Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p032614 Quercus lobata HOM05D006394 ORTHO05D008057 8.4e-187 656.8 306 100.0
CiPaw.07G057900 Carya illinoinensis HOM05D006394 ORTHO05D008057 4.5e-132 474.9 315 73.7
Cpa.g.sc6.241 Carica papaya HOM05D006394 ORTHO05D008057 5.6e-122 441.4 295 72.9
Sed0000291 Sechium edule HOM05D006394 ORTHO05D008057 6.8e-120 434.5 285 70.2
MD02G1133300 Malus domestica HOM05D006394 ORTHO05D008057 1.7e-118 429.9 292 70.2
Hma1.2p1_0743F.1_g211600 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 4.9e-118 428.3 289 70.2
ClCG01G020230 Citrullus lanatus HOM05D006394 ORTHO05D008057 1.3e-115 420.2 268 73.1
CSS0039773 Camellia sinensis var. sinensis HOM05D006394 ORTHO05D008057 3.0e-115 419.1 300 67.7
Prupe.7G167400 Prunus persica HOM05D006394 ORTHO05D008057 3.6e-113 412.1 316 63.6
GSVIVG01018789001 Vitis vinifera HOM05D006394 ORTHO05D008057 1.1e-112 410.6 314 64.0
vmacro21917 Vaccinium macrocarpon HOM05D006394 ORTHO05D008057 1.8e-112 409.8 309 65.7
Duzib264G0144 Durio zibethinus HOM05D006394 ORTHO05D008057 2.7e-108 396.0 315 61.3
Lj2C467T3 Lonicera japonica HOM05D006394 ORTHO05D008057 7.8e-108 394.4 285 67.0
MD15G1246300 Malus domestica HOM05D006394 ORTHO05D008057 2.3e-107 392.9 316 60.8
MELO3C007895.2 Cucumis melo HOM05D006394 ORTHO05D008057 5.1e-107 391.7 337 59.1
Thecc.01G019800 Theobroma cacao HOM05D006394 ORTHO05D008057 1.6e-105 386.7 315 59.4
CsaV3_6G047020 Cucumis sativus L. HOM05D006394 ORTHO05D008057 2.1e-105 386.3 315 60.3
Haze_03772 Corylus avellana HOM05D006394 ORTHO05D008057 1.1e-104 384.0 274 69.3
Sabra05G0094200 Salix brachista HOM05D006394 ORTHO05D008057 2.3e-104 382.9 264 67.4
Actinidia28701 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.7e-102 376.7 286 64.7
Glyma.16G129000 Glycine max HOM05D006394 ORTHO05D008057 2.4e-101 372.9 316 58.2
VMungo0251G2040 Vigna mungo HOM05D006394 ORTHO05D008057 2.7e-100 369.4 314 57.3
CANSAT01G2157 Cannabis sativa HOM05D006394 ORTHO05D008057 7.8e-100 367.9 318 58.2
TPR.G30047 Trifolium pratense HOM05D006394 ORTHO05D008057 7.8e-100 367.9 284 62.3
Potri.005G115100 Populus trichocarpa HOM05D006394 ORTHO05D008057 2.3e-99 366.3 313 57.5
Gorai.007G195500 Gossypium raimondii HOM05D006394 ORTHO05D008057 3.9e-99 365.5 315 57.8
Gohir.D11G183600 Gossypium hirsutum HOM05D006394 ORTHO05D008057 6.6e-99 364.8 315 57.8
Gohir.D10G090000 Gossypium hirsutum HOM05D006394 ORTHO05D008057 5.6e-98 361.7 310 58.7
Gohir.A11G175800 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.6e-97 360.1 315 57.8
Gorai.011G098800 Gossypium raimondii HOM05D006394 ORTHO05D008057 2.1e-97 359.8 309 58.6
Gohir.A10G098200 Gossypium hirsutum HOM05D006394 ORTHO05D008057 1.1e-96 357.5 310 58.1
Glyma.02G048900 Glycine max HOM05D006394 ORTHO05D008057 3.1e-96 355.9 314 56.7
Eucgr.J02427 Eucalyptus grandis HOM05D006394 ORTHO05D008057 6.8e-96 354.8 318 56.9
Lj4g0024758 Lotus japonicus HOM05D006394 ORTHO05D008057 6.8e-96 354.8 319 56.1
