Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p033465 Quercus lobata HOM05D004487 ORTHO05D005483 5.3e-125 451.1 233 100.0
CiPaw.04G093900 Carya illinoinensis HOM05D004487 ORTHO05D005483 1.1e-90 337.0 240 75.4
Haze_05964 Corylus avellana HOM05D004487 ORTHO05D005483 3.3e-90 335.5 265 69.4
GSVIVG01022203001 Vitis vinifera HOM05D004487 ORTHO05D005483 6.4e-78 294.7 240 67.5
MD01G1016500 Malus domestica HOM05D004487 ORTHO05D005483 3.5e-76 288.9 240 66.7
CANSAT01G2370 Cannabis sativa HOM05D004487 ORTHO05D005483 4.6e-76 288.5 241 67.2
MD15G1334800 Malus domestica HOM05D004487 ORTHO05D005483 1.1e-74 283.9 240 64.6
TWI74G0090 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 1.1e-74 283.9 241 63.1
Nn8g40276 Nelumbo nucifera HOM05D004487 ORTHO05D005483 1.9e-74 283.1 239 62.8
TAR625G1215 Trochodendron aralioides HOM05D004487 ORTHO05D005483 2.5e-74 282.7 240 65.4
Nitab4.5_0007717g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 5.6e-74 281.6 233 63.9
Gorai.007G062000 Gossypium raimondii HOM05D004487 ORTHO05D005483 2.8e-73 279.3 243 62.1
Thecc.01G110300 Theobroma cacao HOM05D004487 ORTHO05D005483 3.6e-73 278.9 240 64.2
CsaV3_6G045820 Cucumis sativus L. HOM05D004487 ORTHO05D005483 6.2e-73 278.1 232 64.2
Gohir.A11G053300 Gossypium hirsutum HOM05D004487 ORTHO05D005483 1.1e-72 277.3 243 60.9
Manes.12G140400 Manihot esculenta HOM05D004487 ORTHO05D005483 1.1e-72 277.3 241 65.6
MELO3C007790.2 Cucumis melo HOM05D004487 ORTHO05D005483 2.4e-72 276.2 232 63.8
Nn2g14563 Nelumbo nucifera HOM05D004487 ORTHO05D005483 5.2e-72 275.0 239 63.6
Gohir.D11G056800 Gossypium hirsutum HOM05D004487 ORTHO05D005483 6.9e-72 274.6 240 62.1
Duzib147G1438 Durio zibethinus HOM05D004487 ORTHO05D005483 8.9e-72 274.2 234 62.0
Nitab4.5_0001495g0020 Nicotiana tabacum HOM05D004487 ORTHO05D005483 7.6e-71 271.2 233 62.2
Atru.chr3.204 Acer truncatum HOM05D004487 ORTHO05D005483 9.9e-71 270.8 232 64.2
vmacro21317 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 1.3e-70 270.4 232 64.7
CSS0025780 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.2e-70 269.6 237 63.3
Lalb_Chr11g0075201 Lupinus albus HOM05D004487 ORTHO05D005483 2.2e-70 269.6 236 61.9
Lj3g0008934 Lotus japonicus HOM05D004487 ORTHO05D005483 2.9e-70 269.2 239 62.3
Peaxi162Scf00171g00006 Petunia axillaris HOM05D004487 ORTHO05D005483 3.8e-70 268.9 243 60.1
vmacro18624 Vaccinium macrocarpon HOM05D004487 ORTHO05D005483 8.4e-70 267.7 233 63.9
Sopen03g029710 Solanum pennellii HOM05D004487 ORTHO05D005483 1.1e-69 267.3 233 62.7
ClCG01G019130 Citrullus lanatus HOM05D004487 ORTHO05D005483 1.4e-69 266.9 228 62.3
Rhsim05G0180000 Rhododendron simsii HOM05D004487 ORTHO05D005483 1.9e-69 266.5 235 60.4
Ca_23004_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 2.4e-69 266.2 238 60.5
