e-16 92.0 185 60.5
Ah.13g074010 Amaranthus hybridus HOM05D006503 ORTHO05D008116 3.4e-16 90.5 169 62.7
Dinv36159 Davidia involucrata HOM05D006503 ORTHO05D008116 2.9e-15 87.4 179 58.1
Lju124C42T22 Lonicera japonica HOM05D006503 ORTHO05D008116 2.9e-15 87.4 185 55.7
Thecc.09G181100 Theobroma cacao HOM05D006503 ORTHO05D008116 8.4e-15 85.9 185 54.1
Hma1.2p1_1041F.1_g251090 Hydrangea macrophylla HOM05D006503 ORTHO05D008116 1.1e-14 85.5 160 61.2
Manes.09G020600 Manihot esculenta HOM05D006503 ORTHO05D008116 1.4e-14 85.1 184 55.4
Atru.BG.180.p Acer truncatum HOM05D006503 ORTHO05D008116 1.9e-14 84.7 195 54.9
vmacro09073 Vaccinium macrocarpon HOM05D006503 ORTHO05D008116 7.1e-14 82.8 185 55.7
COL.COLO4_08106 Corchorus olitorius HOM05D006503 ORTHO05D008116 1.2e-13 82.0 184 50.0
Lsat_1_v5_gn_5_161280 Lactuca sativa HOM05D006503 ORTHO05D008116 1.2e-13 82.0 177 53.1
MD05G1241300 Malus domestica HOM05D006503 ORTHO05D008116 1.2e-13 82.0 179 56.4
Prupe.4G124200 Prunus persica HOM05D006503 ORTHO05D008116 2.1e-13 81.3 179 55.9
Duzib150G0906 Durio zibethinus HOM05D006503 ORTHO05D008116 7.9e-13 79.3 184 56.5
Sabra06G0034600 Salix brachista HOM05D006503 ORTHO05D008116 1.0e-12 79.0 159 35.2
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.3e-12 78.6 179 53.1
TAR633G2684 Trochodendron aralioides HOM05D000623 ORTHO05D008116 2.3e-12 77.8 179 59.2
GSVIVG01033259001 Vitis vinifera HOM05D006503 ORTHO05D008116 2.3e-12 77.8 154 33.1
Eucgr.A02340 Eucalyptus grandis HOM05D006503 ORTHO05D008116 6.6e-12 76.3 160 33.8
Potri.006G049400 Populus trichocarpa HOM05D006503 ORTHO05D008116 6.6e-12 76.3 185 55.1
MSTRG.6424 Avicennia marina HOM05D006503 ORTHO05D008116 8.7e-12 75.9 185 53.5
TAR629G2271 Trochodendron aralioides HOM05D006503 ORTHO05D008116 8.7e-12 75.9 179 44.7
AUR62038078 Chenopodium quinoa HOM05D006503 ORTHO05D008116 1.1e-11 75.5 179 52.5
TAR633G2474 Trochodendron aralioides HOM05D006503 ORTHO05D008116 3.3e-11 73.9 184 58.2
RcHm_v2.0_Chr5g0022901 Rosa chinensis HOM05D006503 ORTHO05D008116 5.6e-11 73.2 184 52.7
Ciclev10004347m.g Citrus clementina HOM05D006503 ORTHO05D008116 7.3e-11 72.8 189 49.7
SHI16040 Sapria himalayana HOM05D006503 ORTHO05D008116 1.3e-10 72.0 179 50.8
Migut.J01751 Erythranthe guttata HOM05D006503 ORTHO05D008116 3.6e-10 70.5 185 52.4
Nn5g26957 Nelumbo nucifera HOM05D006503 ORTHO05D008116 4.8e-10 70.1 179 55.9
TWI77G0486 Tripterygium wilfordii HOM05D006503 ORTHO05D008116 6.2e-10 69.7 188 48.9
Carub.0002s2640 Capsella rubella HOM05D006503 ORTHO05D008116 1.8e-09 68.2 184 41.8
Nitab4.5_0002332g0010 Nicotiana tabacum HOM05D006503 ORTHO05D008116 4.0e-09 67.0 179 52.5
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 5.3e-09 66.6 95 44.2
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 5.3e-09 66.6 95 44.2