arahy.Tifrunner.gnm1.ann1.SHNU8N Arachis hypogaea HOM05D006394 ORTHO05D008057 2.6e-95 352.8 316 56.6
arahy.Tifrunner.gnm1.ann1.VDMC0V Arachis hypogaea HOM05D006394 ORTHO05D008057 2.6e-95 352.8 316 56.6
RcHm_v2.0_Chr2g0099531 Rosa chinensis HOM05D006394 ORTHO05D008057 7.6e-95 351.3 315 55.6
Ca_22372_v3 Cicer arietinum L. HOM05D006394 ORTHO05D008057 1.3e-94 350.5 315 55.9
COL.COLO4_21919 Corchorus olitorius HOM05D006394 ORTHO05D008057 3.2e-93 345.9 315 54.9
Phvul.003G262300 Phaseolus vulgaris HOM05D006394 ORTHO05D008057 5.4e-93 345.1 248 66.5
Rhsim10G0213000 Rhododendron simsii HOM05D006394 ORTHO05D008057 1.0e-91 340.9 349 52.4
Lalb_Chr09g0333101 Lupinus albus HOM05D006394 ORTHO05D008057 1.3e-91 340.5 314 53.8
Ciclev10025906m.g Citrus clementina HOM05D006394 ORTHO05D008057 3.3e-90 335.9 304 55.9
TWI53G2075 Tripterygium wilfordii HOM05D006394 ORTHO05D008057 2.1e-89 333.2 319 53.9
FvH4_1g11930 Fragaria vesca HOM05D006394 ORTHO05D008057 2.8e-89 332.8 318 54.7
FAN26G2471 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.1e-88 330.9 318 54.7
FAN19G0259 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.2e-87 327.4 318 53.5
TAR365G0979 Trochodendron aralioides HOM05D006394 ORTHO05D008057 2.6e-87 326.2 269 61.7
Psat4g099000 Pisum sativum HOM05D006394 ORTHO05D008057 4.4e-87 325.5 318 51.9
Medtr8g075970 Medicago truncatula HOM05D006394 ORTHO05D008057 3.8e-86 322.4 324 51.9
FAN28G2242 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.1e-85 320.9 313 54.3
Manes.01G145300 Manihot esculenta HOM05D006394 ORTHO05D008057 1.4e-85 320.5 237 65.8
Actinidia22984 Actinidia chinensis HOM05D006394 ORTHO05D008057 2.4e-85 319.7 314 53.8
SalBow3G1310 Salvia bowleyana HOM05D006394 ORTHO05D008057 7.1e-85 318.2 326 52.1
FAN23G1778 Fragaria x ananassa HOM05D006394 ORTHO05D008057 1.7e-83 313.5 311 53.1
Cc07_g10630 Coffea canephora HOM05D006394 ORTHO05D008057 5.6e-82 308.5 325 48.6
TAR133G0002 Trochodendron aralioides HOM05D006394 ORTHO05D008057 3.6e-81 305.8 251 61.4
HanXRQChr14g0441351 Helianthus annuus HOM05D006394 ORTHO05D008057 1.1e-80 304.3 315 51.1
Nn6g32361 Nelumbo nucifera HOM05D006394 ORTHO05D008057 1.7e-78 297.0 314 51.6
DCAR_032392 Daucus carota HOM05D006394 ORTHO05D008057 8.4e-78 294.7 321 49.8
CAN.G1735.1 Capsicum annuum HOM05D006394 ORTHO05D008057 2.4e-77 293.1 321 48.9
PSO541G5117 Papaver somniferum HOM05D006394 ORTHO05D008057 4.2e-77 292.4 334 47.0
Sopen03g006350 Solanum pennellii HOM05D006394 ORTHO05D008057 7.9e-76 288.1 327 48.3
Solyc03g033560.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.0e-75 287.7 324 48.1
Peaxi162Scf00034g02720 Petunia axillaris HOM05D006394 ORTHO05D008057 5.1e-75 285.4 323 49.2
Aqoxy2G01815 Aquilegia oxysepala HOM05D006394 ORTHO05D008057 1.1e-74 284.3 344 45.3
Hma1.2p1_0589F.1_g184775 Hydrangea macrophylla HOM05D006394 ORTHO05D008057 1.1e-74 284.3 158 81.0
PSO675G2528 Papaver somniferum HOM05D006394 ORTHO05D008057 2.5e-74 283.1 331 46.8
PGSC0003DMG400022563 Solanum tuberosum HOM05D006394 ORTHO05D008057 2.4e-72 276.6 259 55.6