Prupe.8G078400 Prunus persica HOM05D004487 ORTHO05D005483 2.4e-69 266.2 228 66.2
MSTRG.14740 Avicennia marina HOM05D004487 ORTHO05D005483 3.2e-69 265.8 236 59.3
CAN.G861.28 Capsicum annuum HOM05D004487 ORTHO05D005483 4.2e-69 265.4 225 61.3
Oeu040918.3 Olea europaea HOM05D004487 ORTHO05D005483 4.2e-69 265.4 287 53.3
CsaV3_5G036000 Cucumis sativus L. HOM05D004487 ORTHO05D005483 5.4e-69 265.0 239 61.5
PGSC0003DMG400015213 Solanum tuberosum HOM05D004487 ORTHO05D005483 9.3e-69 264.2 233 62.2
Solyc03g019910.3 Solanum lycopersicum HOM05D004487 ORTHO05D005483 2.1e-68 263.1 233 62.2
COL.COLO4_11036 Corchorus olitorius HOM05D004487 ORTHO05D005483 3.5e-68 262.3 236 60.2
Ciclev10026392m.g Citrus clementina HOM05D004487 ORTHO05D005483 5.1e-67 258.5 235 59.6
Migut.H01422 Erythranthe guttata HOM05D004487 ORTHO05D005483 5.1e-67 258.5 234 58.5
Prupe.6G176600 Prunus persica HOM05D004487 ORTHO05D005483 1.1e-66 257.3 240 62.9
RcHm_v2.0_Chr2g0115971 Rosa chinensis HOM05D004487 ORTHO05D005483 3.3e-66 255.8 235 61.3
FvH4_1g21950 Fragaria vesca HOM05D004487 ORTHO05D005483 7.3e-66 254.6 232 59.9
Potri.007G085100 Populus trichocarpa HOM05D004487 ORTHO05D005483 7.3e-66 254.6 239 64.0
Sabra07G0070400 Salix brachista HOM05D004487 ORTHO05D005483 1.1e-64 250.8 238 62.2
FAN19G1427 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-64 250.4 229 59.4
FAN23G0375 Fragaria x ananassa HOM05D004487 ORTHO05D005483 1.4e-64 250.4 229 59.4
Ca_25628_v3 Cicer arietinum L. HOM05D004487 ORTHO05D005483 4.0e-64 248.8 234 58.1
FvH4_1g25670 Fragaria vesca HOM05D004487 ORTHO05D005483 4.0e-64 248.8 232 59.1
arahy.Tifrunner.gnm1.ann1.0Q3DRY Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-64 248.4 205 63.4
arahy.Tifrunner.gnm1.ann1.NRP8RH Arachis hypogaea HOM05D004487 ORTHO05D005483 5.3e-64 248.4 205 62.9
arahy.Tifrunner.gnm1.ann1.10QJ8K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.0e-63 246.5 206 62.6
PGR004G1100 Punica granatum HOM05D004487 ORTHO05D005483 2.0e-63 246.5 237 55.7
FAN26G2580 Fragaria x ananassa HOM05D004487 ORTHO05D005483 3.4e-63 245.7 229 58.5
MELO3C012399.2 Cucumis melo HOM05D004487 ORTHO05D005483 7.6e-63 244.6 255 56.1
Lsat_1_v5_gn_2_120680 Lactuca sativa HOM05D004487 ORTHO05D005483 1.7e-62 243.4 260 53.5
FAN19G3081 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-62 243.0 228 58.3
FAN28G1272 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-62 243.0 224 59.4
FAN28G1914 Fragaria x ananassa HOM05D004487 ORTHO05D005483 2.2e-62 243.0 224 59.4
HanXRQChr14g0458831 Helianthus annuus HOM05D004487 ORTHO05D005483 2.2e-62 243.0 236 58.1
TPR.G33715 Trifolium pratense HOM05D004487 ORTHO05D005483 2.9e-62 242.7 235 57.9
DCAR_014253 Daucus carota HOM05D004487 ORTHO05D005483 4.9e-62 241.9 241 56.0