THA.LOC104808133 Tarenaya hassleriana HOM05D006503 ORTHO05D008116 6.9e-09 66.2 106 40.6
Gohir.A05G408900 Gossypium hirsutum HOM05D006503 ORTHO05D008116 9.0e-09 65.9 72 43.1
Peaxi162Scf00020g00194 Petunia axillaris HOM05D006503 ORTHO05D008116 1.2e-08 65.5 184 53.3
CANSAT21G0513 Cannabis sativa HOM05D006503 ORTHO05D008116 2.0e-08 64.7 194 49.5
ClCG02G018860 Citrullus lanatus HOM05D006503 ORTHO05D008116 2.0e-08 64.7 194 49.5
Cc06_g17640 Coffea canephora HOM05D006503 ORTHO05D008116 2.0e-08 64.7 184 47.8
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 2.6e-08 64.3 98 39.8
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 2.6e-08 64.3 98 39.8
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 2.6e-08 64.3 98 39.8
Gohir.D04G006500 Gossypium hirsutum HOM05D006503 ORTHO05D008116 2.6e-08 64.3 72 41.7
Gorai.012G007700 Gossypium raimondii HOM05D006503 ORTHO05D008116 2.6e-08 64.3 72 41.7
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 2.6e-08 64.3 185 48.1
Glyma.04G221000 Glycine max HOM05D006503 ORTHO05D008116 4.5e-08 63.5 73 47.9
Sc13g0001660 Simmondsia chinensis HOM05D006503 ORTHO05D008116 4.5e-08 63.5 184 50.0
VMungo1309G1456 Vigna mungo HOM05D006503 ORTHO05D008116 4.5e-08 63.5 164 54.9
CAN.G1274.14 Capsicum annuum HOM05D006503 ORTHO05D008116 5.8e-08 63.2 184 50.5
FvH4_3g13661 Fragaria vesca HOM05D006503 ORTHO05D008116 7.6e-08 62.8 179 48.6
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 7.6e-08 62.8 184 48.4
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 9.9e-08 62.4 184 39.7
HanXRQChr13g0395951 Helianthus annuus HOM05D006503 ORTHO05D008116 2.2e-07 61.2 133 30.1
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 2.9e-07 60.8 101 37.6
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 2.9e-07 60.8 76 47.4
Lalb_Chr13g0292411 Lupinus albus HOM05D006503 ORTHO05D008116 3.8e-07 60.5 184 39.7
Oeu016352.1 Olea europaea HOM05D006503 ORTHO05D008116 4.9e-07 60.1 194 49.0
Thhalv10018150m.g Eutrema salsugineum HOM05D006503 ORTHO05D008116 6.4e-07 59.7 105 41.0
PGR004G2741 Punica granatum HOM05D006503 ORTHO05D008116 6.4e-07 59.7 194 49.5
ATR0177G061 Amborella trichopoda HOM05D006503 ORTHO05D008116 1.1e-06 58.9 66 51.5
Lj6g0025212 Lotus japonicus HOM05D006503 ORTHO05D008116 1.4e-06 58.5 184 52.7
Sp5g34600 Schrenkiella parvula HOM05D006503 ORTHO05D008116 1.9e-06 58.2 103 39.8
Aqoxy2G03029 Aquilegia oxysepala HOM05D006503 ORTHO05D008116 4.2e-06 57.0 179 49.2
Medtr3g094280 Medicago truncatula HOM05D006503 ORTHO05D008116 4.2e-06 57.0 90 40.0
Hund03989 Selenicereus undatus HOM05D006503 ORTHO05D008116 5.5e-06 56.6 141 55.3
ATR0561G112 Amborella trichopoda HOM05D006503 ORTHO05D008116 9.3e-06 55.8 66 48.5


User provided reference genes

Program Settings