PGR102G2413 Punica granatum HOM05D006394 ORTHO05D008057 1.2e-71 274.2 315 49.5
ECA238G0838 Erigeron canadensis HOM05D006394 ORTHO05D008057 9.3e-69 264.6 322 45.7
Sc16g0002110 Simmondsia chinensis HOM05D006394 ORTHO05D008057 2.1e-68 263.5 280 50.0
MSTRG.2708 Avicennia marina HOM05D006394 ORTHO05D008057 1.3e-67 260.8 328 44.2
CDE04G0153 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 1.6e-65 253.8 334 42.2
Dinv33624 Davidia involucrata HOM05D006394 ORTHO05D008057 4.5e-63 245.7 277 48.4
Hund16487 Selenicereus undatus HOM05D006394 ORTHO05D008057 1.7e-62 243.8 312 45.2
Nitab4.5_0006119g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.6e-60 237.3 298 47.0
Lsat_1_v5_gn_4_146641 Lactuca sativa HOM05D006394 ORTHO05D008057 1.3e-57 227.6 287 45.6
THA.LOC104804261 Tarenaya hassleriana HOM05D006394 ORTHO05D008057 5.9e-55 218.8 311 42.1
AT2G17975 Arabidopsis thaliana HOM05D006394 ORTHO05D008057 7.7e-55 218.4 314 41.4
Nitab4.5_0000438g0030 Nicotiana tabacum HOM05D006394 ORTHO05D008057 1.0e-54 218.0 351 39.6
Sp3g31400 Schrenkiella parvula HOM05D006394 ORTHO05D008057 1.0e-54 218.0 314 42.7
AL3G51010 Arabidopsis lyrata HOM05D006394 ORTHO05D008057 1.3e-54 217.6 314 41.4
Os04g0110600 Oryza sativa ssp. japonica HOM05D006394 ORTHO05D008057 6.5e-54 215.3 269 43.9
Thhalv10022807m.g Eutrema salsugineum HOM05D006394 ORTHO05D008057 1.4e-53 214.2 312 42.6
BcaB03g16582 Brassica carinata HOM05D006394 ORTHO05D008057 1.9e-53 213.8 315 41.3
Migut.H01156 Erythranthe guttata HOM05D006394 ORTHO05D008057 1.9e-53 213.8 328 41.5
HPP92_007113 Vanilla planifolia HOM05D006394 ORTHO05D008057 2.1e-52 210.3 278 42.1
unitig_22.g6143 Utricularia gibba HOM05D006394 ORTHO05D008057 5.1e-51 205.7 346 37.6
Zm00001eb418470 Zea mays HOM05D006394 ORTHO05D008057 1.1e-50 204.5 265 41.9
Aa31LG8G15150 Aethionema arabicum HOM05D006394 ORTHO05D008057 2.0e-50 203.8 314 39.2
C07p05000 Brassica napus HOM05D006394 ORTHO05D008057 5.7e-50 202.2 272 43.0
Carub.0003s3211 Capsella rubella HOM05D006394 ORTHO05D008057 1.7e-49 200.7 314 39.8
BcaC06g36350 Brassica carinata HOM05D006394 ORTHO05D008057 4.8e-49 199.1 272 42.6
A07p02700 Brassica napus HOM05D006394 ORTHO05D008057 2.4e-48 196.8 272 43.0
CARHR108450 Cardamine hirsuta HOM05D006394 ORTHO05D008057 2.4e-48 196.8 279 42.3
Zm00001eb411540 Zea mays HOM05D006394 ORTHO05D008057 3.1e-48 196.4 267 41.6
Zm00001eb089410 Zea mays HOM05D006394 ORTHO05D008057 6.9e-48 195.3 271 42.8
BolC7t40901H Brassica oleracea HOM05D006394 ORTHO05D008057 2.6e-47 193.4 273 42.5
BraA07t28070Z Brassica rapa HOM05D006394 ORTHO05D008057 5.9e-47 192.2 273 42.9
SGA_v2.0_scaffold137G35082 Striga asiatica HOM05D006394 ORTHO05D008057 1.2e-39 167.9 285 37.2
Actinidia31001 Actinidia chinensis HOM05D006394 ORTHO05D008057 1.8e-35 154.1 157 51.6
EL10As8g23834 Beta vulgaris HOM05D006394 ORTHO05D008057 2.6e-34 150.2 279 36.6
ATR0421G002 Amborella trichopoda HOM05D006394 ORTHO05D008057 8.8e-27 125.2 90 67.8