Aa31LG6G15640 Aethionema arabicum HOM05D004487 ORTHO05D005483 8.4e-62 241.1 237 59.1
arahy.Tifrunner.gnm1.ann1.Z7G166 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.4e-61 240.4 205 62.4
AUR62005250 Chenopodium quinoa HOM05D004487 ORTHO05D005483 2.4e-61 239.6 200 59.0
ClCG05G021300 Citrullus lanatus HOM05D004487 ORTHO05D005483 9.3e-61 237.7 234 57.7
ECA238G1615 Erigeron canadensis HOM05D004487 ORTHO05D005483 1.2e-60 237.3 227 55.5
Phvul.009G211400 Phaseolus vulgaris HOM05D004487 ORTHO05D005483 2.1e-60 236.5 236 57.2
MBI04_g31212_MAGBIO Magnolia biondii HOM05D004487 ORTHO05D005483 2.7e-60 236.1 226 57.1
AUR62000713 Chenopodium quinoa HOM05D004487 ORTHO05D005483 3.5e-60 235.7 200 59.0
Gohir.1Z049552 Gossypium hirsutum HOM05D004487 ORTHO05D005483 3.5e-60 235.7 180 65.0
Eucgr.I00528 Eucalyptus grandis HOM05D004487 ORTHO05D005483 1.0e-59 234.2 245 52.2
Nitab4.5_0000477g0120 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.0e-59 232.6 239 56.9
Glyma.15G199500 Glycine max HOM05D004487 ORTHO05D005483 3.9e-59 232.3 233 56.7
arahy.Tifrunner.gnm1.ann1.7417N6 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.5e-58 230.3 205 59.5
Cc02_g15410 Coffea canephora HOM05D004487 ORTHO05D005483 5.6e-58 228.4 238 55.9
Psat2g176760 Pisum sativum HOM05D004487 ORTHO05D005483 7.4e-58 228.0 232 54.3
arahy.Tifrunner.gnm1.ann1.32WU9K Arachis hypogaea HOM05D004487 ORTHO05D005483 2.8e-57 226.1 203 60.6
arahy.Tifrunner.gnm1.ann1.S1NDRU Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-56 224.2 205 57.6
EL10Ac4g09863 Beta vulgaris HOM05D004487 ORTHO05D005483 4.0e-56 222.2 232 50.4
arahy.Tifrunner.gnm1.ann1.Y72RXW Arachis hypogaea HOM05D004487 ORTHO05D005483 6.9e-56 221.5 205 58.5
Hma1.2p1_0486F.1_g163280 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 1.2e-55 220.7 223 55.2
Potri.005G082500 Populus trichocarpa HOM05D004487 ORTHO05D005483 4.5e-55 218.8 238 57.1
Glyma.09G092600 Glycine max HOM05D004487 ORTHO05D005483 2.2e-54 216.5 234 54.3
SGA_v2.0_scaffold106G30591 Striga asiatica HOM05D004487 ORTHO05D005483 4.9e-54 215.3 233 56.7
TAR626G1474 Trochodendron aralioides HOM05D004487 ORTHO05D005483 1.1e-53 214.2 241 55.2
Actinidia08329 Actinidia chinensis HOM05D004487 ORTHO05D005483 3.2e-53 212.6 228 54.8
unitig_22.g6757 Utricularia gibba HOM05D004487 ORTHO05D005483 5.5e-53 211.8 229 50.7
Thhalv10027902m.g Eutrema salsugineum HOM05D004487 ORTHO05D005483 9.3e-53 211.1 239 52.7
VMungo1309G0247 Vigna mungo HOM05D004487 ORTHO05D005483 1.6e-52 210.3 236 50.8
Lj2A942G27 Lonicera japonica HOM05D004487 ORTHO05D005483 6.0e-52 208.4 200 64.5
Aqoxy2G03854 Aquilegia oxysepala HOM05D004487 ORTHO05D005483 6.7e-51 204.9 254 52.0
Carub.0007s0150 Capsella rubella HOM05D004487 ORTHO05D005483 4.3e-50 202.2 234 50.4
