Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 3.2e-125 451.8 240 100.0
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 9.7e-114 413.7 242 90.9
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 1.4e-112 409.8 240 90.0
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.2e-111 406.8 240 89.6
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 5.0e-110 401.4 240 90.0
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 1.2e-108 396.7 240 88.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 4.4e-106 388.3 240 86.2
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 7.5e-106 387.5 240 85.4
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 8.3e-105 384.0 240 85.0
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 4.1e-104 381.7 240 83.3
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 4.1e-104 381.7 240 84.6
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.7e-103 379.0 240 83.8
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 4.5e-103 378.3 240 82.9
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 7.7e-103 377.5 241 83.4
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 7.7e-103 377.5 240 82.5
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 2.9e-102 375.6 240 82.5
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.9e-102 375.6 240 83.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 6.5e-102 374.4 241 83.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 8.5e-102 374.0 240 83.3
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 1.1e-101 373.6 240 81.7
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.1e-101 373.6 240 82.5
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-101 372.9 240 81.7
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.9e-101 372.9 240 81.2
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 1.2e-100 370.2 241 82.2
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.8e-100 369.0 241 83.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 3.6e-100 368.6 241 82.6
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 4.7e-100 368.2 240 82.1
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 8.0e-100 367.5 240 80.8
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 8.0e-100 367.5 240 80.4
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.8e-99 366.3 241 82.2
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 5.2e-99 364.8 240 80.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.2e-98 363.6 243 81.9
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 3.4e-98 362.1 241 80.5
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 7.5e-98 360.9 240 80.4
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 1.3e-97 360.1 240 79.6
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 2.2e-97 359.4 225 82.7
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 4.9e-97 358.2 241 78.0
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.4e-96 356.7 281 71.5
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 3.1e-96 355.5 241 78.8
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.1e-96 355.1 241 78.4
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 4.1e-96 355.1 241 78.0
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 4.1e-96 355.1 241 78.8
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.2e-95 353.6 241 78.4
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.6e-95 353.2 240 78.8
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 7.8e-95 350.9 240 78.8
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 7.8e-95 350.9 240 77.9
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 2.9e-94 349.0 240 77.5
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 3.8e-94 348.6 241 76.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 8.6e-94 347.4 243 77.4
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.1e-93 347.1 220 83.2
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.1e-93 347.1 240 75.4
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 1.1e-93 347.1 240 74.2
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.5e-93 346.7 240 73.8
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.5e-93 346.7 242 77.3
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.9e-93 346.3 240 77.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 2.5e-93 345.9 243 76.1
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 3.3e-93 345.5 240 73.8
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 5.6e-93 344.7 240 73.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 7.3e-93 344.4 240 73.8
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 7.3e-93 344.4 240 73.8
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 1.2e-92 343.6 236 77.5
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 2.1e-92 342.8 243 76.5
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 3.6e-92 342.0 240 72.9
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 3.6e-92 342.0 240 73.8
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 3.6e-92 342.0 240 73.3
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.0e-91 340.5 241 75.1
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.8e-91 339.7 240 73.3
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 3.0e-91 339.0 238 78.2
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 4.0e-91 338.6 240 72.9
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 4.0e-91 338.6 240 72.9
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 6.8e-91 337.8 240 72.5
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 8.9e-91 337.4 241 73.0
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 8.9e-91 337.4 237 77.2
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.9e-91 337.4 240 76.2
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.9e-91 337.4 196 92.3
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.2e-90 337.0 238 78.2
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 1.2e-90 337.0 241 74.7
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.5e-90 336.7 246 71.1
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 3.4e-90 335.5 241 73.4
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 4.4e-90 335.1 244 75.0
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 72.6
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 7.5e-90 334.3 241 72.6
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.3e-89 333.6 240 70.8
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.3e-89 333.6 242 73.1
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.9e-89 332.4 241 75.1
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 3.7e-89 332.0 244 74.6
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 6.4e-89 331.3 225 78.7
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 8.3e-89 330.9 221 78.7
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.8e-88 329.7 243 72.0
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 1.8e-88 329.7 240 72.9
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.8e-88 329.7 269 67.3
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 2.4e-88 329.3 222 80.6
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 4.1e-88 328.6 195 89.7
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 4.1e-88 328.6 242 74.4
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 7.0e-88 327.8 243 72.0
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 9.2e-88 327.4 241 73.9
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 9.2e-88 327.4 195 87.7
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.6e-87 326.6 240 71.2
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 5.9e-87 324.7 242 73.1
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 1.7e-86 323.2 280 66.8
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.6e-86 320.9 195 85.6
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.5e-85 319.3 242 70.7
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 4.3e-85 318.5 195 84.1
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 9.5e-85 317.4 223 76.2
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.6e-84 316.6 242 69.8
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 2.1e-84 316.2 242 69.8
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.8e-84 315.8 245 72.7
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.6e-84 315.5 201 83.6
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.7e-84 315.1 201 83.1
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 6.2e-84 314.7 242 71.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 8.0e-84 314.3 201 82.6
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 1.0e-83 313.9 203 82.3
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.8e-83 313.2 257 68.1
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 2.3e-83 312.8 225 72.4
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 2.3e-83 312.8 197 81.2
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.1e-83 312.4 243 67.9
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 6.8e-83 311.2 195 83.6
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 8.9e-83 310.8 277 64.3
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 1.2e-82 310.5 230 72.2
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 2.6e-82 309.3 289 60.9
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 3.4e-82 308.9 257 67.7
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 5.8e-82 308.1 195 84.1
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 2.4e-80 302.8 215 75.3
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 5.4e-80 301.6 286 62.9
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 2.3e-78 296.2 243 63.8
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 3.9e-78 295.4 243 63.8
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.4e-75 287.0 195 75.4
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 6.8e-75 284.6 179 83.8
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.2e-71 273.9 175 81.7
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.5e-69 266.9 220 67.3
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 3.3e-69 265.8 241 61.8
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 5.4e-64 248.4 187 69.0
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 8.6e-62 241.1 195 70.8
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 3.3e-61 239.2 223 59.2
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 2.4e-59 233.0 135 88.9
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 7.1e-56 221.5 154 77.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 2.1e-47 193.4 154 64.9
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.3e-41 174.1 146 66.4
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 8.4e-41 171.4 130 67.7
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 2.1e-39 166.8 111 78.4
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.1e-39 166.8 167 57.5
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 9.0e-35 151.4 197 43.1
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 7.1e-32 141.7 237 45.6
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.0e-30 136.3 237 41.8
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.8e-28 129.8 236 42.8
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 1.1e-27 127.9 202 35.1
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.5e-26 124.0 198 35.9
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 6.5e-25 118.6 99 61.6
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 5.1e-22 109.0 178 36.0
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 1.5e-21 107.5 77 72.7
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 3.3e-21 106.3 192 34.9
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.0e-17 94.7 177 42.4
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.9e-16 90.5 62 77.4
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 3.9e-14 82.8 62 69.4
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 1.8e-11 73.9 63 66.7
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 2.7e-07 60.1 41 80.5
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 3.6e-07 59.7 40 82.5
C06p01940 Brassica napus HOM05D004411 ORTHO05D032662 3.0e-06 56.6 92 44.6


User provided reference genes

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