CDE02G2139 Ceratophyllum demersum HOM05D006394 ORTHO05D008057 2.6e-26 123.6 134 50.0
Solyc10g038030.3 Solanum lycopersicum HOM05D006394 ORTHO05D008057 1.1e-24 118.2 146 45.2
SMO347G0374 Selaginella moellendorffii HOM05D006394 ORTHO05D008057 1.2e-23 114.8 322 30.4
CBR_g22407 Chara braunii HOM05D006394 ORTHO05D008057 8.8e-19 98.6 167 36.5
Sopen04g013660 Solanum pennellii HOM05D006394 ORTHO05D008057 1.5e-18 97.8 94 53.2
Sopen04g013620 Solanum pennellii HOM05D006394 ORTHO05D008057 1.7e-17 94.4 78 59.0
unitig_8.g2966 Utricularia gibba HOM05D006394 ORTHO05D008057 1.1e-16 91.7 138 39.1
MBI05_g15342_MAGBIO Magnolia biondii HOM05D006394 ORTHO05D008057 5.4e-16 89.4 92 51.1
Oeu048467.1 Olea europaea HOM05D006394 ORTHO05D008057 5.4e-16 89.4 98 49.0
HanXRQChr01g0002841 Helianthus annuus HOM05D006394 ORTHO05D008057 7.2e-13 79.0 75 50.7
ATR0853G001 Amborella trichopoda HOM05D006394 ORTHO05D008057 6.8e-11 72.4 91 47.3
Sopen10g011120 Solanum pennellii HOM05D006394 ORTHO05D008057 6.8e-11 72.4 63 54.0
MELO3C026642.2 Cucumis melo HOM05D001564 ORTHO05D001439 1.4e-08 64.7 148 29.1
CsaV3_1G029820 Cucumis sativus L. HOM05D001564 ORTHO05D001439 1.4e-08 64.7 148 29.1
Sed0004083 Sechium edule HOM05D001564 ORTHO05D001439 2.4e-08 63.9 148 28.4
Hund26490 Selenicereus undatus HOM05D001564 ORTHO05D001439 7.0e-08 62.4 275 24.4
BcaC01g03860 Brassica carinata HOM05D001564 ORTHO05D001439 1.6e-07 61.2 153 26.8
BcaC01g03861 Brassica carinata HOM05D001564 ORTHO05D001439 1.6e-07 61.2 153 26.8
Sed0025918 Sechium edule HOM05D001564 ORTHO05D001439 1.6e-07 61.2 148 27.7
AL3G28340 Arabidopsis lyrata HOM05D001564 ORTHO05D001439 2.0e-07 60.8 153 26.8
AT3G15680 Arabidopsis thaliana HOM05D001564 ORTHO05D001439 2.0e-07 60.8 153 27.5
THA.LOC104810500 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 2.7e-07 60.5 153 26.8
THA.LOC104826539 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 2.7e-07 60.5 141 30.5
BcaC01g03862 Brassica carinata HOM05D001564 ORTHO05D001439 5.9e-07 59.3 153 27.5
A03p39440 Brassica napus HOM05D001564 ORTHO05D001439 5.9e-07 59.3 153 27.5
BolC3t17061H Brassica oleracea HOM05D001564 ORTHO05D001439 5.9e-07 59.3 153 27.5
BraA03t13094Z Brassica rapa HOM05D001564 ORTHO05D001439 5.9e-07 59.3 153 27.5
CANSAT11G0701 Cannabis sativa HOM05D001564 ORTHO05D001439 5.9e-07 59.3 164 25.6
THA.LOC104809001 Tarenaya hassleriana HOM05D001564 ORTHO05D001439 5.9e-07 59.3 140 30.0
MELO3C017900.2 Cucumis melo HOM05D001564 ORTHO05D001439 7.8e-07 58.9 154 27.3
Manes.03G017100 Manihot esculenta HOM05D001564 ORTHO05D001439 7.8e-07 58.9 153 27.5
Carub.0003s1543 Capsella rubella HOM05D001564 ORTHO05D001439 1.0e-06 58.5 153 26.1
CsaV3_4G001400 Cucumis sativus L. HOM05D001564 ORTHO05D001439 1.0e-06 58.5 154 27.3
TPR.G10349 Trifolium pratense HOM05D001564 ORTHO05D001439 1.0e-06 58.5 153 28.8
AL6G37290 Arabidopsis lyrata HOM05D001564 ORTHO05D001439 1.3e-06 58.2 158 27.8
C03p47830 Brassica napus HOM05D001564 ORTHO05D001439 1.3e-06 58.2 153 26.8