arahy.Tifrunner.gnm1.ann1.9RVJ5A Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-49 199.9 229 51.5
Sp7g04740 Schrenkiella parvula HOM05D004487 ORTHO05D005483 2.1e-49 199.9 234 50.9
Sc16g0008840 Simmondsia chinensis HOM05D004487 ORTHO05D005483 2.4e-48 196.4 237 46.0
Nitab4.5_0007222g0010 Nicotiana tabacum HOM05D004487 ORTHO05D005483 3.1e-48 196.1 239 52.3
THA.LOC104807718 Tarenaya hassleriana HOM05D004487 ORTHO05D005483 1.2e-47 194.1 240 50.8
C04p44290 Brassica napus HOM05D004487 ORTHO05D005483 2.0e-47 193.4 232 50.0
AL7G11780 Arabidopsis lyrata HOM05D004487 ORTHO05D005483 1.3e-46 190.7 233 48.9
arahy.Tifrunner.gnm1.ann1.L7ETT7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.9e-46 189.5 174 56.9
Ah.04g161200 Amaranthus hybridus HOM05D004487 ORTHO05D005483 1.1e-45 187.6 233 46.8
BcaC02g09572 Brassica carinata HOM05D004487 ORTHO05D005483 1.9e-45 186.8 234 49.6
CARHR215520 Cardamine hirsuta HOM05D004487 ORTHO05D005483 7.1e-45 184.9 235 47.2
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 1.2e-44 184.1 229 48.9
BolC4t26003H Brassica oleracea HOM05D004487 ORTHO05D005483 2.1e-44 183.3 244 47.5
Dinv13358 Davidia involucrata HOM05D004487 ORTHO05D005483 2.7e-44 183.0 174 59.2
A04p10610 Brassica napus HOM05D004487 ORTHO05D005483 1.8e-43 180.3 229 50.2
Dinv05687 Davidia involucrata HOM05D004487 ORTHO05D005483 3.0e-43 179.5 172 57.6
Actinidia33369 Actinidia chinensis HOM05D004487 ORTHO05D005483 1.1e-42 177.6 243 48.6
arahy.Tifrunner.gnm1.ann1.I45DC0 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.1e-42 177.6 225 47.1
Lj2A929T16 Lonicera japonica HOM05D004487 ORTHO05D005483 1.5e-42 177.2 241 51.5
Sabra05G0067500 Salix brachista HOM05D004487 ORTHO05D005483 1.9e-42 176.8 233 50.2
BcaB06g27071 Brassica carinata HOM05D004487 ORTHO05D005483 4.3e-42 175.6 232 47.8
BraA04t16724Z Brassica rapa HOM05D004487 ORTHO05D005483 4.3e-42 175.6 230 47.4
Hma1.2p1_0375F.1_g138570 Hydrangea macrophylla HOM05D004487 ORTHO05D005483 5.7e-42 175.3 121 71.1
HanXRQChr07g0202331 Helianthus annuus HOM05D004487 ORTHO05D005483 4.8e-41 172.2 166 55.4
AT4G39630 Arabidopsis thaliana HOM05D004487 ORTHO05D005483 3.1e-40 169.5 232 44.4
Os08g0290400 Oryza sativa ssp. japonica HOM05D004487 ORTHO05D005483 9.0e-40 167.9 199 45.7
CDE04G3174 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 2.2e-38 163.3 237 44.7
Lj4A903G12 Lonicera japonica HOM05D004487 ORTHO05D005483 2.2e-38 163.3 187 56.7
ATR0210G008 Amborella trichopoda HOM05D004487 ORTHO05D005483 3.8e-38 162.5 241 42.7
SHI54251 Sapria himalayana HOM05D004487 ORTHO05D005483 3.8e-38 162.5 241 47.3
Lj6g0018564 Lotus japonicus HOM05D004487 ORTHO05D005483 1.9e-37 160.2 107 73.8
CARHR247100 Cardamine hirsuta HOM05D004487 ORTHO05D005483 2.1e-36 156.8 236 44.9
HPP92_005242 Vanilla planifolia HOM05D004487 ORTHO05D005483 2.1e-36 156.8 200 46.0
Sed0026038 Sechium edule HOM05D004487 ORTHO05D005483 1.0e-35 154.5 172 52.9
arahy.Tifrunner.gnm1.ann1.ZIF87W Arachis hypogaea HOM05D004487 ORTHO05D005483 3.0e-35 152.9 183 49.7
arahy.Tifrunner.gnm1.ann1.4M30AQ Arachis hypogaea HOM05D004487 ORTHO05D005483 8.7e-35 151.4 173 50.9
CSS0002847 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 3.7e-33 146.0 97 81.4
TWI53G0384 Tripterygium wilfordii HOM05D004487 ORTHO05D005483 3.7e-33 146.0 240 41.7
Zm00001eb192330 Zea mays HOM05D004487 ORTHO05D005483 8.2e-33 144.8 195 44.1
Sp7g36260 Schrenkiella parvula HOM05D004487 ORTHO05D005483 1.4e-32 144.1 230 44.3
SEGI_02201 Sequoiadendron giganteum HOM05D004487 ORTHO05D005483 3.1e-32 142.9 207 42.0
Psat4g139920 Pisum sativum HOM05D004487 ORTHO05D005483 2.8e-25 119.8 153 45.8
CDE04G3300 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 1.4e-24 117.5 234 35.9
Psat4g139880 Pisum sativum HOM05D004487 ORTHO05D005483 1.8e-24 117.1 151 45.0
FAN26G0673 Fragaria x ananassa HOM05D004487 ORTHO05D005483 9.1e-24 114.8 144 47.9
CDE06G2627 Ceratophyllum demersum HOM05D004487 ORTHO05D005483 5.9e-23 112.1 194 38.1
arahy.Tifrunner.gnm1.ann1.02EUR6 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-20 103.6 133 44.4
arahy.Tifrunner.gnm1.ann1.3C43J1 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.7e-17 94.0 92 54.3
Lalb_Chr12g0203581 Lupinus albus HOM05D004487 ORTHO05D005483 4.8e-17 92.4 230 33.0
arahy.Tifrunner.gnm1.ann1.RJV3W7 Arachis hypogaea HOM05D004487 ORTHO05D005483 2.4e-16 90.1 92 52.2
arahy.Tifrunner.gnm1.ann1.PFH739 Arachis hypogaea HOM05D004487 ORTHO05D005483 3.1e-16 89.7 92 48.9
arahy.Tifrunner.gnm1.ann1.PL6VNF Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-15 87.8 92 48.9
Oeu043116.1 Olea europaea HOM05D004487 ORTHO05D005483 2.5e-13 80.1 159 34.0
arahy.Tifrunner.gnm1.ann1.94164M Arachis hypogaea HOM05D004487 ORTHO05D005483 1.2e-12 77.8 69 58.0
arahy.Tifrunner.gnm1.ann1.FJ4QJG Arachis hypogaea HOM05D004487 ORTHO05D005483 2.1e-12 77.0 69 58.0
CSS0022213 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 2.3e-11 73.6 50 82.0
CSS0015836 Camellia sinensis var. sinensis HOM05D004487 ORTHO05D005483 6.7e-11 72.0 39 94.9
arahy.Tifrunner.gnm1.ann1.E9WDF1 Arachis hypogaea HOM05D004487 ORTHO05D005483 8.8e-11 71.6 97 44.3
ATR0730G218 Amborella trichopoda HOM05D004487 ORTHO05D005483 2.0e-10 70.5 161 31.1
SGA_v2.0_scaffold83G26423 Striga asiatica HOM05D004487 ORTHO05D005483 2.6e-10 70.1 90 44.4
BcaNung00884 Brassica carinata HOM05D004487 ORTHO05D032747 7.5e-10 68.6 53 62.3
arahy.Tifrunner.gnm1.ann1.X4R883 Arachis hypogaea HOM05D004487 ORTHO05D005483 1.0e-06 58.2 52 51.9


User provided reference genes

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