Mapoly0019s0131 Marchantia polymorpha HOM05D001564 ORTHO05D001439 1.3e-06 58.2 157 26.8
Ca_20426_v3 Cicer arietinum L. HOM05D001564 ORTHO05D001439 1.7e-06 57.8 153 26.8
DCAR_009202 Daucus carota HOM05D001564 ORTHO05D001439 1.7e-06 57.8 162 27.8
DCAR_009203 Daucus carota HOM05D001564 ORTHO05D001439 1.7e-06 57.8 162 27.8
Psat4g041680 Pisum sativum HOM05D001564 ORTHO05D001439 1.7e-06 57.8 140 29.3
QL02p087744 Quercus lobata HOM05D001564 ORTHO05D001439 1.7e-06 57.8 143 25.9
PGSC0003DMG402020664 Solanum tuberosum HOM05D001564 ORTHO05D001439 1.7e-06 57.8 140 31.4
BcaB04g20907 Brassica carinata HOM05D001564 ORTHO05D001439 2.3e-06 57.4 153 26.1
A01p38410 Brassica napus HOM05D001564 ORTHO05D001439 2.3e-06 57.4 154 26.6
BraA01t03891Z Brassica rapa HOM05D001564 ORTHO05D001439 2.3e-06 57.4 154 26.6
ClCG07G012800 Citrullus lanatus HOM05D001564 ORTHO05D001439 2.3e-06 57.4 154 28.6
Sed0001195 Sechium edule HOM05D001564 ORTHO05D001439 2.3e-06 57.4 154 25.3
Lalb_Chr07g0178781 Lupinus albus HOM05D001564 ORTHO05D001439 2.9e-06 57.0 143 28.7
Os02g0203700 Oryza sativa ssp. japonica HOM05D001564 ORTHO05D001439 2.9e-06 57.0 151 27.2
Phvul.009G198300 Phaseolus vulgaris HOM05D001564 ORTHO05D001439 2.9e-06 57.0 140 30.0
BcaB07g29995 Brassica carinata HOM05D001564 ORTHO05D001439 3.9e-06 56.6 158 29.1
CARHR090770 Cardamine hirsuta HOM05D001564 ORTHO05D001439 3.9e-06 56.6 153 27.5
Lalb_Chr13g0301981 Lupinus albus HOM05D001564 ORTHO05D001439 3.9e-06 56.6 49 51.0
MD15G1121500 Malus domestica HOM05D001564 ORTHO05D001439 3.9e-06 56.6 144 27.8
TPR.G31764 Trifolium pratense HOM05D001564 ORTHO05D001439 3.9e-06 56.6 154 29.2
EL10Ac2g02598 Beta vulgaris HOM05D001564 ORTHO05D001439 5.0e-06 56.2 154 27.3
CARHR118750 Cardamine hirsuta HOM05D001564 ORTHO05D001439 5.0e-06 56.2 140 29.3
Glyma.04G068400 Glycine max HOM05D001564 ORTHO05D001439 5.0e-06 56.2 144 27.1
Lj4g0004155 Lotus japonicus HOM05D001564 ORTHO05D001439 5.0e-06 56.2 140 29.3
MD15G1176000 Malus domestica HOM05D001564 ORTHO05D001439 5.0e-06 56.2 147 26.5
Potri.006G149900 Populus trichocarpa HOM05D001564 ORTHO05D001439 5.0e-06 56.2 140 28.6
Zm00001eb205550 Zea mays HOM05D001564 ORTHO05D001439 5.0e-06 56.2 151 25.2
CiPaw.02G154900 Carya illinoinensis HOM05D001564 ORTHO05D001439 6.6e-06 55.8 153 27.5
AUR62024886 Chenopodium quinoa HOM05D001564 ORTHO05D001439 6.6e-06 55.8 154 24.7
AUR62030661 Chenopodium quinoa HOM05D001564 ORTHO05D001439 6.6e-06 55.8 154 24.7
Phvul.009G094900 Phaseolus vulgaris HOM05D001564 ORTHO05D001439 6.6e-06 55.8 156 26.9
TWI63G0584 Tripterygium wilfordii HOM05D001564 ORTHO05D001439 6.6e-06 55.8 147 23.1
Thhalv10021670m.g Eutrema salsugineum HOM05D001564 ORTHO05D001439 8.6e-06 55.5 153 26.8
PSO170G3356 Papaver somniferum HOM05D001564 ORTHO05D001439 8.6e-06 55.5 152 27.6
Sp3g13980 Schrenkiella parvula HOM05D001564 ORTHO05D001439 8.6e-06 55.5 153 26.8


User provided reference genes

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